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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053735 ID=TCONS_00053735|Name=TCONS_00053735|organism=Clytia hemisphaerica|type=transcript|length=1306bp
atagaaggcgctaaaaacgtgtcaaagggcgcaaaatcgcccaaccaaac
atcaaaaaaaaaatttggcgcccccttgaaaagcttttttggcgcccctc
tcaggtctttctgggtggtgcactgcacaccctgcaccccctgccaggcc
gccactgcaTCTCTTATCAAGTCAAGTATCTGCAGAATTTTATAGAAAAT
GAATGAAAGGTCTCAAACAATGAAAAAGTAGCGACAGACGAATTTTTGTG
CAATAGCATTATAATGATGTATCTGACATGAGAAAAGTGTTTCGTGGGAG
GACTTATGGCGAGGTTTCCAGAGCAACTAACAAAAAGAGAAACTAATTGC
TCTGCTAGTAGCACAAATATttccaatccccgaaaacgagggctgggtta
cgcGGTCTCACAAAATAcagtaatctaaaccttccagatgtccttccaga
gctttagcgtgtcgaatgaaaatcttttttgcccACCCTATATTTAGGAG
TTTTGTGTGCTGATAAAGGAACATATTTCTTCGTTTTGCTTTATGTACCA
GATGATTGTAtcaatacatgtttttataaagCAAATttgtctctctctct
cttttttcatgtttcagCATTTCACAAATTTGCTGAATTCTTTGATTCCC
TCGGTGAAAAGTCGAAAACTGTCGTCTGTATTATCAAAGAGAGCAATTTC
TATTTCATATAATGTTCCCTTGCGAGACGTAACTGAATTCACAAATTGTA
TCGATATCAAATCGATCTCCTCTGGATTGATTAGACGGTTTTTCAGTCTA
TTTACACCAAGACTTTTTGGATATTCGCAAGCGGTACTTGAACTTTTCCT
TGAAGTTGTCGAAATGGAGTTTCGACGTGATTTGCttgcattaattgctt
ttaGTTTTTTGACCAtcaatttttgattgatttttatggAAGCTGTCTTG
AAAGCTTCTCGTATAATGTTGCTCAAAGTTTCCTTTGTGTTATTGTCCTG
TGGGACACGAATTTTGTTGACGCGAATGTCCATTTCTTTCCAGTAGAACA
ATGCGTCGATTCTTTTGCATTGTTTATTTGTGTGTTTATCCAACATTTTT
CCTTATCCTGAGCGAGTACTCTCGCCGAACCCCTTACTCAAATCAAATTC
TGCTTCTTTCTAGTTACAATTGATACTGTATAACTGCGTCCGTACagtta
aaataagaaaaattcaaccTTATTTTTCTATTCCATCATCTTGTTTAAAT
CCCCTCCCTAGCTCATTTGTAtcttaaagaaatttcaacacTGCACAtcg
tgtttt Run BLAST on NCBI protein sequence of TCONS_00053735-protein >TCONS_00053735-protein ID=TCONS_00053735-protein|Name=TCONS_00053735-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
MLDKHTNKQCKRIDALFYWKEMDIRVNKIRVPQDNNTKETLSNIIREAFK
TASIKINQKLMVKKLKAINASKSRRNSISTTSRKSSSTACEYPKSLGVNR
LKNRLINPEEIDLISIQFVNSVTSRKGTLYEIEIALFDNTDDSFRLFTEG
IKEFSKFVKC Run BLAST on NCBI transcript from alignment at scaffold_233:639807..641112 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053735 ID=TCONS_00053735|Name=TCONS_00053735|organism=Clytia hemisphaerica|type=transcript|length=1306bp|location=Sequence derived from alignment at scaffold_233:639807..641112 (Clytia hemisphaerica)
aaaacacgaTGTGCAgtgttgaaatttctttaagaTACAAATGAGCTAGG
GAGGGGATTTAAACAAGATGATGGAATAGAAAAATAAggttgaatttttc
ttattttaactGTACGGACGCAGTTATACAGTATCAATTGTAACTAGAAA
GAAGCAGAATTTGATTTGAGTAAGGGGTTCGGCGAGAGTACTCGCTCAGG
ATAAGGAAAAATGTTGGATAAACACACAAATAAACAATGCAAAAGAATCG
ACGCATTGTTCTACTGGAAAGAAATGGACATTCGCGTCAACAAAATTCGT
GTCCCACAGGACAATAACACAAAGGAAACTTTGAGCAACATTATACGAGA
AGCTTTCAAGACAGCTTccataaaaatcaatcaaaaattgaTGGTCAAAA
AACtaaaagcaattaatgcaaGCAAATCACGTCGAAACTCCATTTCGACA
ACTTCAAGGAAAAGTTCAAGTACCGCTTGCGAATATCCAAAAAGTCTTGG
TGTAAATAGACTGAAAAACCGTCTAATCAATCCAGAGGAGATCGATTTGA
TATCGATACAATTTGTGAATTCAGTTACGTCTCGCAAGGGAACATTATAT
GAAATAGAAATTGCTCTCTTTGATAATACAGACGACAGTTTTCGACTTTT
CACCGAGGGAATCAAAGAATTCAGCAAATTTGTGAAATGctgaaacatga
aaaaagagagagagagacaaATTTGctttataaaaacatgtattgaTACA
ATCATCTGGTACATAAAGCAAAACGAAGAAATATGTTCCTTTATCAGCAC
ACAAAACTCCTAAATATAGGGTgggcaaaaaagattttcattcgacacgc
taaagctctggaaggacatctggaaggtttagattactgTATTTTGTGAG
ACCgcgtaacccagccctcgttttcggggattggaaATATTTGTGCTACT
AGCAGAGCAATTAGTTTCTCTTTTTGTTAGTTGCTCTGGAAACCTCGCCA
TAAGTCCTCCCACGAAACACTTTTCTCATGTCAGATACATCATTATAATG
CTATTGCACAAAAATTCGTCTGTCGCTACTTTTTCATTGTTTGAGACCTT
TCATTCATTTTCTATAAAATTCTGCAGATACTTGACTTGATAAGAGAtgc
agtggcggcctggcagggggtgcagggtgtgcagtgcaccacccagaaag
acctgagaggggcgccaaaaaagcttttcaagggggcgccaaattttttt
tttgatgtttggttgggcgattttgcgccctttgacacgtttttagcgcc
ttctat Coding sequence (CDS) from alignment at scaffold_233:639807..641112 >TCONS_00053735 ID=TCONS_00053735|Name=TCONS_00053735|organism=Clytia hemisphaerica|type=CDS|length=483bp|location=Sequence derived from alignment at scaffold_233:639807..641112 (Clytia hemisphaerica)
ATGTTGGATAAACACACAAATAAACAATGCAAAAGAATCGACGCATTGTT
CTACTGGAAAGAAATGGACATTCGCGTCAACAAAATTCGTGTCCCACAGG
ACAATAACACAAAGGAAACTTTGAGCAACATTATACGAGAAGCTTTCAAG
ACAGCTTccataaaaatcaatcaaaaattgaTGGTCAAAAAACtaaaagc
aattaatgcaaGCAAATCACGTCGAAACTCCATTTCGACAACTTCAAGGA
AAAGTTCAAGTACCGCTTGCGAATATCCAAAAAGTCTTGGTGTAAATAGA
CTGAAAAACCGTCTAATCAATCCAGAGGAGATCGATTTGATATCGATACA
ATTTGTGAATTCAGTTACGTCTCGCAAGGGAACATTATATGAAATAGAAA
TTGCTCTCTTTGATAATACAGACGACAGTTTTCGACTTTTCACCGAGGGA
ATCAAAGAATTCAGCAAATTTGTGAAATGctga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053735-exon-scaffold_233-1491911889:639807..641112 | TCONS_00053735-exon-scaffold_233-1491911889:639807..641112 | Clytia hemisphaerica | exon |
| TCONS_00053735-exon-scaffold_233-1510915933:639807..641112 | TCONS_00053735-exon-scaffold_233-1510915933:639807..641112 | Clytia hemisphaerica | exon |
| TCONS_00053735-exon-scaffold_233-1575043694:639807..641112 | TCONS_00053735-exon-scaffold_233-1575043694:639807..641112 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:639807..641112 . |
Blast
The following BLAST results are available for this feature:
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