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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054513 ID=TCONS_00054513|Name=TCONS_00054513|organism=Clytia hemisphaerica|type=transcript|length=4999bpRun BLAST on NCBI protein sequence of TCONS_00054513-protein >TCONS_00054513-protein ID=TCONS_00054513-protein|Name=TCONS_00054513-protein|organism=Clytia hemisphaerica|type=polypeptide|length=727bp MVQEYTSPTRVYEHPFEMVMQAYQRRFPTCKMIPAFLGSDITYEFKSDDGRun BLAST on NCBI transcript from alignment at scaffold_243:90913..116029+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054513 ID=TCONS_00054513|Name=TCONS_00054513|organism=Clytia hemisphaerica|type=transcript|length=25117bp|location=Sequence derived from alignment at scaffold_243:90913..116029+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_243:90913..116029+ >TCONS_00054513 ID=TCONS_00054513|Name=TCONS_00054513|organism=Clytia hemisphaerica|type=CDS|length=39312bp|location=Sequence derived from alignment at scaffold_243:90913..116029+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054513 vs. Swiss-Prot (Human)
Match: S14L1 (SEC14-like protein 1 OS=Homo sapiens GN=SEC14L1 PE=1 SV=2) HSP 1 Score: 712.605 bits (1838), Expect = 0.000e+0 Identity = 351/708 (49.58%), Postives = 485/708 (68.50%), Query Frame = 1
Query: 67 MVQEYTSPTRVYEHPFEMVMQAYQRRFPTCKMIPAFLGSDITYEFKSDDGAVHIAERRCRLHVDAPYIIRKIAGVDHAIFIQRNSLNKLDRTLKIEAWNESFSNRLIIKEHCYYSVHPDNPNWTLFEQDASLDVVSFFGFEAAVEKLAIKAYTSNLKKGKEIINYYINELISEGRTYFPPFQGSQGRPRTISHADKKSSQENTDAIVSLKDLEEETFADDVEDGSXXXXXXXXXXXXPPQPTHKEKIQKVAEPPPLQEYKLDEGLIARYLGELTSIEETRLLQLRRRFQGTHSGKIPSVSVLLRFLRARENSLDKAYEMLKNSLHWRRQHHVDKILETWNPPGALLEYYPGGWHYHDKDGRPVYIVKIGSMDFKGLLKTVGETGFIKQVVSINEEGLKKCVEATDIYKKPITNWTLIVDMDGLNMRHLWRPGIRALLKMIELVEANYPETMGQLLIVRAPKVFGVLWTLLSPFINENTRKKFMIYTGDDYQGAGGLADYLPKEYIPQFLGGSCDCGIPVGKTVPKQFYKYDNIGEASESESNWLDTDLYHIANFMKGSPHDVILTVAEAESVLTWDFDVIEGDCHFQVLRHKRPREASMVSTTCLGDTSITKPS----------IRPGIDAQVVERPILCRQGDSVQGTHICQQPGVYILQWKF------SNSGTSR-----QSLKIQN-KCKLMLYYDILPSKDFRG 2124
MVQ+Y SP RVY++PFE++M AY+RRFPTC +IP F+GSD EFKS+DGA+H+ ERRC+L VDAP +++KIAGVD+ F+Q+NSLN +RTL IEA+NE+FSNR+II EHC Y+VHP+N +WT FEQ ASLD+ SFFGFE+ VEK+A+K YTSN+KKGKEII YY+ +L EG T+ P + + + + Q + A+V + +E + D P+P V P + KLD I RYLG+LT ++E+ L++LR+ Q TH GKIP +LRFLRAR+ ++DKA E++ SL WR+QH VD ILETW PP L +YY GGWH+HDKDGRP+Y++++G MD KGL++ +GE ++ V+SINEEGL++C E T ++ +PI++WT +VD++GLNMRHLWRPG++ALL++IE+VEANYPET+G+LLI+RAP+VF VLWTL+SPFI++NTR+KF+IY G+DYQG GGL DY+ KE IP FL G C C +P G VPK Y+ E +E W +T +Y A+ KG+PH++++ + +A SV+TWDFDV +GD F + KR + + LG SIT P + G D +VE P++C++G+SVQG+H+ + PG YILQWKF + S R SL++ + KCK+M Y +++ S+DFRG
Sbjct: 1 MVQKYQSPVRVYKYPFELIMAAYERRFPTCPLIPMFVGSDTVNEFKSEDGAIHVIERRCKLDVDAPRLLKKIAGVDYVYFVQKNSLNSRERTLHIEAYNETFSNRVIINEHCCYTVHPENEDWTCFEQSASLDIKSFFGFESTVEKIAMKQYTSNIKKGKEIIEYYLRQLEEEGITFVPRWSPPSITTSSETSSSSSKKQAASMAVVIPEAALKEGLSGDALSSPSA-----------PEPV-------VGTP----DDKLDADYIKRYLGDLTPLQESCLIRLRQWLQETHKGKIPKDEHILRFLRARDFNIDKAREIMCQSLTWRKQHQVDYILETWTPPQVLQDYYAGGWHHHDKDGRPLYVLRLGQMDTKGLVRALGEEALLRYVLSINEEGLRRCEENTKVFGRPISSWTCLVDLEGLNMRHLWRPGVKALLRIIEVVEANYPETLGRLLILRAPRVFPVLWTLVSPFIDDNTRRKFLIYAGNDYQGPGGLLDYIDKEIIPDFLSGECMCEVPEGGLVPKSLYRTAEELE-NEDLKLWTET-IYQSASVFKGAPHEILIQIVDASSVITWDFDVCKGDIVFNIYHSKRSPQPPKKDS--LGAHSITSPGGNNVQLIDKVWQLGRDYSMVESPLICKEGESVQGSHVTRWPGFYILQWKFHSMPACAASSLPRVDDVLASLQVSSHKCKVMYYTEVIGSEDFRG 682 The following BLAST results are available for this feature:
BLAST of TCONS_00054513 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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