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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053694 ID=TCONS_00053694|Name=TCONS_00053694|organism=Clytia hemisphaerica|type=transcript|length=3361bpRun BLAST on NCBI protein sequence of TCONS_00053694-protein >TCONS_00053694-protein ID=TCONS_00053694-protein|Name=TCONS_00053694-protein|organism=Clytia hemisphaerica|type=polypeptide|length=839bp MILIQLANRIYEHFTQLVSRLWENRRNPKLTIPIVIALLSISYSTGILEVRun BLAST on NCBI transcript from alignment at scaffold_233:1037770..1080426- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053694 ID=TCONS_00053694|Name=TCONS_00053694|organism=Clytia hemisphaerica|type=transcript|length=42657bp|location=Sequence derived from alignment at scaffold_233:1037770..1080426- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_233:1037770..1080426- >TCONS_00053694 ID=TCONS_00053694|Name=TCONS_00053694|organism=Clytia hemisphaerica|type=CDS|length=37800bp|location=Sequence derived from alignment at scaffold_233:1037770..1080426- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053694 vs. Swiss-Prot (Human)
Match: SNX25 (Sorting nexin-25 OS=Homo sapiens GN=SNX25 PE=1 SV=2) HSP 1 Score: 347.051 bits (889), Expect = 4.032e-141 Identity = 229/683 (33.53%), Postives = 369/683 (54.03%), Query Frame = 2
Query: 374 LDKTLQSVIDFIVRDFCLSWFRDIGKDETAFVEIINKEIWIVIENLLHRLNDVDKMNLLCNDMIQLLYDHFHVLRLSNATLFPGQTSPFLLHPCLKDKTSEIKYLRTCAEALLFTLLPESDSNCXXXXXXXXXXXXGSIFLATAESICDPDYINQTLVLYLEDREKITETRKQKYAYAETYEEFIKMINTATDIETLKQIRYHTIAEIMQATVIHNTKDQQTQDGXXXXXXXXXXXALRERNLKRYINQCRVSKLQCEKRIRMLGGMDYRRYGLGHGQPLGETGEGQKKPLKRSKSSKVLAFGDILDNSLARSYFMMFLERTNNKNLLSFWIGVEKLRMMDPVDLVSNALDIFQEYVTPSAIHVIKFDTHLVRGMEEFIYGKNDEPKCFYDAQQIVYNIMESKFYADFVVSHDYTQFVCQSE----SAMDEIRAHLTQEDEDQLPSFDWSDGFNFKERRNAEILKAAMPTEIEERNEYAAHSLQSLDKNISNKLQALELIKRS-SASVXXXXXXXXXXXXXNTERRQLEFHIERTDLWCEMLGHWKALISTSQYHPDNGQ--PVFLICVSCDEGAEATRTDHQGSAATGWIVARQLDDFKTLHDKLKQCCSWMSK-ELPVSSKKWYKKHESENLESLKGSLQEYLTIVLNDEDLCRSDEVYTFLIPSPDHLREQNVKQENQSM 2398
+DK L+ V D+ RD+ LSW+ ++ +DE ++ ++ W + L HRL+ VD + ++CND+++ L HF L+ +NA Q PF+LH CL++ E+++L+TC+ L+F LLP D R ++ EI+ + E + +PDYINQ L+ L RE++ E K+ Y YA +YE+FIK+IN+ +D+E LKQ+RY + EI+QAT I + + G + + LR RN+KRYINQ V+K QCEKRIR+LGG Y + Q G EG+ +S K+L F DIL N+ R +F M++ER + + L+SFW VE L+ + ++ +I+Q + S I + L + +++ + G N + FY Q+ VY ++ ++Y F+VS Y + + + E S M + + DE + D DG N +I E+ +A + L+ L++ + K QAL I+ + + +L+ E+ + ER L+ H+ RTD WCE LG WKA I++ + +NG+ P + + VS E G W V R+L +F+ LH KL +C + K +LP SK +K + + +E K L ++L +L+DE LC+S+ +Y FL PSPD+L+ +V+ + S
Sbjct: 1 MDKALKEVFDYSYRDYILSWYGNLSRDEGQLYHLLLEDFWEIARQLHHRLSHVDVVKVVCNDVVRTLLTHFCDLKAANAR-HEEQPRPFVLHACLRNSDDEVRFLQTCSRVLVFCLLPSKDVQSLSLRIMLAEILTTKVLKPVVELLSNPDYINQMLLAQLAYREQMNEHHKRAYTYAPSYEDFIKLINSNSDVEFLKQLRYQIVVEIIQATTISSFPQLKRHKGKETAAMKADL--LRARNMKRYINQLTVAKKQCEKRIRILGGPAYDQ------QEDGALDEGEG-----PQSQKILQFEDILANTFYREHFGMYMERMDKRALISFWESVEHLKNANKNEIPQLVGEIYQNFFVESK--EISVEKSLYKEIQQCLVG-NKGIEVFYKIQEDVYETLKDRYYPSFIVSDLYEKLLIKEEEKHASQMISNKDEMGPRDEAGEEAVD--DGTN----------------QINEQASFAVNKLRELNEKLEYKRQALNSIQNAPKPDKKIVSKLKDEIILIEKERTDLQLHMARTDWWCENLGMWKASITSGEVTEENGEQLPCYFVMVSLQEVG--------GVETKNWTVPRRLSEFQNLHRKLSECVPSLKKVQLPSLSKLPFKSIDQKFMEKSKNQLNKFLQNLLSDERLCQSEALYAFLSPSPDYLKVIDVQGKKNSF 640 HSP 2 Score: 175.637 bits (444), Expect = 4.032e-141 Identity = 85/163 (52.15%), Postives = 125/163 (76.69%), Query Frame = 3
Query: 2499 LTKYTQD---RKDSIAEPMYRLIGEIFELKGVFKILRKTLITFVQITFGGTINRHLREFVSWLTSEPMLIYYIDNFKHSMWPRGKLAPYPPSRTDLEKLRTREQAKEKVMKNIPDVLQNLVGKKNSRLGFMKIFDGIQDIRTNKHLFYIFLELLIITICPEVR 2978
L+ Y D RKD++AEP + LIGEIFEL+G+FK +R+TLI VQ+TFG TIN+ +R+ VSW+ SE ML+YYI+ F+ + WP GKLAP R+ + T+++A++K+++NIPD+LQ+LVG++N+R G +KIF+ +Q+ R NKHL Y +ELL+I +CPE+R
Sbjct: 667 LSDYGDDVDGRKDALAEPCFMLIGEIFELRGMFKWVRRTLIALVQVTFGRTINKQIRDTVSWIFSEQMLVYYINIFRDAFWPNGKLAPPTTIRSKEQSQETKQRAQQKLLENIPDMLQSLVGQQNARHGIIKIFNALQETRANKHLLYALMELLLIELCPELR 829 The following BLAST results are available for this feature:
BLAST of TCONS_00053694 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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