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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054287 ID=TCONS_00054287|Name=TCONS_00054287|organism=Clytia hemisphaerica|type=transcript|length=3093bpRun BLAST on NCBI protein sequence of TCONS_00054287-protein >TCONS_00054287-protein ID=TCONS_00054287-protein|Name=TCONS_00054287-protein|organism=Clytia hemisphaerica|type=polypeptide|length=586bp MICSRVMNHSTTGLVASNHNVTSDIDFGIDKDVTLIEDNREYNPVVFDVLRun BLAST on NCBI transcript from alignment at scaffold_242:1629780..1672472+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054287 ID=TCONS_00054287|Name=TCONS_00054287|organism=Clytia hemisphaerica|type=transcript|length=42693bp|location=Sequence derived from alignment at scaffold_242:1629780..1672472+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_242:1629780..1672472+ >TCONS_00054287 ID=TCONS_00054287|Name=TCONS_00054287|organism=Clytia hemisphaerica|type=CDS|length=31698bp|location=Sequence derived from alignment at scaffold_242:1629780..1672472+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054287 vs. Swiss-Prot (Human)
Match: RGPS2 (Ras-specific guanine nucleotide-releasing factor RalGPS2 OS=Homo sapiens GN=RALGPS2 PE=1 SV=1) HSP 1 Score: 338.191 bits (866), Expect = 4.733e-103 Identity = 214/583 (36.71%), Postives = 316/583 (54.20%), Query Frame = 2
Query: 308 EDNREYNPVVFDVLKVSADEIAQQLTLIDLPLFQHVEPEELTSCSWTSKRKHDNCPNIVKATKRFNQVSYWVTREILDTNTAKGRAERIAYFIKVAKKLQELNNLNCLKAVVSGLQCTPIYRLNKTWNVVPKRDKEKLEKLNELVCEENNSSKLRLHLQTTKL-PCIPYLGMYLTDLTYINTIHPPTGGL--DVERTNKMNEILRIIADYQQSL-YDFKPIYAVQNYLNSVKYIDELQKFMEDENYKLSCQIEPTELQTRAERNGSTGKRETVSESDDTYRLYPKQPASKSNSLNPRRTGSSINPKSASLNLPSTPFNQHRSPSPNRKDFVP-GHRKVKSLGSTQIFLQXXXXXXXXXXXXXXXXXXXXXXRYNLVDDSILEDNLNT---------------------DIRSSTSYDS----GLDHDEPETHPIIRSNYI----------SEDTKPEFY---FKLQGFLKRKTLKRNATSPKVANWQRYWVGITCSHLVYFLPKYRAFGGHDRNNFKENAEKILPLFGSDVCECNEEGS---FQLTDESGANVYRFRAGTNLNRKLWMDFIKEASNGGMKEPP 1918
E + ++ VVFDVLKV+ +E A Q+TL+D+P+F+ ++P+EL+SC W K K+ + PN V T+RFN VS+WV REIL T K RAE ++++IK AKKL ELNNL+ L AVVSGLQ PI+RL KTW ++ ++DK EKL ++ +E+N +LR ++ + K+ PCIPYLG+YL+DLTYI++ +P TG + + +R+N MN ILRII+D QQS YD + VQ YLNSV+YI+ELQKF+ED+NYKLS +IEP G++ R S D + P+ AS P+ S+ + A LP TP PSP ++ +P GHRK SLG I + + ++ + +L+DDS++E + + ++ TS+ + L H + R+ Y SED Y +QG L+RKTL + P VA+W +YW + + L Y+ K + +R +FK + K + + G V ++ F LTD N Y+F+AG +N LW + A ++ P
Sbjct: 33 ELKKSFDAVVFDVLKVTPEEYAGQITLMDVPVFKAIQPDELSSCGWNKKEKYSSAPNAVAFTRRFNHVSFWVVREILHAQTLKIRAEVLSHYIKTAKKLYELNNLHALMAVVSGLQSAPIFRLTKTWALLSRKDKTTFEKLEYVMSKEDNYKRLRDYISSLKMTPCIPYLGIYLSDLTYIDSAYPSTGSILENEQRSNLMNNILRIISDLQQSCEYDIPMLPHVQKYLNSVQYIEELQKFVEDDNYKLSLKIEP----------GTSTPRSAASRED---LVGPEVGAS------PQSGRKSVAAEGAL--LPQTP------PSP--RNLIPHGHRKCHSLGYNFIHKMNTAEFKSATFPNAGPR--------HLLDDSVMEPHAPSRGQAESSTLSSGISIGSSDGSELSEETSWPAFERNRLYHSLGPVTRVARNGYRSHMKASSSAESEDLAVHLYPGAVTIQGVLRRKTLLKEGKKPTVASWTKYWAALCGTQLFYYAAK--SLKATERKHFKSTSNKNVSVIGWMVMMADDPEHPDLFLLTDSEKGNSYKFQAGNRMNAMLWFKHLSAACQSNKQQVP 576 The following BLAST results are available for this feature:
BLAST of TCONS_00054287 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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