TCONS_00054691 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054691
Unique NameTCONS_00054691
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length350

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054691 ID=TCONS_00054691|Name=TCONS_00054691|organism=Clytia hemisphaerica|type=transcript|length=350bp
CTACGAGCACCCATCAATTTCACATCTTCATGCATTTGTTTTTACACTGC
TGGTTTTCAACTCGTCAAGTTTCTTGGATCCTTTTTGACAAGCTATGGTG
GCGATGGTCAGACAATGAGTGTCATTTTGTTATTTAGCTTTTCTTGTATT
ACATACTTTACCATGATGGTCTTTGCAAATTCACAAATATACATTTTAAT
TGGTAAGTTCATTGTTAAAGGTGAGATGATAATACTATGAACCAGGatgg
gggtcagtactaaaatgtaagacatacatgagtactaaaaggattttcgc
taatttttgacatacccccacctatttttcgaaaatgttattttagtaca
Run BLAST on NCBI

transcript from alignment at scaffold_243:440759..441108

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054691 ID=TCONS_00054691|Name=TCONS_00054691|organism=Clytia hemisphaerica|type=transcript|length=350bp|location=Sequence derived from alignment at scaffold_243:440759..441108 (Clytia hemisphaerica)
tgtactaaaataacattttcgaaaaataggtgggggtatgtcaaaaatta
gcgaaaatccttttagtactcatgtatgtcttacattttagtactgaccc
ccatCCTGGTTCATAGTATTATCATCTCACCTTTAACAATGAACTTACCA
ATTAAAATGTATATTTGTGAATTTGCAAAGACCATCATGGTAAAGTATGT
AATACAAGAAAAGCTAAATAACAAAATGACACTCATTGTCTGACCATCGC
CACCATAGCTTGTCAAAAAGGATCCAAGAAACTTGACGAGTTGAAAACCA
GCAGTGTAAAAACAAATGCATGAAGATGTGAAATTGATGGGTGCTCGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034452XLOC_034452Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054691-exon-scaffold_243-1491911889:440759..441108TCONS_00054691-exon-scaffold_243-1491911889:440759..441108Clytia hemisphaericaexon
TCONS_00054691-exon-scaffold_243-1510915933:440759..441108TCONS_00054691-exon-scaffold_243-1510915933:440759..441108Clytia hemisphaericaexon
TCONS_00054691-exon-scaffold_243-1575043694:440759..441108TCONS_00054691-exon-scaffold_243-1575043694:440759..441108Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:440759..441108 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.5922	1.51543	1.26507	2.46395	0.37637	0.293994	0.349952	0	0.70226	0.540694	0	0.358653	0	0.570093	0.442544	0.320934	0	1.04131	0.276377	0.28302	0.274293	1.11653	1.91286	1.17907	0.825953	1.35764	0	0	0.690826	1.59212
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054691 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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