TCONS_00053737 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053737
Unique NameTCONS_00053737
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length219

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053737 ID=TCONS_00053737|Name=TCONS_00053737|organism=Clytia hemisphaerica|type=transcript|length=219bp
GTTTATTATTtattaaacttttgttttttgttttccccTGGGTGTTATCA
TAGTAggcctgattggtgtaattatcGTGCAAATTTGAAACAAAGCACCA
AATTAGGACCATGCAGACATGCCTATAATACCCTGTGGATTGATATTAGA
AGGGCGGCCCAGAAAATTTTAAGGGTAGCCCTTATTTCTGGACCCATTTA
TTGAAAACCTAGGGTAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_233:664558..664776

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053737 ID=TCONS_00053737|Name=TCONS_00053737|organism=Clytia hemisphaerica|type=transcript|length=219bp|location=Sequence derived from alignment at scaffold_233:664558..664776 (Clytia hemisphaerica)
CTTTACCCTAGGTTTTCAATAAATGGGTCCAGAAATAAGGGCTACCCTTA
AAATTTTCTGGGCCGCCCTTCTAATATCAATCCACAGGGTATTATAGGCA
TGTCTGCATGGTCCTAATTTGGTGCTTTGTTTCAAATTTGCACgataatt
acaccaatcaggccTACTATGATAACACCCAggggaaaacaaaaaacaaa
agtttaataAATAATAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033900XLOC_033900Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053737-exon-scaffold_233-1491911889:664558..664776TCONS_00053737-exon-scaffold_233-1491911889:664558..664776Clytia hemisphaericaexon
TCONS_00053737-exon-scaffold_233-1510915933:664558..664776TCONS_00053737-exon-scaffold_233-1510915933:664558..664776Clytia hemisphaericaexon
TCONS_00053737-exon-scaffold_233-1575043694:664558..664776TCONS_00053737-exon-scaffold_233-1575043694:664558..664776Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:664558..664776 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	2.15335	5.04849	0	0	0	0	1.05883	6.55769	0	5.85779	4.65685	1.51945	3.29483	1.12592	0	0	0	0	0	0	0	0	1.34906	1.204	2.89433	1.85155	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053737 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top