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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053570 ID=TCONS_00053570|Name=TCONS_00053570|organism=Clytia hemisphaerica|type=transcript|length=2113bp
TCTTTCTTACGTACATATAAATAATCTCTTGAAATGTCTTTATTGAAAGA
TGAGAGAGGAGAACGGTTATATGGAGTAATACGATTGTAATAAGAGTATT
TGAAAACGGAAAGAAAGTAATAGATACGAACTGAAAGAAAAACGATATTg
gtCATTAAAATGTCAGCTTCCGAAGAGAACTTTAACAAAGGAGTGCAAGT
TATGGAAAACTTGATGGAAGTTTTGAAACATCTACCAGAGAAATTGGGAA
CGATTGAAGCACTGCGACAAAACTCTCCAGCAACGTGCAGTCCACCGAAA
TTGGTGCTACGCGAGGCTGGCACGCAAACCGAAGATTCGAACGTATATGC
CATTTTATCTACCGTTGTCACTGAGTTGAAAGGTTTGAAAAGCCATGTCA
GCTCTTTGGAAAGCAAATTTGATTGCTTTAGTAGAGAGGTGGTGGATGGT
TTAAACCAGCAGGTGTCTAACCATCACAATCAACGATCGAGTAGTTATGA
AGGCTCACCCACAAGGAGAGAGTTAGACGACTATAATATTGCACCGAGTC
TACTTTCCCCGTCAAGTCTCTGGCCGCAATTCTCAAATCACCAAAGCCAC
AGTGAAAATATCGAAATCGTACAGCCAGAGATCGATCAACCGTTAAACAT
TCAGATCGGATCAGTTTACAACATTAAAAAGGAGATCCCTCCAAGCCAAG
ATGCAATCGTTCAGCCAAATCCTCAAATGATGCTGCTGACAAAACAACCT
GAGGACTCTATCAACCAAAGAAATCGAAGCtatcaacaatcaaatcaaag
taAAAGAAATGCAAAGTTAAGGggacaagaaacaaaaagagGAAGATGTA
TGCGTAACGGATGCGCCATTTTCATACGTCAACAACTTGCAAAATCATAC
ACATCAGAAGAGCTAGCCAGTAGAAGAGTTAATGCTAGTAGACGGACCTA
CCAAAAAGCCGAGATTAATAGTTCTGCTTTGTCACCTAATCGATTGAAAG
TGATCATGAACAGTGCAAAAGCCTTGTATAAAgatgaatttgaaaaactt
catgAGAAGGGAGAACTTAATGAAATCGTGAACTCGAAATGTAGAGCTGT
CAAGTGCAAGCTTAAAAAACTGAAGTGAAATCTGGTGAGATGTATTATAG
GCATTAACAATACGTATAAAAATGCAATGCtatacaaaaacattttccag
acgatttttcattgcattcgaatttataaaatcaacatttttctttggaa
aatataaaattatatgtaatacataataaatttttgggatgagctggagt
ttttataagatacttaactaattggtcatttgaagtaatagagatgacgc
gttctatagaaaaagtaataagattgtttttattacaagctaacgaccaa
ccaaatcacattagagcttgtaaaaactccagcttgtcccaaattTTCAC
GACCTTCATTATGACTAGCTAAAAAATTTTTAAGACTCAAATACGCTCAT
GCTATGCTTTTGTAATGacgtaccttaagtggataaattttggcggggat
taaatttggcgaatttgacGACTTGTgccaaaatttgccaaattatatcc
ttgccaaaatttccacattcggcaattcgccaaattaaatccccgccaaa
tttaacaaaaagagaattatgtgaaaaatcacaactttttagtatatttt
tgagtaattttcacccatttcagtgtgacaaaatttccaattcacCAAAT
TAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNgccaaattttacgaaattgatctatcgccaaattaaatc
cccaccaaaaatcgtattttggccaatcgccaaattaaatccacgccaaa
atttatccacttacgGTATTACATAGATGATTTACATATTGACAGTATAC
AGTAAATTATTATCTGAAATTTTGTAAACTGAGGCTCATTTGAAATTATG
CTTGTCAATACTAAagttatttcaagattttataaaaaacatgcgTATTT
ATGTTCAAAGattaaaataaacattttctgaatgaaaagaaatgaaattc
ttTCTGGTTCTAT Run BLAST on NCBI transcript from alignment at scaffold_233:699968..702877+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053570 ID=TCONS_00053570|Name=TCONS_00053570|organism=Clytia hemisphaerica|type=transcript|length=2910bp|location=Sequence derived from alignment at scaffold_233:699968..702877+ (Clytia hemisphaerica)
TCTTTCTTACGTACATATAAATAATCTCTTGAAATGTCTTTATTGAAAGA
TGAGAGAGGAGAACGGTTATATGGAGTAATACGATTGTAATAAGAGTATT
TGAAAACGGAAAGAAAGTAATAGATACGAACTGAAAGAAAAACGATATTg
gttattttaaaataaaaataattcgttTTAAGATTGTTGCTATGGATAAT
GTTATAATACTTCGTATATCCCATGCTTTGTTGTGTAAAAGCGTAAGATA
AAAGAGAAAGAGAGTTTCTGTAATAATGCATAATAGATTTCTTACTATGT
TAAACGATAAATACACGTTGCAGCAAATGTGctcaaaaatcgaattttta
acACAGAAATCGTGAAAATATACATAAAGCGATGAAAGAAAGAGATAAAC
GAAATAGAGAATCGTGTGGCAAGAGAAATAATTTGCACTAAGTGTGTGTT
TAGAAATCTTTTCACTAGAATCAAAGGACTTACAAATATTTGTAAGTCGT
TGCTAGAACAGAACTAAGAGTGGGGGAATCTTTCATTTATAATTGTAGAA
TCTCTACATGGGCTTAGAATGTACTCTATATGGTCCTATATGCTTCATAC
AGTCGACAACACTATATCGAAATGACAAGTATTGCCTTGAaggggaaata
tttcccgaagaGAAGTAATATTCCCCGGTTAGTAAGGAAATTCACCGGTT
AACCACCTTTTTTTAATTCCATCTTTCCTATATTTTCTTGCTGATTCGGC
ACATACTTCCAGAACAGAGCACAAAAAATTGGTGGGTGACGGCCAAATAA
TAGGGAAATTATTTCCTTTTTGGGCTTTCGGGAAATACATCATTCCTGTG
ATGGCAGTTCTTGCGATTTCGATATTATGCTGCCGACTGTCTAGCAACCA
ATCTATTTTTGAAACCTAAACTTATATtaaatcttctattttattaggtC
ATTAAAATGTCAGCTTCCGAAGAGAACTTTAACAAAGGAGTGCAAGTTAT
GGAAAACTTGATGGAAGTTTTGAAACATCTACCAGAGAAATTGGGAACGA
TTGAAGCACTGCGACAAAACTCTCCAGCAACGTGCAGTCCACCGAAATTG
GTGCTACGCGAGGCTGGCACGCAAACCGAAGATTCGAACGTATATGCCAT
TTTATCTACCGTTGTCACTGAGTTGAAAGGTTTGAAAAGCCATGTCAGCT
CTTTGGAAAGCAAATTTGATTGCTTTAGTAGAGAGGTGGTGGATGGTTTA
AACCAGCAGGTGTCTAACCATCACAATCAACGATCGAGTAGTTATGAAGG
CTCACCCACAAGGAGAGAGTTAGACGACTATAATATTGCACCGAGTCTAC
TTTCCCCGTCAAGTCTCTGGCCGCAATTCTCAAATCACCAAAGCCACAGT
GAAAATATCGAAATCGTACAGCCAGAGATCGATCAACCGTTAAACATTCA
GATCGGATCAGTTTACAACATTAAAAAGGAGATCCCTCCAAGCCAAGATG
CAATCGTTCAGCCAAATCCTCAAATGATGCTGCTGACAAAACAACCTGAG
GACTCTATCAACCAAAGAAATCGAAGCtatcaacaatcaaatcaaagtaA
AAGAAATGCAAAGTTAAGGggacaagaaacaaaaagagGAAGATGTATGC
GTAACGGATGCGCCATTTTCATACGTCAACAACTTGCAAAATCATACACA
TCAGAAGAGCTAGCCAGTAGAAGAGTTAATGCTAGTAGACGGACCTACCA
AAAAGCCGAGATTAATAGTTCTGCTTTGTCACCTAATCGATTGAAAGTGA
TCATGAACAGTGCAAAAGCCTTGTATAAAgatgaatttgaaaaacttcat
gAGAAGGGAGAACTTAATGAAATCGTGAACTCGAAATGTAGAGCTGTCAA
GTGCAAGCTTAAAAAACTGAAGTGAAATCTGGTGAGATGTATTATAGGCA
TTAACAATACGTATAAAAATGCAATGCtatacaaaaacattttccagacg
atttttcattgcattcgaatttataaaatcaacatttttctttggaaaat
ataaaattatatgtaatacataataaatttttgggatgagctggagtttt
tataagatacttaactaattggtcatttgaagtaatagagatgacgcgtt
ctatagaaaaagtaataagattgtttttattacaagctaacgaccaacca
aatcacattagagcttgtaaaaactccagcttgtcccaaattTTCACGAC
CTTCATTATGACTAGCTAAAAAATTTTTAAGACTCAAATACGCTCATGCT
ATGCTTTTGTAATGacgtaccttaagtggataaattttggcggggattaa
atttggcgaatttgacGACTTGTgccaaaatttgccaaattatatccttg
ccaaaatttccacattcggcaattcgccaaattaaatccccgccaaattt
aacaaaaagagaattatgtgaaaaatcacaactttttagtatatttttga
gtaattttcacccatttcagtgtgacaaaatttccaattcacCAAATTAA
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNgccaaattttacgaaattgatctatcgccaaattaaatcccc
accaaaaatcgtattttggccaatcgccaaattaaatccacgccaaaatt
tatccacttacgGTATTACATAGATGATTTACATATTGACAGTATACAGT
AAATTATTATCTGAAATTTTGTAAACTGAGGCTCATTTGAAATTATGCTT
GTCAATACTAAagttatttcaagattttataaaaaacatgcgTATTTATG
TTCAAAGattaaaataaacattttctgaatgaaaagaaatgaaattcttT
CTGGTTCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053570-exon-scaffold_233-1491911889:699968..700117 | TCONS_00053570-exon-scaffold_233-1491911889:699968..700117 | Clytia hemisphaerica | exon |
| TCONS_00053570-exon-scaffold_233-1510915933:699968..700117 | TCONS_00053570-exon-scaffold_233-1510915933:699968..700117 | Clytia hemisphaerica | exon |
| TCONS_00053570-exon-scaffold_233-1575043694:699968..700117 | TCONS_00053570-exon-scaffold_233-1575043694:699968..700117 | Clytia hemisphaerica | exon |
| TCONS_00053570-exon-scaffold_233-1491911889:700915..702877 | TCONS_00053570-exon-scaffold_233-1491911889:700915..702877 | Clytia hemisphaerica | exon |
| TCONS_00053570-exon-scaffold_233-1510915933:700915..702877 | TCONS_00053570-exon-scaffold_233-1510915933:700915..702877 | Clytia hemisphaerica | exon |
| TCONS_00053570-exon-scaffold_233-1575043694:700915..702877 | TCONS_00053570-exon-scaffold_233-1575043694:700915..702877 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:699968..702877 + |
Blast
The following BLAST results are available for this feature:
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