TCONS_00053715 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053715
Unique NameTCONS_00053715
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length456

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053715 ID=TCONS_00053715|Name=TCONS_00053715|organism=Clytia hemisphaerica|type=transcript|length=456bp
TTACGATTCTCCATCAAACCTGACATATCTTCATACCACAATTTGTAATT
TTCACCGATAAAATCTCCTCTCCCTGTATTGTGATTCGACAAAAACTTTT
CTGCTCCTTTGAAAAACCGCTCAGGTATTTTGCCCAAAGGCTTCTGGACT
TTTTCTTGCACAGCTTTTTGAGCACCTTCAGTTTCTTGTTTTTGATTAAC
TTCTGTTTTCAAATGTTCAAAATCATTTCTCAGGGCTTGCAATTCATTTT
CCAGCTTGCCTTTTTGAGTTTGGGTTTGATCTTTCAACTCAACTTTCAAG
CcttctattccatttttaagggCTTGAACTTCCTTTTctaatttaccatt
ttgagCTTCCAAGCCGCCCATCTCATTTTCAAGGGTTTGAAAGTCATTTT
CCAATTTGCCATTTTGGGCTTTCAAGCCGCCCATTTCCTGTTTAAGGTCT
TCGAAT
Run BLAST on NCBI

protein sequence of TCONS_00053715-protein

>TCONS_00053715-protein ID=TCONS_00053715-protein|Name=TCONS_00053715-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
FEDLKQEMGGLKAQNGKLENDFQTLENEMGGLEAQNGKLEKEVQALKNGI
EGLKVELKDQTQTQKGKLENELQALRNDFEHLKTEVNQKQETEGAQKAVQ
EKVQKPLGKIPERFFKGAEKFLSNHNTGRGDFIGENYKLWYEDMSGLMEN
R
Run BLAST on NCBI

transcript from alignment at scaffold_233:85647..86102

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053715 ID=TCONS_00053715|Name=TCONS_00053715|organism=Clytia hemisphaerica|type=transcript|length=456bp|location=Sequence derived from alignment at scaffold_233:85647..86102 (Clytia hemisphaerica)
ATTCGAAGACCTTAAACAGGAAATGGGCGGCTTGAAAGCCCAAAATGGCA
AATTGGAAAATGACTTTCAAACCCTTGAAAATGAGATGGGCGGCTTGGAA
GctcaaaatggtaaattagAAAAGGAAGTTCAAGcccttaaaaatggaat
agaagGCTTGAAAGTTGAGTTGAAAGATCAAACCCAAACTCAAAAAGGCA
AGCTGGAAAATGAATTGCAAGCCCTGAGAAATGATTTTGAACATTTGAAA
ACAGAAGTTAATCAAAAACAAGAAACTGAAGGTGCTCAAAAAGCTGTGCA
AGAAAAAGTCCAGAAGCCTTTGGGCAAAATACCTGAGCGGTTTTTCAAAG
GAGCAGAAAAGTTTTTGTCGAATCACAATACAGGGAGAGGAGATTTTATC
GGTGAAAATTACAAATTGTGGTATGAAGATATGTCAGGTTTGATGGAGAA
TCGTAA

Coding sequence (CDS) from alignment at scaffold_233:85647..86102

>TCONS_00053715 ID=TCONS_00053715|Name=TCONS_00053715|organism=Clytia hemisphaerica|type=CDS|length=453bp|location=Sequence derived from alignment at scaffold_233:85647..86102 (Clytia hemisphaerica)
TTCGAAGACCTTAAACAGGAAATGGGCGGCTTGAAAGCCCAAAATGGCAA
ATTGGAAAATGACTTTCAAACCCTTGAAAATGAGATGGGCGGCTTGGAAG
ctcaaaatggtaaattagAAAAGGAAGTTCAAGcccttaaaaatggaata
gaagGCTTGAAAGTTGAGTTGAAAGATCAAACCCAAACTCAAAAAGGCAA
GCTGGAAAATGAATTGCAAGCCCTGAGAAATGATTTTGAACATTTGAAAA
CAGAAGTTAATCAAAAACAAGAAACTGAAGGTGCTCAAAAAGCTGTGCAA
GAAAAAGTCCAGAAGCCTTTGGGCAAAATACCTGAGCGGTTTTTCAAAGG
AGCAGAAAAGTTTTTGTCGAATCACAATACAGGGAGAGGAGATTTTATCG
GTGAAAATTACAAATTGTGGTATGAAGATATGTCAGGTTTGATGGAGAAT
CGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033878XLOC_033878Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053715-proteinTCONS_00053715-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053715-exon-scaffold_233-1491911889:85647..86102TCONS_00053715-exon-scaffold_233-1491911889:85647..86102Clytia hemisphaericaexon
TCONS_00053715-exon-scaffold_233-1510915933:85647..86102TCONS_00053715-exon-scaffold_233-1510915933:85647..86102Clytia hemisphaericaexon
TCONS_00053715-exon-scaffold_233-1575043694:85647..86102TCONS_00053715-exon-scaffold_233-1575043694:85647..86102Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:85647..86102 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.16263	0	0	0	0.251559	0.946805	0.303993	0.245624	0.145521	0	1.15779	1.48192	0.838891	1.16758	0.227939	0.376555	2.66911	0.855933	0.546509	0	0.422323	0	0.90846	0.431752	0	0.242592	0.624039	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053715 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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