|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054783 ID=TCONS_00054783|Name=TCONS_00054783|organism=Clytia hemisphaerica|type=transcript|length=1751bp
GGAAAGAGCGCTATGAGAAGAAATCAGTTTAAATACACACAGTGCATGAT
TCTAATAAAGCATCATGTATTCAAAGCTATTTTTATTGCTATTTCTGCTG
GTATCTCCAAATCAAGTAAGCGGTCGTAAAGGACTGTATTACGCACGCCA
CTTGCCACGAGGAGAATATTGCTCATTCAAAGGGTATGTACCGGGAGGAA
ATAAAGTCACCGTGAAAAGGATCACAGCACCGACAGCAAAAATGGAAGAC
GGAATTTTAGGTGCTTTTGGATCAAACATGGGAAAAATCGTTGCTGGAAC
ACAAGGAAACGAACTGATTATGAAAGGACTTAGCAAATTAGGAAAACTGG
CTAAAATCGCACCCAAATTGGGCACAGCGTTAGGAATCTTTGGTATCGGT
CTTGGTATCGTTCAAGCCTTTACAGATCCATCGCCTCAGGATATTTTGGA
TAAAGCCAATGAAGCTATCAGAAAATTAACTGATGAAGTCAACCATCGAT
TGGACGAGATGAAAGGATATGTCGACCATAAGACAATCAATCTCGAAAAA
GATTTGGCCGGACGCGAGTACAAGTCTTTGTTCAAAATGTGGGGGAACTG
TTTGAAGGagacaacaaaaaagaaagttgaCGAATGCCAGGAGGATGCAG
CCAAAGATATCATGGCTGCACGACCCAAATTCGCACTTTTTTCCAGCAAA
GTCCATGCTAACCAAAAACTTTCCACTTTTGACGTGAAGCGTCTGGAGGC
TGCGTTGCTACTTTTCCGTGATTACGTTGTTCTGTGTTTGGCCAGTCTTT
CCGCTTTAACTGCCACGTATGCAGATTCACCAAGCCATAAGCTAGACTTT
AGCCGGTACGCAAAGGATTTGAATAATGAGATAAAATGGTCTGCATTGTA
CGTCCGAAACGCAGTGTCCATGATCGAGAAAATGCATACAGATGGCGACT
ACTGTAAGGAAACCGTGTCAtgcaaaacaaaggaaatttggGAAGGCTGG
CCAGGCGCACATACACAACAAAGCGTGGATTGCCAATGTGTGTTTGACCG
TGCTGGAGTATCAAGCCACACGTGTCATGAGAATGTGATGATCAGATGGG
ATGGCAAAAGAAAGTTAGGAAATGATTGGACATATTATACtacttttcaa
aagaattggGAAGAGGGTGGCAAATGGATCGCGTTGAAATTATTCCATGA
ACGTCCCtacatgaaaaaattgaaagaagcaATCTCAAATTATTGGCAAA
ATACACTTCTTGATGTTGTGCCATCCTGGGAGAAATTGGAAGTCAGATTG
CCGAAAGGTGACCAAATGGCAGAGAGAGATTGGAGGAGCATGCGTAGTAT
GGATTATGAGCGTCGACGTCAACAAGTGGAAGATGAAATGGCAATGGAAA
TGGATTCCCaatatgctgaagatgagtacaGCCAATCACCTTACCAGAGA
GATGTCCAGCATAACGATTACGAATCTTATGGTGACAGAATGCCGGCATA
TCGTGTTCGGGAGGGTCGTCAAAGATACGAAGATGGCGATTTGTATAAGC
CGGTGTCTTACAGAAATGAAGACCTTTCGTATGGAGAGAGGAGAGAAATG
TTCGATGCTTCCCACATGCGTCTTGAGAGAGGGGGATATCAGATCAGCCG
AGATGCTTCACCTTACATGAGATTGCCGTATCGTACCTCAACACGAAGAA
ATGAGGAGCGCTTCTCTGATGAATTCTACACCGAATAATAAACCACTTAT
T Run BLAST on NCBI protein sequence of TCONS_00054783-protein >TCONS_00054783-protein ID=TCONS_00054783-protein|Name=TCONS_00054783-protein|organism=Clytia hemisphaerica|type=polypeptide|length=557bp
MYSKLFLLLFLLVSPNQVSGRKGLYYARHLPRGEYCSFKGYVPGGNKVTV
KRITAPTAKMEDGILGAFGSNMGKIVAGTQGNELIMKGLSKLGKLAKIAP
KLGTALGIFGIGLGIVQAFTDPSPQDILDKANEAIRKLTDEVNHRLDEMK
GYVDHKTINLEKDLAGREYKSLFKMWGNCLKETTKKKVDECQEDAAKDIM
AARPKFALFSSKVHANQKLSTFDVKRLEAALLLFRDYVVLCLASLSALTA
TYADSPSHKLDFSRYAKDLNNEIKWSALYVRNAVSMIEKMHTDGDYCKET
VSCKTKEIWEGWPGAHTQQSVDCQCVFDRAGVSSHTCHENVMIRWDGKRK
LGNDWTYYTTFQKNWEEGGKWIALKLFHERPYMKKLKEAISNYWQNTLLD
VVPSWEKLEVRLPKGDQMAERDWRSMRSMDYERRRQQVEDEMAMEMDSQY
AEDEYSQSPYQRDVQHNDYESYGDRMPAYRVREGRQRYEDGDLYKPVSYR
NEDLSYGERREMFDASHMRLERGGYQISRDASPYMRLPYRTSTRRNEERF
SDEFYTE Run BLAST on NCBI transcript from alignment at scaffold_245:571895..575061+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054783 ID=TCONS_00054783|Name=TCONS_00054783|organism=Clytia hemisphaerica|type=transcript|length=3167bp|location=Sequence derived from alignment at scaffold_245:571895..575061+ (Clytia hemisphaerica)
GGAAAGAGCGCTATGAGAAGAAATCAGTTTAAATACACACAGTGCATGGT
AAGATGATATGAATGGTCATAAAATTTATAAGTCAATTAATGCTAATGGT
ACATGTACTCGAGTGTTCAAGTTAAGctaatgagaatttttttttcattt
taagggctctgaccatagtgaatttttcataattgtcgtgtttaaaatgt
gttttccgACCGATGTaatcaacaaaactatggcatgttatacatttccT
GTTAGAGACAAActattcttgaatctgaaaattcaaaaattgcattgaaa
aaatttgatgaagaagaaaatgaagacttttgcgaggaagagtactTCAA
CTTtcaagagcttagtttcggcgaagaaaaaacattttgaaaattttttc
gcagtagatggtgtatcaaatagtggtttttcatcaatttttcttctgga
ttttgcttaaaaaaacagtcataacttttgacacatctttttagaaaaat
tttccgcaaaatttaaaatagttcaattctttgcNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNatttttcatctggattttgctttaaaaaacagtcat
aacttttgacacatctttttagaaaaattttccgcaaaatttaaaatagt
tcaattcttgtggacagtgtaaagaaattttgaaacaaaaaagttaatta
cccattaaaactaagcactttttgtaaaagaggaacatattattaacatc
tttttaacgttcataacgtcatttttgcaattaaattcttaattactctt
aagtgattcgattaaaaagcaatttataaaggaaattctttgttaaaggt
gttaaggaacctgaaatataacttttatgttcaaataccaaaatcaattt
ttggactatggtcagagcccttaaaatgGGTCGTAAAATGTAGTCATATT
GGGTGGTTAGTTACGTCAAGACACCTAATCTATTTTAAAATTACGACTCT
ggcattgtttttttcttgttatatgactatttttgtgaaaataccCTTCT
TCTTGGAGCTACAAAAATTTAAATACAATTATCATTGTTGTCACGGATTT
GAATGACAtgaatgggggggggggggaacccCNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGTAACTCGG
TCGGTACAGGAAAAACCCTTAGATTGCAATTGATGACCCTCGGTTATTAA
TTAGGTAATTTGGAGTTAAGACTAGGTCTGGCACTCAAATtccgattttc
attttcaaggtcAAGCGAGAAAAGGAAAGGGGATAAACTCTCTCAATTCA
GAACTGGCGACCACCAGATTGATAAACTTACCTGCcataaaagacatttt
tttttgtatttcagATTCTAATAAAGCATCATGTATTCAAAGCTATTTTT
ATTGCTATTTCTGCTGGTATCTCCAAATCAAGTAAGCGGTCGTAAAGGAC
TGTATTACGCACGCCACTTGCCACGAGGAGAATATTGCTCATTCAAAGGG
TATGTACCGGGAGGAAATAAAGTCACCGTGAAAAGGATCACAGCACCGAC
AGCAAAAATGGAAGACGGAATTTTAGGTGCTTTTGGATCAAACATGGGAA
AAATCGTTGCTGGAACACAAGGAAACGAACTGATTATGAAAGGACTTAGC
AAATTAGGAAAACTGGCTAAAATCGCACCCAAATTGGGCACAGCGTTAGG
AATCTTTGGTATCGGTCTTGGTATCGTTCAAGCCTTTACAGATCCATCGC
CTCAGGATATTTTGGATAAAGCCAATGAAGCTATCAGAAAATTAACTGAT
GAAGTCAACCATCGATTGGACGAGATGAAAGGATATGTCGACCATAAGAC
AATCAATCTCGAAAAAGATTTGGCCGGACGCGAGTACAAGTCTTTGTTCA
AAATGTGGGGGAACTGTTTGAAGGagacaacaaaaaagaaagttgaCGAA
TGCCAGGAGGATGCAGCCAAAGATATCATGGCTGCACGACCCAAATTCGC
ACTTTTTTCCAGCAAAGTCCATGCTAACCAAAAACTTTCCACTTTTGACG
TGAAGCGTCTGGAGGCTGCGTTGCTACTTTTCCGTGATTACGTTGTTCTG
TGTTTGGCCAGTCTTTCCGCTTTAACTGCCACGTATGCAGATTCACCAAG
CCATAAGCTAGACTTTAGCCGGTACGCAAAGGATTTGAATAATGAGATAA
AATGGTCTGCATTGTACGTCCGAAACGCAGTGTCCATGATCGAGAAAATG
CATACAGATGGCGACTACTGTAAGGAAACCGTGTCAtgcaaaacaaagga
aatttggGAAGGCTGGCCAGGCGCACATACACAACAAAGCGTGGATTGCC
AATGTGTGTTTGACCGTGCTGGAGTATCAAGCCACACGTGTCATGAGAAT
GTGATGATCAGATGGGATGGCAAAAGAAAGTTAGGAAATGATTGGACATA
TTATACtacttttcaaaagaattggGAAGAGGGTGGCAAATGGATCGCGT
TGAAATTATTCCATGAACGTCCCtacatgaaaaaattgaaagaagcaATC
TCAAATTATTGGCAAAATACACTTCTTGATGTTGTGCCATCCTGGGAGAA
ATTGGAAGTCAGATTGCCGAAAGGTGACCAAATGGCAGAGAGAGATTGGA
GGAGCATGCGTAGTATGGATTATGAGCGTCGACGTCAACAAGTGGAAGAT
GAAATGGCAATGGAAATGGATTCCCaatatgctgaagatgagtacaGCCA
ATCACCTTACCAGAGAGATGTCCAGCATAACGATTACGAATCTTATGGTG
ACAGAATGCCGGCATATCGTGTTCGGGAGGGTCGTCAAAGATACGAAGAT
GGCGATTTGTATAAGCCGGTGTCTTACAGAAATGAAGACCTTTCGTATGG
AGAGAGGAGAGAAATGTTCGATGCTTCCCACATGCGTCTTGAGAGAGGGG
GATATCAGATCAGCCGAGATGCTTCACCTTACATGAGATTGCCGTATCGT
ACCTCAACACGAAGAAATGAGGAGCGCTTCTCTGATGAATTCTACACCGA
ATAATAAACCACTTATT Coding sequence (CDS) from alignment at scaffold_245:571895..575061+ >TCONS_00054783 ID=TCONS_00054783|Name=TCONS_00054783|organism=Clytia hemisphaerica|type=CDS|length=1674bp|location=Sequence derived from alignment at scaffold_245:571895..575061+ (Clytia hemisphaerica)
ATGTATTCAAAGCTATTTTTATTGCTATTTCTGCTGGTATCTCCAAATCA
AGTAAGCGGTCGTAAAGGACTGTATTACGCACGCCACTTGCCACGAGGAG
AATATTGCTCATTCAAAGGGTATGTACCGGGAGGAAATAAAGTCACCGTG
AAAAGGATCACAGCACCGACAGCAAAAATGGAAGACGGAATTTTAGGTGC
TTTTGGATCAAACATGGGAAAAATCGTTGCTGGAACACAAGGAAACGAAC
TGATTATGAAAGGACTTAGCAAATTAGGAAAACTGGCTAAAATCGCACCC
AAATTGGGCACAGCGTTAGGAATCTTTGGTATCGGTCTTGGTATCGTTCA
AGCCTTTACAGATCCATCGCCTCAGGATATTTTGGATAAAGCCAATGAAG
CTATCAGAAAATTAACTGATGAAGTCAACCATCGATTGGACGAGATGAAA
GGATATGTCGACCATAAGACAATCAATCTCGAAAAAGATTTGGCCGGACG
CGAGTACAAGTCTTTGTTCAAAATGTGGGGGAACTGTTTGAAGGagacaa
caaaaaagaaagttgaCGAATGCCAGGAGGATGCAGCCAAAGATATCATG
GCTGCACGACCCAAATTCGCACTTTTTTCCAGCAAAGTCCATGCTAACCA
AAAACTTTCCACTTTTGACGTGAAGCGTCTGGAGGCTGCGTTGCTACTTT
TCCGTGATTACGTTGTTCTGTGTTTGGCCAGTCTTTCCGCTTTAACTGCC
ACGTATGCAGATTCACCAAGCCATAAGCTAGACTTTAGCCGGTACGCAAA
GGATTTGAATAATGAGATAAAATGGTCTGCATTGTACGTCCGAAACGCAG
TGTCCATGATCGAGAAAATGCATACAGATGGCGACTACTGTAAGGAAACC
GTGTCAtgcaaaacaaaggaaatttggGAAGGCTGGCCAGGCGCACATAC
ACAACAAAGCGTGGATTGCCAATGTGTGTTTGACCGTGCTGGAGTATCAA
GCCACACGTGTCATGAGAATGTGATGATCAGATGGGATGGCAAAAGAAAG
TTAGGAAATGATTGGACATATTATACtacttttcaaaagaattggGAAGA
GGGTGGCAAATGGATCGCGTTGAAATTATTCCATGAACGTCCCtacatga
aaaaattgaaagaagcaATCTCAAATTATTGGCAAAATACACTTCTTGAT
GTTGTGCCATCCTGGGAGAAATTGGAAGTCAGATTGCCGAAAGGTGACCA
AATGGCAGAGAGAGATTGGAGGAGCATGCGTAGTATGGATTATGAGCGTC
GACGTCAACAAGTGGAAGATGAAATGGCAATGGAAATGGATTCCCaatat
gctgaagatgagtacaGCCAATCACCTTACCAGAGAGATGTCCAGCATAA
CGATTACGAATCTTATGGTGACAGAATGCCGGCATATCGTGTTCGGGAGG
GTCGTCAAAGATACGAAGATGGCGATTTGTATAAGCCGGTGTCTTACAGA
AATGAAGACCTTTCGTATGGAGAGAGGAGAGAAATGTTCGATGCTTCCCA
CATGCGTCTTGAGAGAGGGGGATATCAGATCAGCCGAGATGCTTCACCTT
ACATGAGATTGCCGTATCGTACCTCAACACGAAGAAATGAGGAGCGCTTC
TCTGATGAATTCTACACCGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054783-exon-scaffold_245-1491911889:571895..571942 | TCONS_00054783-exon-scaffold_245-1491911889:571895..571942 | Clytia hemisphaerica | exon |
| TCONS_00054783-exon-scaffold_245-1510915933:571895..571942 | TCONS_00054783-exon-scaffold_245-1510915933:571895..571942 | Clytia hemisphaerica | exon |
| TCONS_00054783-exon-scaffold_245-1575043694:571895..571942 | TCONS_00054783-exon-scaffold_245-1575043694:571895..571942 | Clytia hemisphaerica | exon |
| TCONS_00054783-exon-scaffold_245-1491911889:573359..575061 | TCONS_00054783-exon-scaffold_245-1491911889:573359..575061 | Clytia hemisphaerica | exon |
| TCONS_00054783-exon-scaffold_245-1510915933:573359..575061 | TCONS_00054783-exon-scaffold_245-1510915933:573359..575061 | Clytia hemisphaerica | exon |
| TCONS_00054783-exon-scaffold_245-1575043694:573359..575061 | TCONS_00054783-exon-scaffold_245-1575043694:573359..575061 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_245 | supercontig | scaffold_245:571895..575061 + |
Blast
The following BLAST results are available for this feature:
|
