TCONS_00054498 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054498
Unique NameTCONS_00054498
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1110

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054498 ID=TCONS_00054498|Name=TCONS_00054498|organism=Clytia hemisphaerica|type=transcript|length=1110bp
CGTTGCGTCATTTTAGTAATAACATCTcttctttctctctctctctgctT
GTAaacttttgacaatttttttcttcagttcCTTGAAGACTGATTGACAG
CCTCATTGTGTCGTGACGTCACTGAAAGCTTATAAAAGCGGTTTCGGATT
TTTTGTCAAGATCATTCATTAAATGTAATGAGACGCTGAGCAGTCAAAAC
GTCTTAAAAGAATTTGTTATCGACACTGAATGAAGAGTCCTATGAGATAT
TGAACTGATatacaaagaaacaaacaaagatttttaaacatgAGCGTATT
ACACGGTATCTCGAAGAAGTTTCTCTCaaccaagaagaaaaacaaGGCAA
GAACGTACACCAATTCCACAAACATTGCTATATTTGGAGCTTCAGGTGTC
GGCAAAACAACCATTATCAATTCGTTCGCCAAATCAATTTACGGCAAAAC
GACGATTTTCCGACCGACGATTACTGAGTGTTACGAGCGCAAAATTATCC
TTCGCTCACAAGATGGGACTGTTTGTAAACACGAATTATCTATTTTGGAT
ACAGCTGGGGATTTGAGATATGACTTTCAGACTTTACACAAACAAGCTAT
CCAAAATTCGGAAGCGTTTGTTCTGGTTTTCTCACTTGATGACGaggaca
gtttgaaagaaatggaATATATTCTACAAGACATTGATTCCATCAAGAAA
TCCAAGAATACCCCGATTCTTATCATCGCTAACAAATCGGATTTAGTAAA
CAAGAAATCAATGCATTTGCAGCGAATTCGAAATAAACTTGCGATGTTGA
ACCGGGGGTTGTGTTTCGAGAAATCTGCATTGAGAACAGATGAATTGAAT
GAATGTTTTGTTTCCCTTTTAACGAAAGTTGAGAAGCGAAAAGGGATCGA
TCGATCTTTCTATGGTGTACAAATTATGTGCTAATCGAAAATCAAATACC
AACTCAACAAGAAACGAACTATTTTATGTAAATATCTACCGTCTAGTTTA
AATAGTGTAAATTCTCTTTTTAACTCTTTGTACATATGTTAATATGGCtc
ttaaaaattataaaatcgaAAGTAATATATCTGGCAACAAAATATACTGt
ttgaaatgaa
Run BLAST on NCBI

protein sequence of TCONS_00054498-protein

>TCONS_00054498-protein ID=TCONS_00054498-protein|Name=TCONS_00054498-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
MSVLHGISKKFLSTKKKNKARTYTNSTNIAIFGASGVGKTTIINSFAKSI
YGKTTIFRPTITECYERKIILRSQDGTVCKHELSILDTAGDLRYDFQTLH
KQAIQNSEAFVLVFSLDDEDSLKEMEYILQDIDSIKKSKNTPILIIANKS
DLVNKKSMHLQRIRNKLAMLNRGLCFEKSALRTDELNECFVSLLTKVEKR
KGIDRSFYGVQIMC
Run BLAST on NCBI

transcript from alignment at scaffold_242:1511705..1512814

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054498 ID=TCONS_00054498|Name=TCONS_00054498|organism=Clytia hemisphaerica|type=transcript|length=1110bp|location=Sequence derived from alignment at scaffold_242:1511705..1512814 (Clytia hemisphaerica)
ttcatttcaaaCAGTATATTTTGTTGCCAGATATATTACTTtcgatttta
taatttttaagaGCCATATTAACATATGTACAAAGAGTTAAAAAGAGAAT
TTACACTATTTAAACTAGACGGTAGATATTTACATAAAATAGTTCGTTTC
TTGTTGAGTTGGTATTTGATTTTCGATTAGCACATAATTTGTACACCATA
GAAAGATCGATCGATCCCTTTTCGCTTCTCAACTTTCGTTAAAAGGGAAA
CAAAACATTCATTCAATTCATCTGTTCTCAATGCAGATTTCTCGAAACAC
AACCCCCGGTTCAACATCGCAAGTTTATTTCGAATTCGCTGCAAATGCAT
TGATTTCTTGTTTACTAAATCCGATTTGTTAGCGATGATAAGAATCGGGG
TATTCTTGGATTTCTTGATGGAATCAATGTCTTGTAGAATATATtccatt
tctttcaaactgtcctCGTCATCAAGTGAGAAAACCAGAACAAACGCTTC
CGAATTTTGGATAGCTTGTTTGTGTAAAGTCTGAAAGTCATATCTCAAAT
CCCCAGCTGTATCCAAAATAGATAATTCGTGTTTACAAACAGTCCCATCT
TGTGAGCGAAGGATAATTTTGCGCTCGTAACACTCAGTAATCGTCGGTCG
GAAAATCGTCGTTTTGCCGTAAATTGATTTGGCGAACGAATTGATAATGG
TTGTTTTGCCGACACCTGAAGCTCCAAATATAGCAATGTTTGTGGAATTG
GTGTACGTTCTTGCCttgtttttcttcttggttGAGAGAAACTTCTTCGA
GATACCGTGTAATACGCTcatgtttaaaaatctttgtttgtttctttgta
tATCAGTTCAATATCTCATAGGACTCTTCATTCAGTGTCGATAACAAATT
CTTTTAAGACGTTTTGACTGCTCAGCGTCTCATTACATTTAATGAATGAT
CTTGACAAAAAATCCGAAACCGCTTTTATAAGCTTTCAGTGACGTCACGA
CACAATGAGGCTGTCAATCAGTCTTCAAGgaactgaagaaaaaaattgtc
aaaagttTACAagcagagagagagagaaagaagAGATGTTATTACTAAAA
TGACGCAACG

Coding sequence (CDS) from alignment at scaffold_242:1511705..1512814

>TCONS_00054498 ID=TCONS_00054498|Name=TCONS_00054498|organism=Clytia hemisphaerica|type=CDS|length=645bp|location=Sequence derived from alignment at scaffold_242:1511705..1512814 (Clytia hemisphaerica)
TTAGCACATAATTTGTACACCATAGAAAGATCGATCGATCCCTTTTCGCT
TCTCAACTTTCGTTAAAAGGGAAACAAAACATTCATTCAATTCATCTGTT
CTCAATGCAGATTTCTCGAAACACAACCCCCGGTTCAACATCGCAAGTTT
ATTTCGAATTCGCTGCAAATGCATTGATTTCTTGTTTACTAAATCCGATT
TGTTAGCGATGATAAGAATCGGGGTATTCTTGGATTTCTTGATGGAATCA
ATGTCTTGTAGAATATATtccatttctttcaaactgtcctCGTCATCAAG
TGAGAAAACCAGAACAAACGCTTCCGAATTTTGGATAGCTTGTTTGTGTA
AAGTCTGAAAGTCATATCTCAAATCCCCAGCTGTATCCAAAATAGATAAT
TCGTGTTTACAAACAGTCCCATCTTGTGAGCGAAGGATAATTTTGCGCTC
GTAACACTCAGTAATCGTCGGTCGGAAAATCGTCGTTTTGCCGTAAATTG
ATTTGGCGAACGAATTGATAATGGTTGTTTTGCCGACACCTGAAGCTCCA
AATATAGCAATGTTTGTGGAATTGGTGTACGTTCTTGCCttgtttttctt
cttggttGAGAGAAACTTCTTCGAGATACCGTGTAATACGCTcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034361XLOC_034361Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054498-proteinTCONS_00054498-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054498-exon-scaffold_242-1491911889:1511705..1512814TCONS_00054498-exon-scaffold_242-1491911889:1511705..1512814Clytia hemisphaericaexon
TCONS_00054498-exon-scaffold_242-1510915933:1511705..1512814TCONS_00054498-exon-scaffold_242-1510915933:1511705..1512814Clytia hemisphaericaexon
TCONS_00054498-exon-scaffold_242-1575043694:1511705..1512814TCONS_00054498-exon-scaffold_242-1575043694:1511705..1512814Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1511705..1512814 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.315008	0.537569	0.267501	0.174472	0.584108	0.46157	3.39181	4.21803	2.55497	9.90522	4.10899	4.53678	30.2992	23.7423	70.4084	41.6546	22.7903	18.845	19.3382	13.9287	7.11926	5.79373	11.1515	10.5898	6.21461	6.45192	46.2174	28.2924	11.5379	8.86102
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00054498 vs. Swiss-Prot (Human)
Match: DIRA2 (GTP-binding protein Di-Ras2 OS=Homo sapiens GN=DIRAS2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.297e-16
Identity = 57/187 (30.48%), Postives = 96/187 (51.34%), Query Frame = 2 
Query:  359 TNSTNIAIFGASGVGKTTIINSFAKSIYGKTTIFRPTITECYERKIILRSQDGTVCKHELSILDTAGDLRYDFQTLHKQAIQNSEAFVLVFSLDDEDSLKEMEYILQDIDSIKKS-KNTPILIIANKSDLVNKKSMHLQRIRNKLAMLNRGLCFEKSALRTDELNECFVSLLTKVEKRKGIDRSFYG 916
            +N   +A+FGA GVGK++++  F K  + ++ I  PT+ + Y R++I  S D ++C   L I DT G   + F  + + +I    AF+LV+S+    SL+E++ I + I  IK   ++ PI+++ NK D    + +        LA   +    E SA     + E F  LL  +EKR+ +     G
Sbjct:    5 SNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYI--PTVEDTY-RQVI--SCDKSICT--LQITDTTGS--HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEA-EALARTWKCAFMETSAKLNHNVKELFQELLN-LEKRRTVSLQIDG 180
The following BLAST results are available for this feature:
BLAST of TCONS_00054498 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DIRA24.297e-1630.48GTP-binding protein Di-Ras2 OS=Homo sapiens GN=DIR... [more]
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