TCONS_00053553 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053553
Unique NameTCONS_00053553
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3327

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053553 ID=TCONS_00053553|Name=TCONS_00053553|organism=Clytia hemisphaerica|type=transcript|length=3327bp
CCCGCATTCTAAACCCTTCTTCTCTTTTCTCCAACTCGGAGAAAGCACGT
GTGGGATTTTcccaaattcaaaaaattgtaaagactttttaccacaaatt
tactttgaaaagtaaaaaataagcttCTACTGCTAATAATACGACAACAT
GGCTGACGAATGGGATGAAGGAACATCCTCAGGAAACACGGGATTTGGTG
GTGGAAGCTCAGGTGGCTTTGGAGGTGGAAGCTCAGGTGGTTTTGGCGGT
GACTCAAATGATAATGATGACAGCGGTGGTAGTTTCAGAGGTGGAAGAGG
TAGAGGACGTGGTCGTGGAAGAGGCAGAGGACGCGGTCGTGGTGGATTTG
GAGGTGGTGATGGAGATGCAGCTGGAGGTGGTGGTTTTGGTGGAGGAGAT
GACACTGGAGAGGTTGATGAAAATGGTGAACCCATTAGACCTCTTCATGA
AGTTGATCCAGACAAACCAGCACCAGTTACATATGTACCCCCAGAACCAT
CAGAGGCTGAAGAAGAGATTTTCCAAACAATTGCTCAAGGAATCAATTTC
GATCAATATGATAATATTCCTGTTGAAATCACTGGCCCTGGAGAGATGCC
AACTGCTGTCAGAAGTTTTGAAGAGGCTGGTCTTGCACCTGGGGTCTTAG
AGAACATCAAGAAAGCTAAATATACTAAACCAACACCTGTCCAAAAATAT
GCCCTCCCGGCTGTGTTAGCAAAACGTGATCTGATGGCTTGTGCCCAAAC
TGGATCAGGAAAAACAgcTGCTTTCCTCTTACCTGTGTTGACTGGCATAC
TTGAACATAGAGATGAGTTCACCAGTCAGTTAAGTGAGGTTCAAGCACCT
ATTGCTTTGGTAATTGCACCAACTCGTGAACTTGCAACACAGATCTTTAA
TGAAGCACGAAAATTCTCTCATGGAACCAGCATTCGACCAGTTGTTGTTT
ATGGTGGTGTCAGTGTTGCACATCAGTTGCGCCAGGTTGAGGCTGGTTGT
CACCTTTTGATTGGCACACCTGGACGTTTGAAGGATTTTATGGGTCGTAG
AAAAATCACACTTGAAAACCTGAAGTATCTTGTTCTTGATGAAGCAGACA
GAATGCTTGACATGGGTTTCATGCCAGATGTAAAAACGATTGTCTCAGAT
TTCAATATGCCTGAAAAAGAAGAACGGCACACCCTCATGTTTAGCGCAAC
ATTCCCCGAGCAGATTCAAAAGCTTGCTAGTGACTTTCTTAACCAATATG
TTTTCATAACTATTGGTAAAATTGGTAGTACACATTCTGGTATTGAGCAG
AAAGTTGTAGAAATAGAGGATTCCGGGAAGCGTGATAGACTTGTTGACAT
TCTTGGCAATGAAGGAACCAACAGGAATCTTGTTTTTGTGCAAACGAAAC
GATTGGCTGATTTCTTAGCAAGTTATTTATGTCAGAATGGATTCCCAACA
ACAAGTATCCATGGGGATCGTTACCAACAACAACGTGAGGAAGCTTTGCG
AGAATTCAAGAGAGGTGAGCAAACAGTCCTTATTGCCACCCAAGTTGCCG
CTCGTGGTTTGGACATTGCTGATGTTAAACAAGTTATCAACTATGATCTT
CCTGATGAAATAGAAGAATATATCCATCGAATCGGTCGTACCGGACGGAT
TGGTAACAAAGGAAAAGCCATTTCCTTTTTTACACGTGGAAAAGATGATG
GGTTAGCTCGTGCACTTGTCAAAACCTTAGCTGACgCTGAGCAAGAAGTT
CCTGACTGGTTGGAAGAAGTTGCTGAGACTGCACTTGGTACAGGCTATGG
ACCAAAAGGTGGTCGATTCGCTTCCAAAGACACTCGTGATGGTGGCGGTG
GCGGACAATTCAACGCCATGGGTAACAATGATGGCTGGGGTGGCGGTGAA
ACACCTGCAGCCGGTGGTGGTGGCGGTGGCGCTGCTGAAGAAGATGATTG
GGATTAAGAAATGCAGGTTAAAAAGCGTCGCCATATGGATAAGGTTGTTG
TCACTCACGTTTGTTTATGCATTTTGCTTGGCAACAGAATTGGACTTGGT
TGGTTCAGTAACTTGACATCAAATTTGCATTCTATTTTTCTTCAACTTTA
TCCTTGCCGCTGAGAGCACCTTAAGGGGTGAGAATTTTAAACAGTGGTGT
ACAAAAGGACgttgtttaaaaaatttgttcataTTCAAGAAACAGTTGGT
TTGTTGTTACTATAGAAActaaaaacgaaaacaaaaactTGATGATACTA
TTCGTGTATTGGACTTTGATTCGATATATTAGAATCGGAAACTTTTTTAC
GATTGCATAGGAACCTTGAACTCGAATATCTTTCATACTTTGgtaattct
tttgaaaaagagttCTATCAGAGAACCTTCCGTAAAGATAAAATACTACG
AAAGACATTCGATTTCAGATCTGAtctgttttttatttcagaccTGTTTT
CTTATAGGTGTAAATAGTCAGGAACTTTTGtgatttattttcaaagattt
attttattcttatatAGTCTTTCTTATGCTTATTTAGTAGCCACCTAggt
tttattttataattttgcaAACCCTTTTGATATTCTTCATAACGTCCAGC
CCTATCGATTATTTCTTGAATCATTTTACAACGATATCCGATAGTCTTTG
TCTATAGATTCGCTCTCAGTTGTTATCAGcgtcaatagaccttatcggag
tttttgatttttctaaaaaagcgatgcattgtgggattgtttcgagtgta
ttacaatagaaatctcttggAATtactcgagggaattctattgtcataca
ctcgaaacaatcccacaatgcatcgcttttttagaaaaatcaaaaactcc
gataaggtctattggtgtcaagtattcatgatatacaccattacgatgtc
ttccacggacccaacagcagACCCAATATTGACTGGTTTTACATCGcata
caaccaatcagctattgggtcttctgacattgcaatggtgcatatcatgc
aTTTGAATTGTGTTTATTTTCCGGTAAGGATTTTCTTCTATCTATGCAAG
ATTGTATAACGGtaatatttaaagaaattataCATTGCTTGCCCTAGGTT
ATTAGTTCTTCATAAGAAATAACAATTAATTAAgcatttgaaaaatcatt
tttttaattccCCTTCCCCTTAAAACTTTTCCCTCCTGCCTAACTgacct
ttttcaaaatccaTTCCTAATAAGTGAGATGTTAGAGAAAGTTTGGATCT
TAAGGTTGGACAACTTTCTGACAGTAACagaaattatatattatatatat
ctATCTATGATTATATCAGTTTCTGGG
Run BLAST on NCBI

transcript from alignment at scaffold_233:463378..473977+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053553 ID=TCONS_00053553|Name=TCONS_00053553|organism=Clytia hemisphaerica|type=transcript|length=10600bp|location=Sequence derived from alignment at scaffold_233:463378..473977+ (Clytia hemisphaerica)
CCCGCATTCTAAACCCTTCTTCTCTTTTCTCCAACTCGGAGAAAGCACGT
GTGGGATTTTcccaaattcaaaaaattgtaaagactttttaccacaaatt
tactttgaaaagtaaaaaataagcttCTACTGCTAATAATACGACAACAT
GGCTGACGAATGGGATGAAGGAACATCCTCAGGAAACACGGTAAGCTCCA
TAATTTATTGCATTGTAGGAAGCTTTTTGTCGATCGAATAAACATGTTTT
TATTGTCAGGTATATAGTTAACAAATTACTTTATGAAACGAAATAACAAG
GATCAAAGAGTCTTTCTTTGGGGCTCTAGTTATTATCTAATAGGGTTGGT
GTATTACCAGGTATTACACCTTTCCAGTAATCCAGACAGAGTCAATTGAA
CAAGTTCAAATGAAAATCGCGATCGAACCAATAGAATGTAATGTGTTTGA
TTGTATTTGCACAACCATTTCCGTTTGGTTTGGAAACGTGAACTTCTGAT
GTTTAAATatttcaatacacctttcccgtaattcaaacttctcagaaata
GCCCGGGAAAATGTGAGCTCCACTGTCAGTCAGgaacaagtgcaaattag
gatacctgTTGGCAATCTCTTCTACTCAGGAGAGTTGTATCCTAATTTTG
AGATTTAGGTACATCCTTACTGCTTTGATCCGCGATTGGattttttcatc
aagatttgcaccactgaccaaaatttcaagtaatttgCTTTTGCGTATGC
TAGTTAGCACATTTTGAGCTAGCTAGTGGTTTTGGGCTATAGTTTTGCAT
TCCGCCAAACTCAATGAAATTCAGTACACAATCTCATTTGCTTATTATTT
ACATCTTGGAAGTGGTAAGATGGGGCGGATGTCTCTGGTTGGTGAAAAAT
AcaggttttttggtttttagtatcCTAATTAGGATGACGTTTAGGATGTT
GATTGCTACTTTGGATACTTTTTTGTATCCAATTTAAGATACTCTCCTAT
GTAGGAGAGGCCGAAGGTATTctaatttgcacttgttcttgactgactgg
agtgtataaaattgtttggggaGATAAAcgaacgcgtttttgcctgcgag
gggttaaggatggaaaattttcattctaggtatggggaactcaccaaaat
caattcaaaattgaaaaacatctggttttatgagatgaTGTTGTGATTAA
TTGGATGTATAGCATATGCttagtttttctttcatttatatCAACCAGAA
TTATTACGGTTTAAAAACAACCATTCTTTCCAtttattcttgaattagaa
ctaccttagggaaaacaataagtgttaaattcatcaaattacagcttttt
atgCTTGAAGGGGGGACAGAAATTTTTGGAGGCAGGGTGGGGAAAAATGA
ggggggatggaaaatttttattctaggcatggggggaaGAGACTCTGAAG
GACACTATGAATCAATAATGATCGGTAATAATTGAAGGTGATCAGTGACC
acttatcgattctatcggtgatcgaatactcagacgatctcaatcaaacg
gaattgactgattgaaattcgattgtcgaatgcaatcaaatctcaatcga
acgtcaaaattctgggtaatatttgattgttgttcgactggttcgattgt
cgattccgttcgattgagatcgtctggtatCAGCTTAGTGATCTGGTGAT
GGTGGCTCAAAATTTGATTACCCGTAATGCTTTTGTTCTTTTGAATTTGC
CGGAAAGCATCGTGAGCACTGATCACTAACCACTTCAAAAAGAATATGAT
GTCTGTACCCGGAATCAAACGCAATCAATGTCAagcgaatctgaaaattg
cggtaatattcgattgagattcaacTGCGTTTGACAATTGACTTTTAATT
GGTCAattgcgtttgatttggtttgactggtgcAATCATCGATTCTgttt
gattgagattgtctgggaATCTCACTCAACTCCAAATCATGGCATtttct
ttgaccatttttgatttgtttaattGTTTCGATTACTATTATTACAATTA
TTATTACAATCACTTTCAATCATATTAATTACCTTCGATTGTGTCGGATA
TGTTTCCTGTAGTAAAGCAAAGGAATCTAAAACCGAGTTTATCTCGTCCA
ATAAAAACGCAGGATTTACGCGCGAAAACCACTTTCGCTCAGAATGCTTG
TTATGGGTTATTTGAGGAAACCCAGGCGAGCACACTCAAAATCGCAGGGA
AGTACTAAAGATGATTCTTATGGCTTCTTTTTGTggttcaatatttttgg
ttttttcaaGGTATCTATTTAATCAACTGGTTATCGAAGAAGTCAATGGT
TATCGAGGAAGTTATTGAAAGTAATTAATTACAAACAAAGTACTCAAACA
GTTATCATGTCTTCGAAGACTAAATTAGTTcaactatgttctgtgaaaaa
atcataaccatcagtgaaATACTCTTTCATCTATTTAATCTTACCATCTT
gtttaggggtcactcacatattgaTTCTTCCTACAACAAAAGTCAAATTG
AGGCAAAGGGGTGGGGGGTTAGAGTCGGTGACactaagaaatttcaccag
acGTGTCGTTTATTCCCTGACAATGTTACTTTCCAGGCAATGTCAACCAA
ATTGAACAGTCATTGAACCAAGAAAATCCGGTAAAGTTCTTGATGTTCAA
TGTGTTCAAATTACTGCAAACCTATAGTTGGAAAGGGTTGGATATTAATT
ATGTCTGTTATATTTACGCACAgagcgagcggagtgcgactcttttgacA
AACacatgcgcgtaagcaaaattgACAATAATATGCAGGCccaaaaaatg
aaagtttttttttcacaatttttttcgtCTAGCTGCTATTCCACTATGTT
TACCCTCTAGCatgtttcaaatttgaaaatttcgtgaaaattagcatttt
ttagAAGAAGTagttgcagtgtcaatcttttgcaaatttaaaaacccact
tttccttggaaaaaattgatgttttttgtcGAGAATGCAATGTTGGAGGA
GGCTTTAGGAcgacttaaaataaaaattggttaacatttgggtaagcggt
gtgagaaaatcaaaacaaaacagctgAAAAGAACTGAAATTTCAGAATTA
ACAAaaggaaaatgcaaaaaatatgtTCTGATGAGCTCTTACTATTCTCC
CAAAAAGTTAGTGAAATTAAATCTGaaatataaaagaaattattacaaaa
ctactcAACACACGAGCCAAATATATTCAGCTTTCGGCACTTTCGTTCGT
GAAACCAAACAGTTCTTTTTATCAATGAATGCatgcataaaaacttgaaa
ttctttaatacttgtgaaaaatattttccataatAAAACAAGGAAAATTC
AATGTCTTTCATTAAACCAGCAAACAAGGGATTTTTGTGTCTCTCCCAAT
TCTCCTTAAAActgtgtctttgacttttcagcatcaTTTCTTTGACAATC
AACGCTTCTTACTTCGAAAATTTGACACGTTTACTACATGGCTCtgaatg
gggttctaggtccccccacttttcagtaaggttcaggtcccagtttAAAT
CTAAAGGTTCGGGTCCCTGCAAAAAGTACTttcaaggttcaggtcccaga
aaagaaaaatcattcggcaccaaattatttcaatttcaatatgttatata
ttttttaatatttcttaaaagaaatctaaagaaaaatgatatatattttt
aaaaacatataagAAGGTTCTGATTGAGAAAAAATATGCACCCTTTAGTT
CTTAATTGCCCTCTGAAATGTGCTGAGAGGCCTAACTTTTTCAATAATAG
AAGGTTATTGTGATCAAATCGCcatcaaatcaaaattaaaacattttaaa
gtgCTTCGCTCGCAACAATAGATGTCAACAaagcaaaacattcgaatcgc
tTCACAACaatggaatgtcttctttttgTGGTGTGTGTACCACCCCCTCT
TGCATgcagataaaaataaaacaatagaatatttaaaaacagaacgttaa
aaccaaacaaaaaaatatttttacaatttcttaattATTGTAAATAGCCT
CCAGAACTTAAGTGCAGCCCTtcaggtccccccacttttttagccccccc
ccctgagtttaaaaaatgagacagctcCCACCCACTTTTAGACCGATTTT
AGATTTACACCCCCCCCCAAATTAAATAAGGGGGGGGGCGGAGCCATATT
TACAGCTTGACATTAGTTGAGAGTCGAGAAGTTCATCAATTAGTTGGAAC
AACGAATCTAACGAAATTTTGGAACAAAAACTAGCTAACTTAAAGATTCC
GGGCCTCATctaaaaagacccactagatcaaaagttaaggggtggtacag
gaaaagccctcCCCCCTAGTTTTAAACCGCCCCTAAAaacctagtatgaa
tagggttaagtgaATACAACTGTTCCTTTGCTTAAAaattattctttaaa
agtagaAATTGCAttgtatatttataaaaacGCATTGTGAAAGCTAAATA
ATTTTGAGGCCTTGGTGGGCTTATTTAGCTTTTCTTCTTTCTCCAAAAAG
TCGAgctcatttgaaaatttgatcctTGTGTTAAAAGTTAAAAGTGTATT
GTTTAGGATGtacatttcagaaattactgttAAAAGAATTAgttgtcttt
tttttaaattggagAAAAACTCTAAAATTGGGTTAGTACAGAataaaata
tttggaaacattatGCACATAGACCACCCCCTCACGGTGTGAACCCCCCT
TTTTgaacctaccccggtggggtggaggtcctataaattaacccgtgttc
gttcgttagttagttagttaccagcttttctcgagattgactcattagtt
ttttctgatttttggcgaccataaaccctcgaatgtgacggagcccaatt
ttcggggaaaaaattttgggcaaatttgggccaaaaaacagcttaaaaac
aagttttttggactttgtgaaaaattagatcattaattttttctgatttt
taacatgaaagtagggtacagtcatagttaaaagatggctcaaccagatt
tttgcaaaaatttttttggctcaaaaattgcatttttatctataagaacc
acttttaataagaatacatcaatgttcttagccatattattattattatt
attttattagttttttttaaagatgaaaatgtcacggtggagcgcgatgg
tttgagttttctgtaaacacttattatttttttggctgaaaaatgaatct
ttatctataagaatcactatttatgagcatagatcaatgttattagaaaa
gaaaaatgtcacggtagagcgcgacggtttgagttttctggaaaccttat
ttattaagctgtgcatttttctgatagtggttttCATAAAGAAAAGcact
taatagcttttttatttctttttcaaaaatatttttcaatagtgttgata
gtttcttatgtgtttcattgtttcaatgttcactgattagtttgataacc
aagtaggtccataaaagtatcgcttgttaaTAGGGGATTAGAGTGCTTTA
TAGGGGGTAGGAGATTTTCCAAATCAAatgggggatcaaataaaaatagt
AAATTTGTGAACAAAGATTTGCAAATATGGTTTTTTTTCAGGGTTTAAGT
AGTGACCAATAGTTTTTACCCATAAAAATGGGGGGGGATCAGACGACTGC
ACACTATGGCccctttttttttcaggaaaaacttCTCTGCTCTCAGGATC
ATTTTCCTCAAATGTGCTAATTATTTCATAACTCTCTTATCAGCCAAAAC
TCCACCTAAGGATTTAAAATCTGgagttttttttctcaaacatcagttgt
ttgtttgttttttcagaaaaatatatcaTTTCATATTTATTCTCTTTTCA
GGGATTTGGTGGTGGAAGCTCAGGTGGCTNgtttgtttgttttttcagaa
aatatatcattTCATATTTATTCTCTTTTCAGGGATTTGGTGGTGGAAGC
TCAGGTGGCTTTGGAGGTGGAAGCTCAGGTGGTTTTGGCGGTGACTCAAA
TGATAATGATGACAGCGGTGGTAGTTTCAGAGGTGGAAGAGGTAGAGGTA
GAGGACGTGGCCGAGGAAGAGGAAGGGGAAGAGGCGGATTTGGAGGATCT
GATAACAATGACTCAAATGGTGGTGGCTTCGGAGGAGGTTTTGGTGGAGA
AAGTTCAGGTGGTGGCTTTGGTTCAGGCGGTGGTGGCGGTGGTTTTGGAG
ACGATTCTGGTGGAGGTTTCGGTGGGAGCTCTGGTGGTTTTGGAGGTGAT
GACTCAGGTGGCTTTGGTGGAGATTCTGATGGAGATGGTGGCCGCGGGAG
AGGTAGAGGACGTGGTCGTGGAAGAGGCAGAGGACGCGGTCGTGGTGGAT
TTGGAGGTGGTGATGGAGATGCAGCTGGAGGTGGTGGTTTTGGTGGAGGA
GATGACACTGGAGAGGTTGATGAAAATGGTGAACCCATTAGACCTCTTCA
TGAAGTTGATCCAGACAAACCAGCACCAGTTACATATGTACCCCCAGAAC
CATCAGAGGCTGAAGAAGAGATTTTCCAAACAATTGCTCAAGGAATCAAT
TTCGATCAATATGATAATATTCCTGTTGAAATCACTGGCCCTGGAGAGAT
GCCAACTGCTGTCAGAAGTTTTGAAGAGGCTGGTCTTGCACCTGGGGTCT
TAGAGAACATCAAGAAAGCTAAATATACTAAACCAACACCTGTCCAAAAA
TATGCCCTCCCGGCTGTGTTAGCAAAACGTGATCTGATGGCTTGTGCCCA
AACTGGATCAGGAAAAACAGTAAGTGTGtttaaatgttttgataaaGGTT
ATAATTAAAAAAGTAATCATCTCTTTCTCGAATTCTTATTTAGGTTTCAA
CCAGGAagaataatttttattatttatatttCCTCAGTTGAATCaagaga
tttgtttttctttaggcTGCTTTCCTCTTACCTGTGTTGACTGGCATACT
TGAACATAGAGATGAGTTCACCAGTCAGTTAAGTGAGGTTCAAGCACCTA
TTGCTTTGGTAATTGCACCAACTCGTGAACTTGCAACACAGATCTTTAAT
GAAGCACGAAAATTCTCTCATGGAACCAGCATTCGACCAGTTGTTGTTTA
TGGTGGTGTCAGTGTTGCACATCAGTTGCGCCAGGTTGAGGCTGGTTGTC
ACCTTTTGATTGGCACACCTGGACGTTTGAAGGATTTTATGGGTCGTAGA
AAAGTAAGATTTTTTACTACTCTCggatacctaatagccgggggtgctaa
tttaacgattaatcacactcctctaaaccaatcagattcgaatAATTTTG
CGCGGCTGACGATTACTTTAAGAAACTGCATGCTTTTGCAAGCTTCTTTT
TTATAGCGATTTAGATCTCACTTTTTATACTTATGACATTAACAATGTTT
TCCATTTTCAATATATCaacaaataaataatataaatacCAGTAAATact
catttttgaaaactttcttgTATTTTAGATCACACTTGAAAACCTGAAGT
ATCTTGTTCTTGATGAAGCAGACAGAATGCTTGACATGGGTTTCATGCCA
GATGTAAAAACGATTGTCTCAGATTTCAATATGCCTGAAAAAGAAGAACG
GCACACCCTCATGTTTAGCGCAACATTCCCCGAGCAGATTCAAAAGCTTG
CTAGTGACTTTCTTAACCAATATGTTTTCATAACTATTGGTAAAATTGGT
AGTACACATTCTGGTATTGAGCAGAAAGTTGTAGAAATAGAGGATTCCGG
GAAGCGTGATAGACTTGTTGACATTCTTGGCAATGAAGGAACCAACAGGA
ATCTTGTTTTTGTGCAAACGAAACGATTGGCTGATTTCTTAGCAAGTTAT
TTATGTCAGAATGGATTCCCAACAACAAGTATCCATGGGTTAGTATTTGT
TAATCCTCTTCTCACTGCAATTTACTATCTTCATTCTTAACTTTCAAAGC
AGAAATGTGAGACAGTTCCTCATttgttttaaaatctttaaaatcgaTCA
ATATTTTCTGTAAGATTTCGTCTTTTATGTACAGTCTACTCTCCctaatt
caaattttctttaatttgaattaagacattgccccccccccctcagctTG
AAAATGCATAAAATGTCCTCTATAATTTGAATGTTTCTCTAAACGTTTAG
TCCCTCTAAGGTCGAATTCAAGAGAGGAAGCATCTAATACTTACCTTGAA
ATTCCAGGGATCGTTACCAACAACAACGTGAGGAAGCTTTGCGAGAATTC
AAGAGAGGTGAGCAAACAGTCCTTATTGCCACCCAAGTTGCCGCTCGTGG
TTTGGACATTGCTGATGTTAAACAAGTTATCAACTATGATCTTCCTGATG
AAATAGAAGAATATATCCATCGAATCGGTCGTACCGGACGGATTGGTAAC
AAAGGAAAAGCCATTTCCTTTTTTACACGTGGAAAAGATGATGGGTTAGC
TCGTGCACTTGTCAAAACCTTAGCTGACGTAAGTATTTGTTATTCTTTGT
TAAGAGCTTATCTAATATTTTTTGGCGTGAAAGAGATTTTGTCATTTAGA
CAAATGTGTTGTCACTACTTGACTTATAAATTGACCAGTAGTTTTCTAGC
CGCATTTGAATCATTTCATGTCAGGAATTTCCATTCAAttgacttgattt
ttttttgtaggCTGAGCAAGAAGTTCCTGACTGGTTGGAAGAAGTTGCTG
AGACTGCACTTGGTACAGGCTATGGACCAAAAGGTGGTCGATTCGCTTCC
AAAGACACTCGTGATGTAAGTAGTAGTTTTAGTCAGAGGCACAGAAGTAC
GCTGTCACCTAGAATTCAAGATTTGATCATTTTCCATAAAGCATAGCTAG
AATAGTCTATCacatgtaaaaataatttctgTTGCTAATGAAACGGTTTT
AAGGGAGGGTTGAAAGAGAAATTTTCCTTACGAGAAAACAATAACTTGAA
TATTTCTTTCTAAAGAAAGTTGAAGGAACCAGCATTTAGAATCATATACC
ATCCTTTTTTCAGGGTGGCGGTGGCGGACAATTCAACGCCATGGGTAACA
ATGATGGCTGGGGTGGCGGTGAAACACCTGCAGCCGGTGGTGGTGGCGGT
GGCGCTGCTGAAGAAGATGATTGGGATTAAGAAATGCAGGTTAAAAAGCG
TCGCCATATGGATAAGGTTGTTGTCACTCACGTTTGTTTATGCATTTTGC
TTGGCAACAGAATTGGACTTGGTTGGTTCAGTAACTTGACATCAAATTTG
CATTCTATTTTTCTTCAACTTTATCCTTGCCGCTGAGAGCACCTTAAGGG
GTGAGAATTTTAAACAGTGGTGTACAAAAGGACgttgtttaaaaaatttg
ttcataTTCAAGAAACAGTTGGTTTGTTGTTACTATAGAAActaaaaacg
aaaacaaaaactTGATGATACTATTCGTGTATTGGACTTTGATTCGATAT
ATTAGAATCGGAAACTTTTTTACGATTGCATAGGAACCTTGAACTCGAAT
ATCTTTCATACTTTGgtaattcttttgaaaaagagttCTATCAGAGAACC
TTCCGTAAAGATAAAATACTACGAAAGACATTCGATTTCAGATCTGAtct
gttttttatttcagaccTGTTTTCTTATAGGTGTAAATAGTCAGGAACTT
TTGtgatttattttcaaagatttattttattcttatatAGTCTTTCTTAT
GCTTATTTAGTAGCCACCTAggttttattttataattttgcaAACCCTTT
TGATATTCTTCATAACGTCCAGCCCTATCGATTATTTCTTGAATCATTTT
ACAACGATATCCGATAGTCTTTGTCTATAGATTCGCTCTCAGTTGTTATC
AGcgtcaatagaccttatcggagtttttgatttttctaaaaaagcgatgc
attgtgggattgtttcgagtgtattacaatagaaatctcttggAATtact
cgagggaattctattgtcatacactcgaaacaatcccacaatgcatcgct
tttttagaaaaatcaaaaactccgataaggtctattggtgtcaagtattc
atgatatacaccattacgatgtcttccacggacccaacagcagACCCAAT
ATTGACTGGTTTTACATCGcatacaaccaatcagctattgggtcttctga
cattgcaatggtgcatatcatgcaTTTGAATTGTGTTTATTTTCCGGTAA
GGATTTTCTTCTATCTATGCAAGATTGTATAACGGtaatatttaaagaaa
ttataCATTGCTTGCCCTAGGTTATTAGTTCTTCATAAGAAATAACAATT
AATTAAgcatttgaaaaatcatttttttaattccCCTTCCCCTTAAAACT
TTTCCCTCCTGCCTAACTgacctttttcaaaatccaTTCCTAATAAGTGA
GATGTTAGAGAAAGTTTGGATCTTAAGGTTGGACAACTTTCTGACAGTAA
CagaaattatatattatatatatctATCTATGATTATATCAGTTTCTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033801XLOC_033801Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053553-exon-scaffold_233-1491911889:463378..463567TCONS_00053553-exon-scaffold_233-1491911889:463378..463567Clytia hemisphaericaexon
TCONS_00053553-exon-scaffold_233-1510915933:463378..463567TCONS_00053553-exon-scaffold_233-1510915933:463378..463567Clytia hemisphaericaexon
TCONS_00053553-exon-scaffold_233-1575043694:463378..463567TCONS_00053553-exon-scaffold_233-1575043694:463378..463567Clytia hemisphaericaexon
TCONS_00053553-exon-scaffold_233-1491911889:469410..469518TCONS_00053553-exon-scaffold_233-1491911889:469410..469518Clytia hemisphaericaexon
TCONS_00053553-exon-scaffold_233-1510915933:469410..469518TCONS_00053553-exon-scaffold_233-1510915933:469410..469518Clytia hemisphaericaexon
TCONS_00053553-exon-scaffold_233-1575043694:469410..469518TCONS_00053553-exon-scaffold_233-1575043694:469410..469518Clytia hemisphaericaexon
TCONS_00053553-exon-scaffold_233-1491911889:469780..470246TCONS_00053553-exon-scaffold_233-1491911889:469780..470246Clytia hemisphaericaexon
TCONS_00053553-exon-scaffold_233-1510915933:469780..470246TCONS_00053553-exon-scaffold_233-1510915933:469780..470246Clytia hemisphaericaexon
TCONS_00053553-exon-scaffold_233-1575043694:469780..470246TCONS_00053553-exon-scaffold_233-1575043694:469780..470246Clytia hemisphaericaexon
TCONS_00053553-exon-scaffold_233-1491911889:470393..470680TCONS_00053553-exon-scaffold_233-1491911889:470393..470680Clytia hemisphaericaexon
TCONS_00053553-exon-scaffold_233-1510915933:470393..470680TCONS_00053553-exon-scaffold_233-1510915933:470393..470680Clytia hemisphaericaexon
TCONS_00053553-exon-scaffold_233-1575043694:470393..470680TCONS_00053553-exon-scaffold_233-1575043694:470393..470680Clytia hemisphaericaexon
TCONS_00053553-exon-scaffold_233-1491911889:470956..471365TCONS_00053553-exon-scaffold_233-1491911889:470956..471365Clytia hemisphaericaexon
TCONS_00053553-exon-scaffold_233-1510915933:470956..471365TCONS_00053553-exon-scaffold_233-1510915933:470956..471365Clytia hemisphaericaexon
TCONS_00053553-exon-scaffold_233-1575043694:470956..471365TCONS_00053553-exon-scaffold_233-1575043694:470956..471365Clytia hemisphaericaexon
TCONS_00053553-exon-scaffold_233-1491911889:471685..471955TCONS_00053553-exon-scaffold_233-1491911889:471685..471955Clytia hemisphaericaexon
TCONS_00053553-exon-scaffold_233-1510915933:471685..471955TCONS_00053553-exon-scaffold_233-1510915933:471685..471955Clytia hemisphaericaexon
TCONS_00053553-exon-scaffold_233-1575043694:471685..471955TCONS_00053553-exon-scaffold_233-1575043694:471685..471955Clytia hemisphaericaexon
TCONS_00053553-exon-scaffold_233-1491911889:472138..472242TCONS_00053553-exon-scaffold_233-1491911889:472138..472242Clytia hemisphaericaexon
TCONS_00053553-exon-scaffold_233-1510915933:472138..472242TCONS_00053553-exon-scaffold_233-1510915933:472138..472242Clytia hemisphaericaexon
TCONS_00053553-exon-scaffold_233-1575043694:472138..472242TCONS_00053553-exon-scaffold_233-1575043694:472138..472242Clytia hemisphaericaexon
TCONS_00053553-exon-scaffold_233-1491911889:472491..473977TCONS_00053553-exon-scaffold_233-1491911889:472491..473977Clytia hemisphaericaexon
TCONS_00053553-exon-scaffold_233-1510915933:472491..473977TCONS_00053553-exon-scaffold_233-1510915933:472491..473977Clytia hemisphaericaexon
TCONS_00053553-exon-scaffold_233-1575043694:472491..473977TCONS_00053553-exon-scaffold_233-1575043694:472491..473977Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:463378..473977 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
32.8886	32.4861	35.5852	27.8262	0.0128952	0.00543034	0.237441	0.000267225	18.2	40.8964	31.5685	27.1641	30.9095	32.1738	40.5805	55.0784	44.6452	47.9481	13.9745	11.6842	45.9803	51.9393	52.7915	58.7014	0.000120284	0.0001839	22.6312	22.8449	59.8284	59.4363
Blast
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BLAST of TCONS_00053553 vs. Swiss-Prot (Human)
Match: DDX4 (Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens GN=DDX4 PE=1 SV=2)

HSP 1 Score: 500.745 bits (1288), Expect = 9.471e-162
Identity = 253/457 (55.36%), Postives = 335/457 (73.30%), Query Frame = 2 
Query:  476 VTYVPPEPSEAEEEIFQTIAQGINFDQYDNIPVEITGPGEMPTAVRSFEEAGLAPGVLENIKKAKYTKPTPVQKYALPAVLAKRDLMACAQTGSGKTAAFLLPVLTGILEHRDEFTSQLSEVQAPIALVIAPTRELATQIFNEARKFSHGTSIRPVVVYGGVSVAHQLRQVEAGCHLLIGTPGRLKDFMGRRKITLENLKYLVLDEADRMLDMGFMPDVKTIVSDFNMPEKEERHTLMFSATFPEQIQKLASDFL-NQYVFITIGKIGSTHSGIEQKVVEIEDSGKRDRLVDILGNEGTNRNLVFVQTKRLADFLASYLCQNGFPTTSIHGDRYQQQREEALREFKRGEQTVLIATQVAARGLDIADVKQVINYDLPDEIEEYIHRIGRTGRIGNKGKAISFFTRGKDDGLARALVKTLADAEQEVPDWLEEVAETALGTGY--GPKGGRFASKDTR 1837
            VTY+PP P E E+ IF     GINFD+YD I VE++G  + P A+ +FEEA L   +  NI KA YTK TPVQKY++P +LA RDLMACAQTGSGKTAAFLLP+L  ++ H     S+  E+Q P  +++APTREL  QI+ EARKFS GT +R VV+YGG  + H +RQ+  GC++L  TPGRL D +G+ KI L+ +KYLVLDEADRMLDMGF P++K ++S   MP KE+R TLMFSATFPE+IQ+LA++FL + Y+F+ +G++G     ++Q V+++    KR++LV+IL N G  R +VFV+TK+ ADF+A++LCQ    TTSIHGDR Q++RE+AL +F+ G+  VL+AT VAARGLDI +V+ VIN+DLP  I+EY+HRIGRTGR GN G+AISFF    D+ LA+ LVK L DA+Q+VP WLEE+A +    G+    +G  FAS DTR
Sbjct:  244 VTYIPPPPPEDEDSIFAHYQTGINFDKYDTILVEVSGH-DAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMM-HDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVDTR 698
The following BLAST results are available for this feature:
BLAST of TCONS_00053553 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX49.471e-16255.36Probable ATP-dependent RNA helicase DDX4 OS=Homo s... [more]
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