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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054151 ID=TCONS_00054151|Name=TCONS_00054151|organism=Clytia hemisphaerica|type=transcript|length=1569bp
CTACCACAAGCTAACAATATATCAGATGCTAATACATCAGTTTCAAATGA
GAATTCTACAACAAGCCTACATTCTAATCCACGTGTTATTGAAGCAgcaa
acatttttgaagaagGTGAATTGAAACACGAgattaaaaaatgcaaaatt
tgtaaTGAAGTGAGGACTGTTTTCCACCAAGCTCCTCAAGTACAGcctat
tttgaataaaaatgatttGTTTCCACCTTTTTCATGGTCAGTAAGGGAAG
ACGGTAAGTGCAACAGGTGCTATCAAGAGGAAAAAAGTAACAGCAAGAGG
AAAAACCCTAGTGCCGCTCCTAAGTTTTCAGGTATTTTCACAAATAATGA
CATTGAAGGTAATAGAGTCCCTCATAACAATATGCACTTTGAAAATATAC
CCCCTTATTTACAAAAGTTGACTCTTCTTGAAACTGCTATGATTTCAAAG
ATTAATACCATAACGAATATAACCATACTAAAATATGGAATGCTAAGAGG
CAAAGGGCATAGCATAGCTGTCCCAAATGACATGAAGATAGNCCTACATT
CTAATCCACGTGTTATTGAAGCAgcaaacatttttgaagaagGTGAATTG
AAACACGAgattaaaaaatgcaaaatttgtaaTGAAGTGAGGACTGTTTT
CCACCAAGCTCCTCAAGTACAGcctattttgaataaaaatgatttGTTTC
CACCTTTTTCATGGTCAGTAAGGGAAGACGGTAAGTGCAACAGGTGCTAT
CAAGAGGAAAAAAGTAACAGCAAGAGGAAAAACCCTAGTGCCGCTCCTAA
GTTTTCAGGTATTTTCACAAATAATGACATTGAAGGTAATAGAGTCCCTC
ATAACAATATGCACTTTGAAAATATACCCCCTTATTTACAAAAGTTGACT
CTTCTTGAAACTGCTATGATTTCAAAGATTAATACCATAACGAATATAAC
CATACTAAAATATGGAATGCTAAGAGGCAAAGGGCATAGCATAGCTGTCC
CAAATGACATGAAGATAGCAAAAACTCTACCAAATCTCCCTCAAGAAGTA
GGCATTATATTGCTAAGAAAGAAAGGTGCGAATGGTGAAGTCTTAAAAGA
ATACACCGTTAGGCGCGATTTTGTTGAAAAGGCATTGACAGGCCTTGTCT
TTGGTTGGCCTAATGGGGGTATAGAAAATGCTTTACCAAATTACAAAATA
TACGATGGGCCAGATCATATGAATACACCTTTGAAAGGACGTTACTTTGA
ATGGGCTCCCAatcctttttattttgatgttattattgaCTTTTCGAGGT
TAAATGAATTGCCTCTAGATGGTAAACAAATATGTCCTGGAGTTCCTAAT
TTAGAGTTTAAAACAGAGATTcctaatttgaataaaaatttgtcTGACGG
TCAGCAAGGATGTTCAGATCTGGAAAATACTCACTCAGGTATTGTGACCC
CCCTTGAACCCAACGACatcaataaaaatatcgaaaaactATTAGAAACA
CTAATTGGTGATGGGGAGACAATTGAAAATGTTGTACGTCTTCGAAGAGT
TGGGGTTGCAGAATTGAGC Run BLAST on NCBI protein sequence of TCONS_00054151-protein >TCONS_00054151-protein ID=TCONS_00054151-protein|Name=TCONS_00054151-protein|organism=Clytia hemisphaerica|type=polypeptide|length=523bp
LPQANNISDANTSVSNENSTTSLHSNPRVIEAANIFEEGELKHEIKKCKI
CNEVRTVFHQAPQVQPILNKNDLFPPFSWSVREDGKCNRCYQEEKSNSKR
KNPSAAPKFSGIFTNNDIEGNRVPHNNMHFENIPPYLQKLTLLETAMISK
INTITNITILKYGMLRGKGHSIAVPNDMKIXLHSNPRVIEAANIFEEGEL
KHEIKKCKICNEVRTVFHQAPQVQPILNKNDLFPPFSWSVREDGKCNRCY
QEEKSNSKRKNPSAAPKFSGIFTNNDIEGNRVPHNNMHFENIPPYLQKLT
LLETAMISKINTITNITILKYGMLRGKGHSIAVPNDMKIAKTLPNLPQEV
GIILLRKKGANGEVLKEYTVRRDFVEKALTGLVFGWPNGGIENALPNYKI
YDGPDHMNTPLKGRYFEWAPNPFYFDVIIDFSRLNELPLDGKQICPGVPN
LEFKTEIPNLNKNLSDGQQGCSDLENTHSGIVTPLEPNDINKNIEKLLET
LIGDGETIENVVRLRRVGVAELS Run BLAST on NCBI transcript from alignment at scaffold_241:12539..14107 Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054151 ID=TCONS_00054151|Name=TCONS_00054151|organism=Clytia hemisphaerica|type=transcript|length=1569bp|location=Sequence derived from alignment at scaffold_241:12539..14107 (Clytia hemisphaerica)
GCTCAATTCTGCAACCCCAACTCTTCGAAGACGTACAACATTTTCAATTG
TCTCCCCATCACCAATTAGTGTTTCTAATagtttttcgatatttttattg
atGTCGTTGGGTTCAAGGGGGGTCACAATACCTGAGTGAGTATTTTCCAG
ATCTGAACATCCTTGCTGACCGTCAgacaaatttttattcaaattaggAA
TCTCTGTTTTAAACTCTAAATTAGGAACTCCAGGACATATTTGTTTACCA
TCTAGAGGCAATTCATTTAACCTCGAAAAGtcaataataacatcaaaata
aaaaggatTGGGAGCCCATTCAAAGTAACGTCCTTTCAAAGGTGTATTCA
TATGATCTGGCCCATCGTATATTTTGTAATTTGGTAAAGCATTTTCTATA
CCCCCATTAGGCCAACCAAAGACAAGGCCTGTCAATGCCTTTTCAACAAA
ATCGCGCCTAACGGTGTATTCTTTTAAGACTTCACCATTCGCACCTTTCT
TTCTTAGCAATATAATGCCTACTTCTTGAGGGAGATTTGGTAGAGTTTTT
GCTATCTTCATGTCATTTGGGACAGCTATGCTATGCCCTTTGCCTCTTAG
CATTCCATATTTTAGTATGGTTATATTCGTTATGGTATTAATCTTTGAAA
TCATAGCAGTTTCAAGAAGAGTCAACTTTTGTAAATAAGGGGGTATATTT
TCAAAGTGCATATTGTTATGAGGGACTCTATTACCTTCAATGTCATTATT
TGTGAAAATACCTGAAAACTTAGGAGCGGCACTAGGGTTTTTCCTCTTGC
TGTTACTTTTTTCCTCTTGATAGCACCTGTTGCACTTACCGTCTTCCCTT
ACTGACCATGAAAAAGGTGGAAACaaatcatttttattcaaaataggCTG
TACTTGAGGAGCTTGGTGGAAAACAGTCCTCACTTCAttacaaattttgc
attttttaatcTCGTGTTTCAATTCACcttcttcaaaaatgtttgcTGCT
TCAATAACACGTGGATTAGAATGTAGGNCTATCTTCATGTCATTTGGGAC
AGCTATGCTATGCCCTTTGCCTCTTAGCATTCCATATTTTAGTATGGTTA
TATTCGTTATGGTATTAATCTTTGAAATCATAGCAGTTTCAAGAAGAGTC
AACTTTTGTAAATAAGGGGGTATATTTTCAAAGTGCATATTGTTATGAGG
GACTCTATTACCTTCAATGTCATTATTTGTGAAAATACCTGAAAACTTAG
GAGCGGCACTAGGGTTTTTCCTCTTGCTGTTACTTTTTTCCTCTTGATAG
CACCTGTTGCACTTACCGTCTTCCCTTACTGACCATGAAAAAGGTGGAAA
CaaatcatttttattcaaaataggCTGTACTTGAGGAGCTTGGTGGAAAA
CAGTCCTCACTTCAttacaaattttgcattttttaatcTCGTGTTTCAAT
TCACcttcttcaaaaatgtttgcTGCTTCAATAACACGTGGATTAGAATG
TAGGCTTGTTGTAGAATTCTCATTTGAAACTGATGTATTAGCATCTGATA
TATTGTTAGCTTGTGGTAG Coding sequence (CDS) from alignment at scaffold_241:12539..14107 >TCONS_00054151 ID=TCONS_00054151|Name=TCONS_00054151|organism=Clytia hemisphaerica|type=CDS|length=1569bp|location=Sequence derived from alignment at scaffold_241:12539..14107 (Clytia hemisphaerica)
GCTCAATTCTGCAACCCCAACTCTTCGAAGACGTACAACATTTTCAATTG
TCTCCCCATCACCAATTAGTGTTTCTAATagtttttcgatatttttattg
atGTCGTTGGGTTCAAGGGGGGTCACAATACCTGAGTGAGTATTTTCCAG
ATCTGAACATCCTTGCTGACCGTCAgacaaatttttattcaaattaggAA
TCTCTGTTTTAAACTCTAAATTAGGAACTCCAGGACATATTTGTTTACCA
TCTAGAGGCAATTCATTTAACCTCGAAAAGtcaataataacatcaaaata
aaaaggatTGGGAGCCCATTCAAAGTAACGTCCTTTCAAAGGTGTATTCA
TATGATCTGGCCCATCGTATATTTTGTAATTTGGTAAAGCATTTTCTATA
CCCCCATTAGGCCAACCAAAGACAAGGCCTGTCAATGCCTTTTCAACAAA
ATCGCGCCTAACGGTGTATTCTTTTAAGACTTCACCATTCGCACCTTTCT
TTCTTAGCAATATAATGCCTACTTCTTGAGGGAGATTTGGTAGAGTTTTT
GCTATCTTCATGTCATTTGGGACAGCTATGCTATGCCCTTTGCCTCTTAG
CATTCCATATTTTAGTATGGTTATATTCGTTATGGTATTAATCTTTGAAA
TCATAGCAGTTTCAAGAAGAGTCAACTTTTGTAAATAAGGGGGTATATTT
TCAAAGTGCATATTGTTATGAGGGACTCTATTACCTTCAATGTCATTATT
TGTGAAAATACCTGAAAACTTAGGAGCGGCACTAGGGTTTTTCCTCTTGC
TGTTACTTTTTTCCTCTTGATAGCACCTGTTGCACTTACCGTCTTCCCTT
ACTGACCATGAAAAAGGTGGAAACaaatcatttttattcaaaataggCTG
TACTTGAGGAGCTTGGTGGAAAACAGTCCTCACTTCAttacaaattttgc
attttttaatcTCGTGTTTCAATTCACcttcttcaaaaatgtttgcTGCT
TCAATAACACGTGGATTAGAATGTAGGNCTATCTTCATGTCATTTGGGAC
AGCTATGCTATGCCCTTTGCCTCTTAGCATTCCATATTTTAGTATGGTTA
TATTCGTTATGGTATTAATCTTTGAAATCATAGCAGTTTCAAGAAGAGTC
AACTTTTGTAAATAAGGGGGTATATTTTCAAAGTGCATATTGTTATGAGG
GACTCTATTACCTTCAATGTCATTATTTGTGAAAATACCTGAAAACTTAG
GAGCGGCACTAGGGTTTTTCCTCTTGCTGTTACTTTTTTCCTCTTGATAG
CACCTGTTGCACTTACCGTCTTCCCTTACTGACCATGAAAAAGGTGGAAA
CaaatcatttttattcaaaataggCTGTACTTGAGGAGCTTGGTGGAAAA
CAGTCCTCACTTCAttacaaattttgcattttttaatcTCGTGTTTCAAT
TCACcttcttcaaaaatgtttgcTGCTTCAATAACACGTGGATTAGAATG
TAGGCTTGTTGTAGAATTCTCATTTGAAACTGATGTATTAGCATCTGATA
TATTGTTAGCTTGTGGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054151-exon-scaffold_241-1491911889:12539..14107 | TCONS_00054151-exon-scaffold_241-1491911889:12539..14107 | Clytia hemisphaerica | exon |
| TCONS_00054151-exon-scaffold_241-1510915933:12539..14107 | TCONS_00054151-exon-scaffold_241-1510915933:12539..14107 | Clytia hemisphaerica | exon |
| TCONS_00054151-exon-scaffold_241-1575043694:12539..14107 | TCONS_00054151-exon-scaffold_241-1575043694:12539..14107 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_241 | supercontig | scaffold_241:12539..14107 . |
Blast
The following BLAST results are available for this feature:
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