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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054193 ID=TCONS_00054193|Name=TCONS_00054193|organism=Clytia hemisphaerica|type=transcript|length=1111bp
ggtaaaaatattttctttcgtCAGATAATATAATCGTAAATAAATAACTG
GAactaaaaattaacattttataaaagatacTTATAGTTCATATTAtcat
agatttttaaaaagtttatccttGGATAAAACCAGCTTCAAGGCTCTTTT
GCTGGTTGACATGGTTACAATGAGTTTACAACACAAACTCTATTTTCTAC
CAGAGAAAGGAGTGGTTTACAACGGTTTCCATAGTAACTCATGACGTCAA
TCTGTATTTGTATCTTGATCTTACTCTGTGAGAATATTCAAACAGCAGAG
CCTTCGTAAATCACAAGCTTAGAACTGAACCAAATAACTGCGCAGAACAA
ATATTGGAATAAGGTAATCCACAGAATTTCAATATCTGGATTGGCTGTGC
CACATCTCTAACCCAACCGcagaaaataataaattttctcAGGCATCCAA
TGAAGGAACGACTTGGACCCATTAGCattaaatatatttcattttttcaa
caaaagattgATAAGTGCCACGCCCAGCAGTACAATCCATAGAAATACTG
TTCAATTTTTCGCCCCAAGTTGCATGTTTCATTTTCTGTAAAGTATAAAA
TTTGACTTGTAGCCTGAACTCtatttctttgaagtttttgaacTTCATAG
AACATAAAACGTCTGTTCGATGTCGATTTTCTGTAGGGTCAATCCCTTTA
GTGGACCATAAAAATTGGTAGATGGACTTTTGATCTTTTTCAGGATCATT
GGTTGATTTGAAGGGAGTTTCAACGCCACCAAATTTGATTTACAATAATT
CCATATTCGGTGCAATTTCCATTTTAACAGTGTAGTCTGCAGCTGAATAT
AATTTCAGGGTCTGTTCATTTGTGAAGCGTTCTCCGTCCTGTTTGAAGCA
AGCTGGAGTGTCATCTTTATCACGTGATATGGTGAATGAAGCTTTGAACT
GCGTTTGACTGCCATAAGAAGCGATGTTCTGTTTGTTGTTGCCGTTGTTG
ATATTGCTGTTCTGACTGCTTGTTAAGTTAGTGTTGCTCAGACTGGACCT
CGACTTCCGATCTGGTAAAAAAGAACAGAAATTCTTAAATTATCTGGTCA
GTACACATTCG Run BLAST on NCBI transcript from alignment at scaffold_242:168747..170887+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054193 ID=TCONS_00054193|Name=TCONS_00054193|organism=Clytia hemisphaerica|type=transcript|length=2141bp|location=Sequence derived from alignment at scaffold_242:168747..170887+ (Clytia hemisphaerica)
ggtaaaaatattttctttcgtCAGATAATATAATCGTAAATAAATAACTG
GAactaaaaattaacattttataaaagatacTTATAGTTCATATTAtcat
agatttttaaaaagtttatccttGGATAAAACCAGCTTCAAGGCTCTTTT
GCTGGTTGACATGGTTACAATGAGTTTACAACACAAACTCTATTTTCTAC
CAGAGAAAGGAGTGGTTTACAACGGTTTCCATAGTAACTCATGACGTCAA
TCTGTATTTGTATCTTGATCTTACTCTGTGAGAATATTCAAACAGCAGAG
CCTTCGTAAATCACAAGCTTAGAACTGAACCAAATAACTGCGCAGAACAA
ATATTGGAATAAGGTAATCCACAGAATTTCAATATCTGGATTGGCTGTGC
CACATCTCTAACCCAACCGcagaaaataataaattttctcAGGCATCCAA
TGAAGGAACGACTTGGACCCATTAGCattaaatatatttcattttttcaa
caaaagattgATAAGTGCCACGCCCAGCAGTACAATCCATAGAAATACTG
TTCAATTTTTCGCCCCAAGTTGCATGTTTCATTTTCTGTAAAGTATAAAA
TTTGACTTGTAGCCTGAACTCtatttctttgaagtttttgaacTTCATAG
AACATAAAACGTCTGTTCGATGTCGATTTTCTGTAGGGTCAATCCCTTTA
GTGGACCATAAAAATTGGTAGATGGACTTTTGATCTTTTTCAGGATCATT
GGTTGATTTGAAGGGAGTTTCAACGCCACCAAATTTGATATACCTGAAAA
AATATGTGATAAATAAAAATCATTGAGTGCTCAAGAAAATTTAAGTGGGA
AATCGAGAAATTATTTTAGATCCTAAAGTCATGGCCATGGGAAAATGCTC
TGATGTATTCTCAAAATGGAAATGACCTTTTTGGAAGTGGATGAAGTATT
CTAAAGAATATGTGAAAGAGGAAGTTTACTCATTTAACTCAAGTATACGC
CGACCTTAAATCAAAGGTTAAGGTATCAAATCTACCGGAAAATAGCAATA
CCTAAGAgcgaaagtttttattttatatttcttgAAGTTGTAGGTCAAAA
GGATGAGTGGGGATTTCCTATTTGagccagatgagatggagtttttataa
gatactttaataattggtcatttaaaataataaaaatgacgcgttcttta
ggaaaagtaacaaaattgttttattactggttaacgaccaaccaaatcaa
ataagagcttgtaaaaactccatctcgtctcAATTGAGCTTGGGAGATTT
TAAAACTCTCTAGTTTTTGTAATATAAACATGATTAACATAAAGTTGATA
AACAAGTGCGCTATATCCAGTCCTCGTCTAGGCCAAAACataatttaatg
ttttcataaCGTAGGATATCTCTTTTGAAACAAGATACTGAGACGAAACA
AAAAGTTAAGGACTGTTTGTATGGTGGCTCCTTAATACtgacaaaaaatc
acaaattctAAGCCCTCAATGGTGTTATTGAGagtaaaaataatagattt
tTAATGTTCTTGTTGAATTTCATAACAGCTCATTCATCTGAACATGGCAT
TTATCCTTTGATCAGGTTTAAGCGCTTGACGCAATCGATAACTGACGAAA
ACTCGAGCCTGTGGGAAGAATTAACCACTCAAATCTAGATTATGTGAGAA
AAACAAATCTCATACATTGATAATGAAGCCCCGTCTAAATCTTACTTCTG
TCAACCTGATTGATGATGGTATGTCTGAATAATCTGAACAGCACTAGATA
TAAGCCGAAGTAACAGGACTTACAATAATTCCATATTCGGTGCAATTTCC
ATTTTAACAGTGTAGTCTGCAGCTGAATATAATTTCAGGGTCTGTTCATT
TGTGAAGCGTTCTCCGTCCTGTTTGAAGCAAGCTGGAGTGTCATCTTTAT
CACGTGATATGGTGAATGAAGCTTTGAACTGCGTTTGACTGCCATAAGAA
GCGATGTTCTGTTTGTTGTTGCCGTTGTTGATATTGCTGTTCTGACTGCT
TGTTAAGTTAGTGTTGCTCAGACTGGACCTCGACTTCCGATCTGGTAAAA
AAGAACAGAAATTCTTAAATTATCTGGTCAGTACACATTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054193-exon-scaffold_242-1491911889:168747..169535 | TCONS_00054193-exon-scaffold_242-1491911889:168747..169535 | Clytia hemisphaerica | exon |
| TCONS_00054193-exon-scaffold_242-1510915933:168747..169535 | TCONS_00054193-exon-scaffold_242-1510915933:168747..169535 | Clytia hemisphaerica | exon |
| TCONS_00054193-exon-scaffold_242-1575043694:168747..169535 | TCONS_00054193-exon-scaffold_242-1575043694:168747..169535 | Clytia hemisphaerica | exon |
| TCONS_00054193-exon-scaffold_242-1491911889:170566..170887 | TCONS_00054193-exon-scaffold_242-1491911889:170566..170887 | Clytia hemisphaerica | exon |
| TCONS_00054193-exon-scaffold_242-1510915933:170566..170887 | TCONS_00054193-exon-scaffold_242-1510915933:170566..170887 | Clytia hemisphaerica | exon |
| TCONS_00054193-exon-scaffold_242-1575043694:170566..170887 | TCONS_00054193-exon-scaffold_242-1575043694:170566..170887 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:168747..170887 + |
Blast
BLAST of TCONS_00054193 vs. Swiss-Prot (Human)
Match: CNRP1 (CB1 cannabinoid receptor-interacting protein 1 OS=Homo sapiens GN=CNRIP1 PE=1 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 3.223e-18 Identity = 42/140 (30.00%), Postives = 74/140 (52.86%), Query Frame = -2
Query: 532 KASFTISRDKDDTPACFKQDGERFTNEQTLKLYSAADYTVKMEIAPN-MELL*IKFGGVETPFK-STNDPEKDQKSIYQFLWSTKGIDPTENRHRTDVLCSMKFKNFKEIEFRLQVKFYTLQKMKHATWGEKLNSISMDC 945
+ S + +D P +K DG+RF +T+KL + + Y V+++I P+ +++ I GGV P + + +P+ D + +Y + T+G+ PT++ R + +M F + E QVKFY K H WG + I +C
Sbjct: 9 RLSIALRIQPNDGPVFYKVDGQRFGQNRTIKLLTGSSYKVEVKIKPSTLQVENISIGGVLVPLELKSKEPDGD-RVVYTGTYDTEGVTPTKSGERQPIQITMPFTDIGTFETVWQVKFYNYHKRDHCQWGSPFSVIEYEC 147
The following BLAST results are available for this feature:
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