TCONS_00054696 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054696
Unique NameTCONS_00054696
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length652

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054696 ID=TCONS_00054696|Name=TCONS_00054696|organism=Clytia hemisphaerica|type=transcript|length=652bp
CATACATAGTGAAATGTTTGGCAAAGTCTagtagttttattttgttttta
ctaATATAGTCTTTGAAAGTGTCTGTAGAAGGCTTTTTATACAAGGGACA
TCGAAGAAGTGATTTAGCAACCTGAGTTACAAATCTAGAATGGTGCACCA
AGGCAAAATGGTTCTCTCAAAAGAGTACAAAACCATGAAAAAGCAATCCA
GTCTATCTAAAATGATTCCCTCAAAGAgtcaatttttggaatttcgacaa
aaatttgacaattttagcttaaattttgggaaaatagtCTCAACGATATC
ATTTTGgacaaaattttctaaattcagtCTCCCTTAGAAAAAAACTCAAT
CTTTTGAACTGAGTAGAATATTTCAGATAGAAGTGAAATAGGAGAGGTTC
CAATTGGAAAGCTTTAATTTCATTTTGTGAAGATTTCTTTGATGAGAATG
ATAGTGAATGAAAAGCTGCATAAATATGGGCCTATGTATGAGGTAGTTAT
AAAGGCTAATATTCCACTGAAACGTAAATTAAACTTTTTCGTGTCACCCA
TTTATCAAAATTGTCTTAGTGTTAACAAGACGTACTTCAAACAGTGTAGA
AAACGTATAGCTAATGATGAGTTGACGATATGAAATAAGGTCGATCCATG
TG
Run BLAST on NCBI

transcript from alignment at scaffold_243:598203..598854

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054696 ID=TCONS_00054696|Name=TCONS_00054696|organism=Clytia hemisphaerica|type=transcript|length=652bp|location=Sequence derived from alignment at scaffold_243:598203..598854 (Clytia hemisphaerica)
CACATGGATCGACCTTATTTCATATCGTCAACTCATCATTAGCTATACGT
TTTCTACACTGTTTGAAGTACGTCTTGTTAACACTAAGACAATTTTGATA
AATGGGTGACACGAAAAAGTTTAATTTACGTTTCAGTGGAATATTAGCCT
TTATAACTACCTCATACATAGGCCCATATTTATGCAGCTTTTCATTCACT
ATCATTCTCATCAAAGAAATCTTCACAAAATGAAATTAAAGCTTTCCAAT
TGGAACCTCTCCTATTTCACTTCTATCTGAAATATTCTACTCAGTTCAAA
AGATTGAGTTTTTTTCTAAGGGAGactgaatttagaaaattttgtcCAAA
ATGATATCGTTGAGactattttcccaaaatttaagctaaaattgtcaaat
ttttgtcgaaattccaaaaattgacTCTTTGAGGGAATCATTTTAGATAG
ACTGGATTGCTTTTTCATGGTTTTGTACTCTTTTGAGAGAACCATTTTGC
CTTGGTGCACCATTCTAGATTTGTAACTCAGGTTGCTAAATCACTTCTTC
GATGTCCCTTGTATAAAAAGCCTTCTACAGACACTTTCAAAGACTATATt
agtaaaaacaaaataaaactactAGACTTTGCCAAACATTTCACTATGTA
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034457XLOC_034457Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054696-exon-scaffold_243-1491911889:598203..598854TCONS_00054696-exon-scaffold_243-1491911889:598203..598854Clytia hemisphaericaexon
TCONS_00054696-exon-scaffold_243-1510915933:598203..598854TCONS_00054696-exon-scaffold_243-1510915933:598203..598854Clytia hemisphaericaexon
TCONS_00054696-exon-scaffold_243-1575043694:598203..598854TCONS_00054696-exon-scaffold_243-1575043694:598203..598854Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:598203..598854 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.323998	0	0	0	0	0	0	0.0533363	1.49134	0.608446	0.773075	0.0488017	0	0.246483	0.340529	0.445424	0.154862	0.679826	0.0918241	0	0.343936	0.0767386	0.329438	0.117195	0.622218	0.815068
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054696 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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