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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054114 ID=TCONS_00054114|Name=TCONS_00054114|organism=Clytia hemisphaerica|type=transcript|length=13169bp transcript from alignment at scaffold_24:179499..257124- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054114 ID=TCONS_00054114|Name=TCONS_00054114|organism=Clytia hemisphaerica|type=transcript|length=77626bp|location=Sequence derived from alignment at scaffold_24:179499..257124- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00054114 vs. Swiss-Prot (Human)
Match: PKHL1 (Fibrocystin-L OS=Homo sapiens GN=PKHD1L1 PE=2 SV=2) HSP 1 Score: 1256.89 bits (3251), Expect = 0.000e+0 Identity = 836/2408 (34.72%), Postives = 1251/2408 (51.95%), Query Frame = 2
Query: 215 NIHGIGYKWSKENINILTGDTVEWSWGYSP-ESGVTSGIYPSDPDDILSYDASNFYC--QPSQSGTCSKRFDFDYGFTSGTLKGY--GFSFGGNIVVIERTSNVVED------ILVLVKGYEST-----------------------------------NTLPFTYRDDRTPKITSIEQDQSTGLMHRLPSQRIKINGVGFSSTRSKNNVKFGSHLCDVKSASATSLECDMDLTSEPPMDILLPVSLLVEGKGDALVQIRSDLNYSVVFQHEVSGISPLRGSEQGRTKLTVGGHG--LNGHLVEVIIGVSVCETIESTYSQLTCWSPADASGSADIEVQDKGYQLDAQKTETPFTFVYDSTLTPIAKQETIRGNVMQDVGNTLRIGVEG---GSTTQSYQFHFNDIVIQGTEVVTKEDDVFTYSDAFLLPHGGYSIRLYIEGKGYTQFTHNGKTQDFYPGAITGKISSVTPPLGSKYGGTEITINGYGFRGEGGSYPNRQPGSSDVVIAQSTVTIDGKPCRITSKTMTQIKCITPPSVDEVCPNCMTGPIEVS--VDDQIKSTTKFEYSDDESPEISSVSPTTGKNGDTITLTG-NFPHST-GVSVQVGDAECQSVIVESSTKITCTLQHHTAGNTTLKVHIDGSGDSNS-VPFVCXXXXXXXXXXXXXXXXXIEVEISGTGYG-EDTMVTICDVDCPVKKDEVTVTNIKCLSPAQEGPIDVAITCAIKISSGEQEHILSAQYLYDPSKTSVVTDVSPSRXXXXXXXXXXXXXXXXXXSPVKPEVTIDGIECQVKSVSSNSIICTTQQSNVTSLNADVIIQFENSGRAVVSSQVTFQVVDVWSSKFTWGNNDPPKKGDFVVIEKGQTMLLDQDTEILSFLLIKGGTFIFDRKDIHLQSEFILITENGRFEIGTEDDPFQQEAKITIHGHVRKPELPVYGTKSIALRTGYLGLHGRHIPHTWTRLANTVDAGSTEIELLDPATGWRVNDQIVLASTSK--SIRENEVVKIISISSDKTTLVVEPALRFKHISISQTIT-GRMIETRGEVGLLTRNVRIQGSEHDEWNGTITACPAEFDPDQFATQTCFDGRFGQERESDEFGVQIMIHSDQKDQGLAVAHFNHIEITNAGQAFRLGRYPIHFHMEGDVS-ESYVKGCAIHRSFNRAVTMHHVHNLVVERNVIYDIRGNAYFMEDGIETGNVVRYNLAVFVIPSSSGLNVDITPASYWVTNANNTVSHNAAAGGSHFGFWYQMFEHPDGPSFDVNICPRNVPMLEFQNNTAHSFGRYGLWIFPIYHPMVGGDCNSRVHEPAHFHSLTGWNNMKTAECVECGSVRFVDFISLDSDAAGIE-------YIDASSQNSPWDGATIENSLMVGHSNLRTIGSYELKIGSNTNCTTSGVLLPFSSRLTVKDTTFVNFDEDTCHTLGTCA---HCKPFDGAAIVRTKGLTFNNSPNRVSFPFVHATVIDDLDGSVSGHVGASILPTSGYLDPADCTQKPEYSFGVDGSVC-KTTKFAAISWNEMKPESIDAKDAYLSNQHGQDVVHWRKKSKTGHPEGYTTFLPINQEVTLSFQNSSQFTNISYSMSVIEMPPDKFAYIKTDFKQIPDHFKTVDIEKNNTLTYPEGDLFEHGDWYWKETTKEMTYLVKGAGDESSPERLP-----------INFNVYRCFFLRCTVPEPPT---IPDGRPSDNILYWSKAADWDGTLEGWGGANGEIPKDGESVIIHRNWWMVLDMNKPVKLDRLFVYGALELEPDIE--------HDLSANLIMITGLGGMLIVGWPNNTMSHPVFIRLTGNHDTPDLPINQNLNLGAKALGIFGRAQFYGEANSVHWTRLAASLTKGQTSLTLEDAVEWKVQDEIIVTTTSFEPKQTEEFTISAVSSDGKTLTLSKAAEYDHGV--FHETIGGRDVKMSAKVGLLTRTIRIVGEDSPERSLEDQSFGCRVLVSQYTQSGFSYSGTAKFSEVQFSHCGQYGYTEKYDPRYSLAFLNVGRL-DNTTSFVKGCSFNNGFNTALGVYGTDNLQVEENVFYHGINELVDVEGVDHQLINNLVALSIAEGTYKTEPYQFDLKWPASVMLYHTTNLTFIGNSIAGSEKIGLIYAGTECNDN-NAGNRIYDNEIHSTLHGIHLKKPS-SHCYKSENFLIWKNLDFGIYLWTTQSIXYCYKSENFLIWKNLDFGIYLWTTQSIEIKNVILVDNKISIFGGVWGPNPLSHQFKDNTFTIKESLFVGQSDNFDC--VLDSVIPYHSTFYPGRRSPRAPGGANVGIMTXXXXXXXXXXXXTKPFEDPMSYPAINGRTIIHNVTFASFGAGCGGNLNRIIMTNPKYGDIIHPFDISNAILENVDEKTKVFHHAMTTSWINPSDCVDMDCDARRKILISNEDGSFXGS 7135
++HG+GY WS +N+ GDTV W W P G+ I+ + YD F Q S SG+ F Y FTS + Y G+ + + ++ NV+ + + V E+T L F +P I++I STG ++ L I I G GFS+ N V GS+ C V+ +S S+ C +D + + I V+L V G A+ + ++ + V + + P GS G T +T+ G G ++ V+V++G C+ + Y+ + C + A D+++ G Q TF Y ++TP I G V ++++ +EG G+ + + + EV E+++ LP G +S+ + + KG G P ++S++P GS GGT + I G GF YP +TVTI +PC+I S ++ C TP TG ++V V+ F Y+ +++P + + P+ G G I +TG NF +SV + + +C +V + + + + C + H G + +H G + S V F L+ FGGG + ++GTG+ +++++ +C +C + + T + C P+ G C + + +G+ + Y S T ++T VSP R T GG +T G+GF + +TI +C V+ + IIC T ++ A V + G A + + F VD WSS F+WG PP++G VVI KGQT+LLDQ T IL LLI+GGT IFD DI LQ+E ILIT+ G +IGTE PFQ +A IT+HGH+R PELPVYG K++A+R G L LHG +P TWTRLA+T AG I +L A W+ D IV+AST S ENE + I S+S+D + + L + H+ I+ T+ G + E R EVG+LTRN+ I+GS++ EWN I ACP FD +FATQTC G+FG+E SD+FG +M H+ + ++E+ +AGQAFRLGRYPIH+H+ GD+ +SYV+GCAIH+++NRAVT+H+ H+L+VERN+IYDI+G A+F+EDGIE GN+++YNLAVFV S+S LN D+TPA++WVTN NNT+ HNA AGG+HFGFWY+M HPDGPS+D NIC + VP+ EF NNT HS G +G+WIF Y PM G C S V PA F+SLT WN K AE V G+++F +F+ +++ AGIE Y+ + +GA I+N+ +VGH + EL +GS CT G++LPFS LTV F+NFD C LG + C G + + ++++PN+ F + H V+ D+DGS++GH G +++P S LDP+ CTQ+ E+S G GSVC + F +++N+ P S+ KD LS+ G ++ ++KK T H G+ +P + F+ TNISY+ + + + I +F Q PD F +D+ +N + + ++GDW+ + T + YLV G D + + INF Y C C PP+ IP RP+ L WS + W + E N +P G +VII W+V D++ P ++RL ++G LELE ++ N I+ GG LI GW +N + I L GNH T D + + N GAK LG+FG +G +S++ T+L+ + G L+L DAV+W+ +EI++TTTS++ QTE +I + D K L L+ + Y H +H G ++A VG+L+R I+IVGED P S + SFG RVLV +T++ ++ G A+ S V+F H GQ G+ + DPRY++ FLN+G++ ++ +S+++GC+F++GF+ A+GV+GTD L +++N+ + + E + + G +++ NL+ALS+ GTY+ W A++ + TN N +AG + G G C N + +DNE H L+GI++ + C + F IW D+G IY TT+S+ I NV LVDN ++IF ++ P +SH+ IK SL VG S F+C VL + P + RSPR+P G GI +S P KP MSY AI+G I TF F C G N I +TNP D+ HP + N L + E++K+F H S +NPSDCVDM CDA+RK + + DGSF G+
Sbjct: 1401 SVHGLGYAWSPPVLNVSVGDTVAWHWQTHPFLRGIGYRIFSVSSPGSVIYDGKGFTSGRQKSTSGS------FSYQFTSPGIHYYSSGYVDEAHSIFLQGVINVLPAETRHIPLHLFVGRSEATYAYGGPENLHLGSSVAGCLATEPLCSLNNTRVKNSKRLLFEVSSCFSPSISNITP--STGTVNEL----ITIIGHGFSNLPWANKVTIGSYPCVVEESSEDSITCHIDPQNSMDVGIRETVTLTVYNLGTAINTLSNEFDRRFVLLPNIDLVLPNAGSTTGMTSVTIKGSGFAVSSAGVKVLMGHFPCKVLSVNYTAIECETSPAAQQLVDVDLLIHGVPAQCQGN---CTFSYLESITPY-----ITGVFPNSVIGSVKVLIEGEGLGTVLEDIAVFIGNQQFRAIEV--NENNITALVTP--LPVGHHSVSVVVGSKGLAL----GNLTVSSP-----PVASLSPTSGSIGGGTTLVITGNGF------YP-----------GNTTVTIGDEPCQIISINPNEVYCRTPAGT--------TGMVDVKIFVNTIAYPPLLFTYALEDTPFLRGIIPSRGPPGTEIEITGSNFGFEILEISVMINNIQC-NVTMANDSVVQCIVGDHAGGTFPVMMHHKTKGSAMSTVVFEYPLNIQNINPSQGSFGGGQTMTVTGTGFNPQNSIILVCGSECAIDRLRSDYTTLLCEIPSNNG-TGAEQACEVSVVNGKDLSQSMTPFTYAVSLTPLITAVSPKRGSTAGGTRLTVVGSGFSENMEDVHITIAEAKCDVEYSNKTHIICMTDAHTLSGW-APVCVHIRGVGMAKLDN-ADFLYVDAWSSNFSWGGKSPPEEGSLVVITKGQTILLDQSTPILKMLLIQGGTLIFDEADIELQAENILITDGGVLQIGTETSPFQHKAVITLHGHLRSPELPVYGAKTLAVREGILDLHGVPVPVTWTRLAHTAKAGE-RILILQEAVTWKPGDNIVIASTGHRHSQGENEKMTIASVSADGINITLSNPLNYTHLGITVTLPDGTLFEARAEVGILTRNILIRGSDNVEWNNKIPACPDGFDTGEFATQTCLQGKFGEEIGSDQFGGCVMFHAPVPGANMVTGRIEYVEVFHAGQAFRLGRYPIHWHLLGDLQFKSYVRGCAIHQAYNRAVTIHNTHHLLVERNIIYDIKGGAFFIEDGIEHGNILQYNLAVFVQQSTSLLNDDVTPAAFWVTNPNNTIRHNAVAGGTHFGFWYRMNNHPDGPSYDRNICQKRVPLGEFFNNTVHSQGWFGMWIFEEYFPMQTGSCTSTVPAPAIFNSLTTWNCQKGAEWVNGGALQFHNFVMVNNYEAGIETKRILAPYVGGWGET---NGAVIKNAKIVGHLD-------ELGMGS-AFCTAKGLVLPFSEGLTVSSVHFMNFDRPNCVALGVTSISGVCNDRCGGWSAKFVDVQYSHTPNKAGFRWEHEMVMIDVDGSLTGHKGHTVIPHSSLLDPSHCTQEAEWSIGFPGSVCDASVSFHRLAFNQPSPVSLLEKDVVLSDSFGTSIIPFQKKRLT-HMSGWMALIPNANHINWYFKGVDHITNISYTSTFYGFKEEDYVIISHNFTQNPDMFNIIDM-RNGSSNPLNWNTSKNGDWHLEANTSTLYYLVSGRNDLHQSQLISGNLDPDVKDVVINFQAYCCILQDCFPVHPPSRKPIPKKRPATYNL-WSNDSFWQSSREN----NYTVPHPGANVIIPEGTWIVADIDMP-SMERLIIWGVLELEDKYNVGAAESSYREVVLNATYISLQGGRLIGGWEDNPFKGDLKIVLRGNHTTQDWALPEGPNQGAKVLGVFGELDLHGIPHSIYKTKLSETAFAGSKVLSLMDAVDWQEGEEIVITTTSYDFHQTETRSIVKILHDHKILILNDSLSYTHFAEKYHVPGTGESYTLAADVGILSRNIKIVGEDYPGWS--EDSFGARVLVGSFTENMMTFKGNARISNVEFYHSGQEGFRDSTDPRYAVTFLNLGQIQEHGSSYIRGCAFHHGFSPAIGVFGTDGLDIDDNIIHFTVGEGIRIWGNANRVRGNLIALSVWPGTYQNRKDLSSTLWHAAIEINRGTNTVLQNNVVAGFGRAGYRIDGEPCPGQFNPVEKWFDNEAHGGLYGIYMNQDGLPGCSLIQGFTIWTCWDYG---------------------------IYFQTTESVHIYNVTLVDNGMAIFPMIYMPAAISHKISSKNVQIKSSLIVGSSPGFNCSDVLTNDDP-NIELTAAHRSPRSPSGGRSGI-CWPTFASAHNMAPRKPHAGIMSYNAISGLLDISGSTFVGFKNVCSGETNVIFITNPLNEDLQHPIHVKNIKLVDTTEQSKIFIHRPDISKVNPSDCVDMVCDAKRKSFLRDIDGSFLGN 3695 HSP 2 Score: 95.5153 bits (236), Expect = 7.073e-19 Identity = 107/383 (27.94%), Postives = 160/383 (41.78%), Query Frame = 2
Query: 566 FTYRDDRTPKITSIEQDQSTGLMHRLPSQRIKINGVGFSSTRSKNNVKFGSHLCDVKSASATSLECDMDLTSEPPMDILLPVSLLVEGKGDALVQIRSDLNYSVVFQHEVSGISPLRGSEQGRTKLTVGGHGLNGHLVEVIIGVSVCETIESTYSQLTCWSPADASGSADIEVQDKGYQLDAQKTETPFTFVYDSTLTPI-----AKQETIRGNVMQDV-----GNTLRIGVE---GGSTTQSYQFHFNDIVIQGTEVVTKEDDVFTYSDAFLLPH---GGYSIRLYIEGKGYTQFTHNGKTQDFYPGAI--TGKISSVTPPLGSKYGGTEITINGYGFRGEGGSYPNRQPGSSDVVIAQSTVTIDGKPCRITSKTMTQIKCI 1660
FT+ + TP + +I Q + + + I G GFS + S V G C + S L+C + S PV++ + G L Q + V+Q ++S I P GS G T LT+ G G N + +V++G C IE +++TC +P G+ DI V G+Q A+ F Y+ TPI K TI G V + GN L + GG T Q ++F DI LLP G + I + + G+ T+D +I +++S+ P GS +GGTEITI G+GF + A++TV + PC +TS + IKCI
Sbjct: 1059 FTWDSNITPLVLAISPSQGSYEEGTI----LTIVGSGFSPS-SAVTVSVGPVGCSLLSVDEKELKCQILNGSAGHA----PVAVSMADVG--LAQNVGGEEFYFVYQSQISHIWPDSGSIAGGTLLTLSGFGFNEN-SKVLVGNETCNVIEGDLNRITCRTPKKTEGTVDISVTTNGFQATARD-----AFSYNCLQTPIITDFSPKVRTILGEVNLTIKGYNFGNELTQNMAVYVGGKTCQILHWNFTDI-------------------RCLLPKLSPGKHDIYVEVRNWGF------ASTRDKLNSSIQYVLEVTSMFPQRGSLFGGTEITIRGFGF---------------STIPAENTVLLGSIPCNVTSSSENVIKCI 1384 The following BLAST results are available for this feature:
BLAST of TCONS_00054114 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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