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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054187 ID=TCONS_00054187|Name=TCONS_00054187|organism=Clytia hemisphaerica|type=transcript|length=719bp
tctcagataaaatataaaatctttagtacaaaataaaacaatgagTGCtt
cccaacaacaacaaccaaaaGAAGAAGAAACGAAGAATCCAGAAGAAGAA
ATCGACGACGACGAAGAAattgatgatgaagaagaagaggatTTATTTAA
TAAACGTATCGAAAATTCTGGATGTTCAAATCAACATTACCAATTACAGG
ATTGTTATGACGAGAAGAAAGATTGGCGNAAATGCAGTAAAGAAATGCTG
CAATTCAAAAAATGTATGGATGAACAAATCAAAGCAAAACATGCagcaaa
gaaaaaatgaagaggCCAGgtgAAGTCCAGAGACTTGCTTGAAGGTAGAA
TGCTAGTATCTCATGCGTGTAATGCGTTGAAAAACTGGAATGGGAGGAAG
ATACTGATTTGGAAAAGAATAACTTTCAATGCTGCAAACAAATAGATATC
TCGACGCAAGGTTTTGATCCTCCCATTTGTTACTGTTTGAGCTTTTAGCT
AGCTGCTATATTTATATTGTAGAGAAATTATCGTGTGTGACTTTGTATGT
ATGAGAAGATATTGGACAATCAATATTATTTATTGAGACTTTTCTCCCTG
TAAATGATAGTAAATAATCTTAGAACATTTGTTTCAGTTTCAATcagttt
taaaaaaaacacaCTTTCGGAATGATTTTTCATAATTAGAtacaattaaa
ttttaaaagagaAATAATT Run BLAST on NCBI transcript from alignment at scaffold_242:136717..138738+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054187 ID=TCONS_00054187|Name=TCONS_00054187|organism=Clytia hemisphaerica|type=transcript|length=2022bp|location=Sequence derived from alignment at scaffold_242:136717..138738+ (Clytia hemisphaerica)
tctcagataaaatataaaatctttagtacaaaataaaacaatgagTGCtt
cccaacaacaacaaccaaaaGAAGAAGAAACGAAGAATCCAGAAGAAGAA
ATCGACGACGACGAAGAAattgatgatgaagaagaagaggatTTATTTAA
TAAACGTATCGAAAATTCTGGATGTTCAAATCAACATTACCAATTACAGG
TTTTTAGATTTGTTGcactgatgtttttttttcacaaccATTTTCCTCGT
TGTTTGTCGAGATTGGATGAATTTCAAAAGCTCGGAATATGTAGTTTACG
CCATAAACAGCTCCAGGCTTATAGGCCTTATGAGGTtgacgctcgaaacg
aaggaagatatgacataGCCTAGAAGTACGTCAATCATCAAGTTCGTTTT
CTTTGATCCTTTGACAACACTTCAGAGTAAAAAGATCTggggtaaaattt
caaatgctTTAAATAGATAAACGAaaattttcaagcaatttttagGTCAA
cggaatcaaaagaaaaaacttttaatcGGTGGTAATAATTTCCTTTATTT
TGTCACTCAGGATTGTTATGACGAGAAGAAAGATTGGCGCAAATGCAGTA
AAGAAATGCTGCAATTCAAAAAATGTATGGATGAACAAATCAAAGCAAAA
CATGCagcaaagaaaaaatgaagaggCCAGGNAAATGCAGTAAAGAAATG
CTGCAATTCAAAAAATGTATGGATGAACAAATCAAAGCAAAACATGCagc
aaagaaaaaatgaagaggCCAGGTAAGGTcaatctttgaaaattattaAG
GGTATAAAATAGACTTTTCCTCCCTTTCCTTGAGAACTTTAACGCATTAC
AAAGGTTCAAGCCTCTCTACGTTTACAGTTGTTCCGACAGCTTTCCTAGC
ACCAGCAAAAAAGAAACTTCTCGGTcacttagaccatgttcagacgttac
ggttccggtATGGTTTCCTTTACGGATCGATGaaagtgttcatattggtt
tcggaacgtttcggagaaAGAAatcggagcagttccgttccgatgaaaat
agtagAGTGAAACCGTTTccatctgttttgctttgtgacgtcttcttttt
ttatttttgacgtttcgaattttgaagttcacacttgtttcggaaccgtt
tcgtttcggaacaatacggaaccgtaacgtctgaacatggtcttacaGTT
TGGTAAAAATACAGTGAAAATGAGGAACTGTTTATTCTTTGTGCATATGT
TTCGAAACAAAGCAAGCTCCACACAGCATGATTTGGCGTCTCTTTGCTGA
TGATCCCTTGACagtttctttaatttttcatcaagtattcttcaaaaaaa
ttaaaaatatatgcGTGGTATAAGTAGGGAGATCTGAGAttgattttgta
aatctttcccCTGGCATTGATTGATATtgaactaaataaaataaataata
aatgacaattttcctgTTTTCGCATTGAGCTGTAGGTGATCTTTTCGGTA
TTGAATAAGTAGGATTGTAAACACAAAATTGAGGTATTTCCTGTAACAGT
TTTTACTCCTATTCTCTATTTTggcttttctgatttttttgtttttttgt
ttttactttgtttttattttaggtgAAGTCCAGAGACTTGCTTGAAGGTA
GAATGCTAGTATCTCATGCGTGTAATGCGTTGAAAAACTGGAATGGGAGG
AAGATACTGATTTGGAAAAGAATAACTTTCAATGCTGCAAACAAATAGAT
ATCTCGACGCAAGGTTTTGATCCTCCCATTTGTTACTGTTTGAGCTTTTA
GCTAGCTGCTATATTTATATTGTAGAGAAATTATCGTGTGTGACTTTGTA
TGTATGAGAAGATATTGGACAATCAATATTATTTATTGAGACTTTTCTCC
CTGTAAATGATAGTAAATAATCTTAGAACATTTGTTTCAGTTTCAATcag
ttttaaaaaaaacacaCTTTCGGAATGATTTTTCATAATTAGAtacaatt
aaattttaaaagagaAATAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054187-exon-scaffold_242-1491911889:136717..136915 | TCONS_00054187-exon-scaffold_242-1491911889:136717..136915 | Clytia hemisphaerica | exon |
| TCONS_00054187-exon-scaffold_242-1510915933:136717..136915 | TCONS_00054187-exon-scaffold_242-1510915933:136717..136915 | Clytia hemisphaerica | exon |
| TCONS_00054187-exon-scaffold_242-1575043694:136717..136915 | TCONS_00054187-exon-scaffold_242-1575043694:136717..136915 | Clytia hemisphaerica | exon |
| TCONS_00054187-exon-scaffold_242-1491911889:137277..137304 | TCONS_00054187-exon-scaffold_242-1491911889:137277..137304 | Clytia hemisphaerica | exon |
| TCONS_00054187-exon-scaffold_242-1510915933:137277..137304 | TCONS_00054187-exon-scaffold_242-1510915933:137277..137304 | Clytia hemisphaerica | exon |
| TCONS_00054187-exon-scaffold_242-1575043694:137277..137304 | TCONS_00054187-exon-scaffold_242-1575043694:137277..137304 | Clytia hemisphaerica | exon |
| TCONS_00054187-exon-scaffold_242-1491911889:137397..137488 | TCONS_00054187-exon-scaffold_242-1491911889:137397..137488 | Clytia hemisphaerica | exon |
| TCONS_00054187-exon-scaffold_242-1510915933:137397..137488 | TCONS_00054187-exon-scaffold_242-1510915933:137397..137488 | Clytia hemisphaerica | exon |
| TCONS_00054187-exon-scaffold_242-1575043694:137397..137488 | TCONS_00054187-exon-scaffold_242-1575043694:137397..137488 | Clytia hemisphaerica | exon |
| TCONS_00054187-exon-scaffold_242-1491911889:138339..138738 | TCONS_00054187-exon-scaffold_242-1491911889:138339..138738 | Clytia hemisphaerica | exon |
| TCONS_00054187-exon-scaffold_242-1510915933:138339..138738 | TCONS_00054187-exon-scaffold_242-1510915933:138339..138738 | Clytia hemisphaerica | exon |
| TCONS_00054187-exon-scaffold_242-1575043694:138339..138738 | TCONS_00054187-exon-scaffold_242-1575043694:138339..138738 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:136717..138738 + |
Blast
The following BLAST results are available for this feature:
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