TCONS_00053588 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053588
Unique NameTCONS_00053588
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1012

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053588 ID=TCONS_00053588|Name=TCONS_00053588|organism=Clytia hemisphaerica|type=transcript|length=1012bp
ACCATCAGTGGAGAAAGTGGAAGGACCTTATCCATTCATGGCGCAACGAG
ATGATGGTACTGAATGTCCAGTCGTCCAAGATTTCACCTACGGAAAATAT
TTGGGTAATTTGAAGTTGACTTTCGATGAAAATGGTAAATTGTTATCAGC
TCAAGGAAATCCCATCATGTTGAATGTTTCTTATGCTGAAGATGAGGAAG
TTTTAAAAATGGTGGATGAAATGGACGACCCTATCATCAAAGCAAGAATG
GATCCCATTGGTCGTTCATATGTCCGTTTAGAAGGCGATCGCTCCATTTG
TCGTTTGAAGGAGTGCAACCTGGGAAATTTCTTCGCAGATGCTTTGGTTG
ACGCCCAAGTGAAAAATCCTTCCACAGAACAATGGGCTGAAACTGTTCTC
GCTATTTGGAATGGTGGTGGTATCAGATCTGGAAATATTGATAGGAGTTT
TGATGCGGATATAAGCCGTGAGGAACTAAACACGATTAGTCCTTTTGGAA
ATACAGCAGATGTCATGGAAATCAAAGGCAAATATCTACTTCAAGCATTT
GAACATGGATTCTCGGGTATCGACACCAAAGAAGGGCGGTTCCCACAAGT
ATCAGgATTTCGTATACTGTACGATAAGACGAAGCCAGTTGGAAGACGCT
TGGTTAGAGCTTTAGCTTTATGTAACAAATGTCGTGTTCCCAAATACgaa
gaaatcaaagaagaaCAAATTTACAAGTTGGTGACATCGAGCTACCTGGC
GGACGGAGGGGACGGTTACACCATGCTGAAGAAGAACGAAGGCCTCGTCA
AAGGTGAAGATGCTTTAAACGCCCTCGACGCCTACTTTTAGCAAGATGTC
GCCTGTCACCGCTAAAATTGAAGGGCGGGTCATCGATATATCTACTGGTG
ATTTGTATAGACATTCTTCGTCAAGTGCGTTGCGTTCAGGATCGATCAAT
GGCATGGTATTCTTTCTTTGTTTGGTGTTTTGTCTGTTAAGATtataaca
gattttttgaat
Run BLAST on NCBI

transcript from alignment at scaffold_233:887523..890108+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053588 ID=TCONS_00053588|Name=TCONS_00053588|organism=Clytia hemisphaerica|type=transcript|length=2586bp|location=Sequence derived from alignment at scaffold_233:887523..890108+ (Clytia hemisphaerica)
ACCATCAGTGGAGAAAGTGGAAGGACCTTATCCATTCATGGCGCAACGAG
ATGATGGTACTGAATGTCCAGTCGTCCAAGATTTCACCTACGGAAAATAT
TTGGGTAATTTGAAGTTGACTTTCGATGAAAATGGTAAATTGTTATCAGC
TCAAGGAAATCCCATCATGTTGAATGTTTCTTATGCTGAAGATGAGGAAG
TTTTAAAAATGGTGGATGAAATGGACGACCCTATCATCAAAGCAAGAATG
GTAATTGTTTTAAGATAAGCTTTAGAAACGCAAAGAACAGGCTTTTAGAA
TCTgccaacttaaaaaaaaaatcctcaaaTCTAGATTCATATTTAAAGTT
TCCTTGTGAttatgaaactaattttctttatttattatcaaaataaaacc
aaataCACCCTCGTCCACGCCTTACAGGTTAAGGAGATTCATACCCCTTA
ATACATCTTTTTTTATTAAGGATCCCATTGGTCGTTCATATGTCCGTTTA
GAAGGCGATCGCTCCATTTGTCGTTTGAAGGAGTGCAACCTGGGAAATTT
CTTCGCAGATGCTTTGGTTGACGCCCAAGTGAAAAATCCTTCCACAGAAC
AATGGGCTGAAACTGTTCTCGCTATTTGGAATGGTGGTGGTATCAGATCT
GGAAATATTGATAGGAGTTTTGATGGTATGGATAACTTCTTGATGATTTG
ATGCTCGATTTTTGACTTAACTTTCATTTAACTTCTTTATTCCTTGTATG
TAAGATGAAACCACTCGTTTTGAAATTAgggaaaattttaataatttttg
agaattctaaatttcaaattttggtatTTATTCTGTACTTAAACTTTACG
TAATCAAAAAGAAACGAGAAGGATTTGAGCTTACCTTGCTTTTATTTCAT
CATTTAAGCGGATATAAGCCGTGAGGAACTAAACACGATTAGTCCTTTTG
GAAATACAGCAGATGTCATGGAAATCAAAGGCAAATATCTACTTCAAGCA
TTTGAACATGGATTCTCGGGTATCGACACCAAAGAAGGGCGGTTCCCACA
AGTATCAGGTTTGTTTTCTACACCCTCTTGTGTCAAATTTTCAGATCGTA
CttcgtttgaatttttttttgtaagggccGAAATGGCCTGCCTAAATGGT
GAATATCATAGAGTCTTGCaccttttaattttcaaaaattaacttgtttg
ttcttttttttaggATTTCGTATACTGTACGATAAGACGAAGCCAGTTGG
AAGACGCTTGGTTAGAGCTTTAGCTTTATGTAACAAATGTCGTGTTCCCA
AATACgaagaaatcaaagaagaaCAAATTTACAAGGTGTGTATTTGCATA
ACCTAAATGGtttctaataaaagaaatttaGATCATTTGAGAAACTTTGA
TCTACGCAAAACGAATTTAAATGTGTGTGGTTTCTAACAATATTCTAGCA
AAAGTAATTGGTTTCGAATATAGAAGTCCTAAAATATAACTTATGAATTa
taattagaaatatttcgTATTTTGATCTAGATTCGAGTATCTACTGTAAA
CGATTTGTGTTCAAATATGAATTTTAGTCGGTAAAAAACATAAGTCAAAT
TTTCCACATCAAAACACTATGTTCCTCTCATAAGTTACCCTGGGAATCCA
atctcataatcttagaaaaaacaaaaaataactcgcctgcagggagattt
ttccctgcaatgcagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNcgcgaaagtactgctaagtaatac
gccgaaagctggccaatcaggccgaacctgcattgcagggaaaaatctcc
ctgcaggcgagttacctgcgccaagcctTAAACAAGCtctaaaaatatca
taaactagactgtgaaaaaagtttaacactTGGATTTCCAGGCTANataa
tttatggaaaaagctgactctgcagaaaaaaggaaaacaaatgaaaatga
aaacatagattcatttagaaacaaaatggctgttggctcaTCTTGGTTCA
TCtcacaaagttttaaaattatagagcttggtgcaggtagattagNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGGACAATAAAATGTGACGT
CATAGAAAATTACAAAAGCCTCGAGGGACGTATAATAAAGATAACTATCC
TCCAAATGATGCTGGTGATTAAGGAATTGTTTACATCTACTTTCTTAATA
GTTGGTGACATCGAGCTACCTGGCGGACGGAGGGGACGGTTACACCATGC
TGAAGAAGAACGAAGGCCTCGTCAAAGGTGAAGATGCTTTAAACGCCCTC
GACGCCTACTTTTAGCAAGATGTCGCCTGTCACCGCTAAAATTGAAGGGC
GGGTCATCGATATATCTACTGGTGATTTGTATAGACATTCTTCGTCAAGT
GCGTTGCGTTCAGGATCGATCAATGGCATGGTATTCTTTCTTTGTTTGGT
GTTTTGTCTGTTAAGATtataacagattttttgaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033816XLOC_033816Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053588-exon-scaffold_233-1491911889:887523..887772TCONS_00053588-exon-scaffold_233-1491911889:887523..887772Clytia hemisphaericaexon
TCONS_00053588-exon-scaffold_233-1510915933:887523..887772TCONS_00053588-exon-scaffold_233-1510915933:887523..887772Clytia hemisphaericaexon
TCONS_00053588-exon-scaffold_233-1575043694:887523..887772TCONS_00053588-exon-scaffold_233-1575043694:887523..887772Clytia hemisphaericaexon
TCONS_00053588-exon-scaffold_233-1491911889:887993..888197TCONS_00053588-exon-scaffold_233-1491911889:887993..888197Clytia hemisphaericaexon
TCONS_00053588-exon-scaffold_233-1510915933:887993..888197TCONS_00053588-exon-scaffold_233-1510915933:887993..888197Clytia hemisphaericaexon
TCONS_00053588-exon-scaffold_233-1575043694:887993..888197TCONS_00053588-exon-scaffold_233-1575043694:887993..888197Clytia hemisphaericaexon
TCONS_00053588-exon-scaffold_233-1491911889:888431..888580TCONS_00053588-exon-scaffold_233-1491911889:888431..888580Clytia hemisphaericaexon
TCONS_00053588-exon-scaffold_233-1510915933:888431..888580TCONS_00053588-exon-scaffold_233-1510915933:888431..888580Clytia hemisphaericaexon
TCONS_00053588-exon-scaffold_233-1575043694:888431..888580TCONS_00053588-exon-scaffold_233-1575043694:888431..888580Clytia hemisphaericaexon
TCONS_00053588-exon-scaffold_233-1491911889:888736..888857TCONS_00053588-exon-scaffold_233-1491911889:888736..888857Clytia hemisphaericaexon
TCONS_00053588-exon-scaffold_233-1510915933:888736..888857TCONS_00053588-exon-scaffold_233-1510915933:888736..888857Clytia hemisphaericaexon
TCONS_00053588-exon-scaffold_233-1575043694:888736..888857TCONS_00053588-exon-scaffold_233-1575043694:888736..888857Clytia hemisphaericaexon
TCONS_00053588-exon-scaffold_233-1491911889:889824..890108TCONS_00053588-exon-scaffold_233-1491911889:889824..890108Clytia hemisphaericaexon
TCONS_00053588-exon-scaffold_233-1510915933:889824..890108TCONS_00053588-exon-scaffold_233-1510915933:889824..890108Clytia hemisphaericaexon
TCONS_00053588-exon-scaffold_233-1575043694:889824..890108TCONS_00053588-exon-scaffold_233-1575043694:889824..890108Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:887523..890108 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.07208	3.43638	1.48809	0.743136	1.20388	0.647646	4.15728	5.20938	3.08484	3.19028	2.07698	2.2656	15.557	15.8343	5.82568	7.24682	6.52268	6.59956	29.6887	29.6706	8.67607	8.41558	5.01969	4.96026	9.26341	8.01117	1.0463	0.583937	10.0582	8.81676
Blast
[Close]
BLAST of TCONS_00053588 vs. Swiss-Prot (Human)
Match: 5NTD (5'-nucleotidase OS=Homo sapiens GN=NT5E PE=1 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 9.481e-59
Identity = 103/260 (39.62%), Postives = 156/260 (60.00%), Query Frame = 2 
Query:    2 PSVEKVEGPYPFMAQRDDGTECPVVQDFTYGKYLGNLKLTFDENGKLLSAQGNPIMLNVSYAEDEEVLKMVDEMDDPIIKARMDPIGRSYVRLEGDRSICRLKECNLGNFFADALVDAQVKNPSTEQWAETVLAIWNGGGIRSGNIDRSFDADISREELNTISPFGNTADVMEIKGKYLLQAFEHGFSGIDTKEGRFPQVSGFRILYDKTKPVGRRLVRALALCNKCRVPXXXXXXXXXXXXLVTSSYLADGGDGYTMLK 781
            PS E   G YPF+   DDG + PVVQ + +GKYLG LK+ FDE G ++S+ GNPI+LN S  ED  +   +++    +       +G++ V L+G    CR +ECN+GN   DA+++  +++     W    + I NGGGIRS  ID   +  I+ E L  + PFG T D++++KG  L +AFEH         G F QV G  ++YD ++  G R+V+   LC KCRVP Y+ +K +++YK++  ++LA+GGDG+ M+K
Sbjct:  254 PSKEVPAGKYPFIVTSDDGRKVPVVQAYAFGKYLGYLKIEFDERGNVISSHGNPILLNSSIPEDPSIKADINKWRIKLDNYSTQELGKTIVYLDGSSQSCRFRECNMGNLICDAMINNNLRHTDEMFWNHVSMCILNGGGIRS-PIDERNNGTITWENLAAVLPFGGTFDLVQLKGSTLKKAFEHSVHRYGQSTGEFLQVGGIHVVYDLSRKPGDRVVKLDVLCTKCRVPSYDPLKMDEVYKVILPNFLANGGDGFQMIK 512
The following BLAST results are available for this feature:
BLAST of TCONS_00053588 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
5NTD9.481e-5939.625'-nucleotidase OS=Homo sapiens GN=NT5E PE=1 SV=1[more]
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