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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054094 ID=TCONS_00054094|Name=TCONS_00054094|organism=Clytia hemisphaerica|type=transcript|length=3434bpRun BLAST on NCBI transcript from alignment at scaffold_24:126665..142860+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054094 ID=TCONS_00054094|Name=TCONS_00054094|organism=Clytia hemisphaerica|type=transcript|length=16196bp|location=Sequence derived from alignment at scaffold_24:126665..142860+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00054094 vs. Swiss-Prot (Human)
Match: FBXW8 (F-box/WD repeat-containing protein 8 OS=Homo sapiens GN=FBXW8 PE=1 SV=2) HSP 1 Score: 117.472 bits (293), Expect = 5.958e-27 Identity = 67/234 (28.63%), Postives = 125/234 (53.42%), Query Frame = 1
Query: 289 AIANKYLNTSIEENKPNSRKRKYSNQDDGNLEACSSKRK-----ESLVDLLIADIDEITCIPFFEMELPKEIAVKVFTYLNVRDLSQCCRASKQWKAIAEDDLIWFNIYKQLKMNGEDLSMIDGYEWKRRVKDAVLKKRHVQQKWKERFCEVYDLEYEKGGILCTTCCYEDDVIVAYLDGSLKIWNLMDRSFGHP-LKERHTRDEDIITDVCCDVKMSKTLCVASFQNGDVMVW 972
A+A + L + P +R + QD + R+ E LVD LI D++E+ +PFF+++LP E+A+ +F YL+ ++L +C + SK WK IAED+++W+ + +Q + + D S+ D WK ++ K+ ++ WK R V +LE+ +LC ++ VI Y G +++W+ + P L+ DE + V+++ +L VA++++G + +W
Sbjct: 54 ALAQRLLEGA--GRPPAARATRAEGQDVASRSRSPLAREGAGGGEQLVDQLIRDLNEMNDVPFFDIQLPYELAINIFQYLDRKELGRCAQVSKTWKVIAEDEVLWYRLCQQ-EGHLPDSSISDYSCWKLIFQECRAKEHMLRTNWKNRKGAVSELEHVPDTVLCDVHSHDGVVIAGYTSGDVRVWDTRTWDYVAPFLESEDEEDEPGMQPNVSFVRINSSLAVAAYEDGFLNIW 284 The following BLAST results are available for this feature:
BLAST of TCONS_00054094 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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