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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053731 ID=TCONS_00053731|Name=TCONS_00053731|organism=Clytia hemisphaerica|type=transcript|length=1207bp
TGGAAATGTAACTTAGCCAACCCTGAAAGACATGATAtgattattcatga
tatgcaccactgcaacgacttcatgaaattatgcaacttttctctttttg
ttccacccaatacgtcactttttctattgtttacgtgacatattgggtgg
aaaatttgaaaagttctcagaagactctcctccagtggtgcatatcatga
attatatacttttgataaaaacaaacttgTGAGCAATAAACAGACTTACC
ATCTTTCTCGGAGCAAAAACAGAGCCTTCATCGCGTTTCTAGCATTATTa
tctttaaaatatattgaaattgaaaaaagcaaGATCTGTACGACAactca
taaaaaatcattttgtacataaaaaatcttcattcaGCAGCAGGGGGTGT
GTTTTTGAACACCAGTGAGTCCGATGAggagtcttctttttcaaaataaa
tctcaAGCAGCTTTTTACTCTATAATAATCCATACCATTGTGAACAAAAG
ATCTTTTACGAGACAAATCAAGCTTGTCAACTGAATCTTTAATTTTGCCA
ATAGTCTCATACCGATGCCTGATTTTCAGCTCTTTCGtttcttgattttc
aaaatgaacaaaaactctttgaatgtaatttaactttGTGCTTGGAACAA
AAGGCATTAACAATGGCAATATCATCATCACCAACCAAACAACTGGCCAT
GTTAAGAAAAACAAAGATATCAATATTTTTCGTTGTAGCATTTTGTTTCC
TCATCAAAAAACAAGGATGCCAATGATTTTTTCCAATAAAACAGACTTTG
ATCCTTCAAATAATCGTTCTTGAAAAACAGAACAGGAGGGAAAACACCAA
AATGAGCACGTAACTTCATGCTCAACTCATCAAGAGTTGGGATATCAGAA
ACAGAATACTTCTCAACAAGGGTGCTTTTGTTGTGGTAATACACTGTGAC
GGTTTTCAAAGCTTTGATACCCTTGCTCAAATATAATTCATTCATCAAAT
TCTCCGACAGTCCCTTCACTGCTATATATATGCCAACATTTTTAAGGATA
ATTCTTTTACtataaaaatattcttgatCCGTGATATCAAAGATATTAGC
AATCTTTGTATCCATACTTCTAAGTTCCTGACCATGAGCTATGAGAACAA
AATGAGGTGCGGGAATTCCAAGTTCTTTGGCGATACACAAAAACAAATCT
TCAACAG Run BLAST on NCBI protein sequence of TCONS_00053731-protein >TCONS_00053731-protein ID=TCONS_00053731-protein|Name=TCONS_00053731-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
VEDLFLCIAKELGIPAPHFVLIAHGQELRSMDTKIANIFDITDQEYFYSK
RIILKNVGIYIAVKGLSENLMNELYLSKGIKALKTVTVYYHNKSTLVEKY
SVSDIPTLDELSMKLRAHFGVFPPVLFFKNDYLKDQSLFYWKKSLASLFF
DEETKCYNEKY Run BLAST on NCBI transcript from alignment at scaffold_233:556410..557616 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053731 ID=TCONS_00053731|Name=TCONS_00053731|organism=Clytia hemisphaerica|type=transcript|length=1207bp|location=Sequence derived from alignment at scaffold_233:556410..557616 (Clytia hemisphaerica)
CTGTTGAAGATTTGTTTTTGTGTATCGCCAAAGAACTTGGAATTCCCGCA
CCTCATTTTGTTCTCATAGCTCATGGTCAGGAACTTAGAAGTATGGATAC
AAAGATTGCTAATATCTTTGATATCACGGatcaagaatatttttataGTA
AAAGAATTATCCTTAAAAATGTTGGCATATATATAGCAGTGAAGGGACTG
TCGGAGAATTTGATGAATGAATTATATTTGAGCAAGGGTATCAAAGCTTT
GAAAACCGTCACAGTGTATTACCACAACAAAAGCACCCTTGTTGAGAAGT
ATTCTGTTTCTGATATCCCAACTCTTGATGAGTTGAGCATGAAGTTACGT
GCTCATTTTGGTGTTTTCCCTCCTGTTCTGTTTTTCAAGAACGATTATTT
GAAGGATCAAAGTCTGTTTTATTGGAAAAAATCATTGGCATCCTTGTTTT
TTGATGAGGAAACAAAATGCTACAACGAAAAATATTGATATCTTTGTTTT
TCTTAACATGGCCAGTTGTTTGGTTGGTGATGATGATATTGCCATTGTTA
ATGCCTTTTGTTCCAAGCACaaagttaaattacattcaaagagtttttgt
tcattttgaaaatcaagaaaCGAAAGAGCTGAAAATCAGGCATCGGTATG
AGACTATTGGCAAAATTAAAGATTCAGTTGACAAGCTTGATTTGTCTCGT
AAAAGATCTTTTGTTCACAATGGTATGGATTATTATAGAGTAAAAAGCTG
CTtgagatttattttgaaaaagaagactccTCATCGGACTCACTGGTGTT
CAAAAACACACCCCCTGCTGCtgaatgaagattttttatgtacaaaatga
ttttttatgagtTGTCGTACAGATCttgcttttttcaatttcaatatatt
ttaaagatAATAATGCTAGAAACGCGATGAAGGCTCTGTTTTTGCTCCGA
GAAAGATGGTAAGTCTGTTTATTGCTCAcaagtttgtttttatcaaaagt
atataattcatgatatgcaccactggaggagagtcttctgagaacttttc
aaattttccacccaatatgtcacgtaaacaatagaaaaagtgacgtattg
ggtggaacaaaaagagaaaagttgcataatttcatgaagtcgttgcagtg
gtgcatatcatgaataatcaTATCATGTCTTTCAGGGTTGGCTAAGTTAC
ATTTCCA Coding sequence (CDS) from alignment at scaffold_233:556410..557616 >TCONS_00053731 ID=TCONS_00053731|Name=TCONS_00053731|organism=Clytia hemisphaerica|type=CDS|length=486bp|location=Sequence derived from alignment at scaffold_233:556410..557616 (Clytia hemisphaerica)
GTTGAAGATTTGTTTTTGTGTATCGCCAAAGAACTTGGAATTCCCGCACC
TCATTTTGTTCTCATAGCTCATGGTCAGGAACTTAGAAGTATGGATACAA
AGATTGCTAATATCTTTGATATCACGGatcaagaatatttttataGTAAA
AGAATTATCCTTAAAAATGTTGGCATATATATAGCAGTGAAGGGACTGTC
GGAGAATTTGATGAATGAATTATATTTGAGCAAGGGTATCAAAGCTTTGA
AAACCGTCACAGTGTATTACCACAACAAAAGCACCCTTGTTGAGAAGTAT
TCTGTTTCTGATATCCCAACTCTTGATGAGTTGAGCATGAAGTTACGTGC
TCATTTTGGTGTTTTCCCTCCTGTTCTGTTTTTCAAGAACGATTATTTGA
AGGATCAAAGTCTGTTTTATTGGAAAAAATCATTGGCATCCTTGTTTTTT
GATGAGGAAACAAAATGCTACAACGAAAAATATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053731-exon-scaffold_233-1491911889:556410..557616 | TCONS_00053731-exon-scaffold_233-1491911889:556410..557616 | Clytia hemisphaerica | exon |
| TCONS_00053731-exon-scaffold_233-1510915933:556410..557616 | TCONS_00053731-exon-scaffold_233-1510915933:556410..557616 | Clytia hemisphaerica | exon |
| TCONS_00053731-exon-scaffold_233-1575043694:556410..557616 | TCONS_00053731-exon-scaffold_233-1575043694:556410..557616 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:556410..557616 . |
Blast
The following BLAST results are available for this feature:
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