TCONS_00053542 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053542
Unique NameTCONS_00053542
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2502

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053542 ID=TCONS_00053542|Name=TCONS_00053542|organism=Clytia hemisphaerica|type=transcript|length=2502bp
TCAGTTTTGGGGAATCGACGAAAAACAAATGGAACCTTGCTGTTGGGAAA
CGTTTACGAAACATCGCGAAGCAGAGTCGAACTTACGAACGTTCGAGGGC
CCAGGTTTCGAGGATTTACAAGTGACAAGACGTCGTAAATATTCGAATTT
CAATTCACACGATGATGAGAGCTTCATGAAGCGTAACATGAGACAAATAT
GGGATTTGATGAATGACCCGCACTCTTCCGAATTAGCTAAGcgtTTTTCA
TTGCTCTCATGTGGCATGATTATAATCTCATTATCAGTCTATTGTTTGTT
AACAATGAGGTCGTTAAGAGAAGATTCCATCTTGAAATGGATTAATAAAA
TATGCTTGGTATTCTTTACTATCGAGTTTATCCTTCGAGTGATCGTTTGT
CCACGAAAGATACAATTCATCAAAGATTACAAGAATTGGATAGACTTTCT
CTCACTAATACCTTCCTTCCTTATGATTGCTTTTCCTGGAAGTAATTGGA
TATATAATTTGGTCATCATTCGATTACTTCGTGTTTTCAAATTCTTCAAA
CTTTCGTATGGGCTACAGGTACTGTTACATACGTTAAAGGCTAGTTCGTA
CGAGCTGACATTACTCCTGCTGGTTCTCTTAATTCCTTTGGTAGTCTTCA
GTAGTTTGGTATACGCTTTCGAGTTCAATATGACTGATGGCGAAACTGAT
TTTGATTCCATTCCCAAGACCTTCTGGTGGACCATTGTAACCATGACGAC
CGTCGGTTACGGCGACATGGCGCCTAAGACGTGGATCGGTCAAGTCGTAG
GGTCCATATGCGCTATTATAAGTGTATTGATTATTGCATTACCTATATCC
GTTATAGGTAACAATTTTAACTTGTATTACGCCCATGTCAGGGCGCGATT
GAAATTACCGAAGAAAAACCGCCATTTGTTGCAAGGGCGTTTAAGGGGAT
TGCTTAAACAGCCTGCTATGTTATCTTCACGTGACCGAGATCGAAAGAAT
ATTACGAGACGAAATGGTGGCAATAGTTTGAGTATGCCACCCGCTGGAAA
TGGCCGACTGACTGTAGACACCCTCTCCCCATCACCCAACTTTATGTTGA
AAAGACGGGGTGCAGCTCAAACAACAAGTCAAATCTCTTTAAGTTCCTCT
AACGAAAGTATAGCGAATGACgaaaaacaagaaactttcgTCAAAATTGA
TTCTAACTCGCCGAAAACGAGTACCGACGAATCAACACCGATGATAAACG
AAAGACGCTCACGACAATGTTCGTTGGAAGTGAATCACGTGACAAAAGAA
AACGACCGACGTTCGCCAAACACTCGTCGACGAAGATTGAACACACAAGA
AGAAGCACATAATCATTTCCCGGTAAACGGTCGCGGATCAGAAGTCGGGA
TTCGGTATTCAACCGAAGATATTAACGACAATTTATCGGGTAGTTCAGAC
TCGATAATTTTACCATCCGTGAGCCTTACAAAAGAAGaacttgaaaatca
ttttaaaaacgcATACAGCCAAAATAACGAAAATGTCACCGAAAGTGGAG
ACGAGAACGACGACCAATTCTCGTTATCACCGACAAAGAATTTACTACAT
ATTGTCGGTAATAATGATGAACCGAATATAAGACGAGAATCTATGAAACG
TATGACGACAGTTGATTATAACCAGAATACAAAAAACACGAAAGAAAGAC
TAAGATCCAATACTCTCAACTCTGATGATATGAATCATAAAGAGAAACTC
CGAAAGCAAAATACGATAGCTAGTTCCAGCCCCGGAGGTTTATTACGCAA
AATCAGCTCTCCGcctttgtttttaaatcatCTTTTGGGGAATGGAGATG
GTGGGGCCGAGCGGCGAAAAAATAGCCTGGACCGTgataaaatacaaagg
agttccTCTAAAGAGCTCAACGGTGAAAAGCCTGCACAAAACAATGTAAA
TCATAATTCATTAGAAGACCACATGGATGGAGAGAAACTTCACTCAAAGA
ACACAGGAACTGAAAACTGCATCCCTGCCAGCAGACCATACAAAAGACCT
CTACAAAGGAGTGCAACAGATCACAACTTTTACGTCGATCAAAATCATCG
GGACGGAGATCAAAAACAccatttgccaaattttagcTTGAGCATTGATA
ATATCTCCTTGAATAAATACAAACTGACTGATGAGGAGAGAAAAATGTTG
CTAAGGGAATCTGGAGTTTGAAAtcttaatttttattatttcgttcttat
ataatttctaattaattaatttacTTCCAATTTACAGACCTGCTGTTGAA
ACACTCTAAATCGAGATTTTTTACACTGTGTTTATAAGTGATTGAGGCTA
CTATTATACCAAATCGCAGGGTTTATAGGAGTTTAAAGGGTAaccaaaaa
aaaacgttttcagCATTTAACCTTTTTTTGTCAACATTTTCATAACATTT
TTCTAACTTTAGCTTTCATTTCACATACACTTTGAAATTCATTAAAGTTT
AG
Run BLAST on NCBI

transcript from alignment at scaffold_233:331060..340799+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053542 ID=TCONS_00053542|Name=TCONS_00053542|organism=Clytia hemisphaerica|type=transcript|length=9740bp|location=Sequence derived from alignment at scaffold_233:331060..340799+ (Clytia hemisphaerica)
TCAGTTTTGGGGAATCGACGAAAAACAAATGGAACCTTGCTGTTGGGAAA
CGTTTACGAAACATCGCGAAGCAGAGGTGAGAATACTtgtttctgattgg
ttgattgtAGGGAGAAGAGGGTTCTGATTGGTTAATTGGAAGGAATAAAG
AgctctgattggttgattgtAGGGAAAAGAGGGTTCTGATTGGTTAATTG
GAAGGAATAGAGAGCTCTGATTGGATGATTTGAAGGAATAGAGAGCTCTG
ATTGGATGATTTGAAGGAATAGAGAGCTCTGATTGGATGATTAGAGGGTA
TAGAGGGCGGTAGAGTTTAGGTAAATTTGGTTATGAGAAATCGACGAAAA
ACAAATGTAACCTTGAGGTTTGGAAACGTTCACAATTATCGCTTGCAAAG
CAGAGGGGAAATAGTtgtttctgattggttgattggaGGGAATCAATAGA
GGACTCTCATTGGCTTAGTTTGGTTAAATTTCAGTGAGAATACTTGTTAA
GCGTTTGTAAGACAGCCAGCTCGTAGAATCATTTGCTTGGTTCATGCtat
tagaaaaataattttaggtgATTTTTAAACAGAGTAGAAGAACACCACAg
agtaaaaaacttttcaaattcctAAACATTCTCTTTCATTTCTTAGTTAA
TTCTATGAACATTCAATAAACCATGTTTtcgaagatttaaaaaattcatg
tcTAGCTTTTTAACTTTCTCCACAGTTCTCCATTAATTTCTAGTCGAACT
TACGAAAATTCGTTTGAATAGGACTCGCAAGAATTTCATATCTAATTTCT
TATAATTTTCTCTTTCATTAATAGTCGAACTTACGAACGTTCGAGGGCCC
AGGTTTCGAGGATTTACAAGTGACAAGACGTCGTAAATATTCGAATTTCA
ATTCACACGATGATGAGAGCTTCATGAAGCGTAACATGAGACAAATATGG
GATTTGATGAATGACCCGCACTCTTCCGAATTAGCTAAGGTAGGTGTTCT
AATCTCACCCAAtaaccttttcgaccgtagccgccaattgccgcgcgagc
atttttttgtccgctttatcccactaaccCACTaacccactaaaaccgtc
ccagtccttttttcgcacttataggcaatagaaaaaagtatcaaaaaagg
attggatcgagtttaggggataattaaataattaagtggcaagcctgacc
gcgcgactacggtcgaaaaggtgtattatgaCGTAATGCTTTCAAGAATG
AGACAAATATGTTATTGGGCTGGCACAATAACATCTTTCGATTTTTAACG
GCCTGGTAGTCTATTGCGGGGTCCTGTGGTAAATTtacaaggaaaaaaaa
attgtctatGAGAATGTTAACTACCAATGATATTCGTTACGTAATGTTTT
ACAGAAAACATCCAAGTTTTTACAAGCAAGGTGGCAAATTTTAAACCATT
ATTCTATagcttaaatttgccactactggcaaaaaatGTTAACATTAAAA
TATTAACGAAAAAAatcatctttctttttttttcagcgtTTTTCATTGCT
CTCATGTGGCATGATTATAATCTCATTATCAGTCTATTGTTTGTTAACAA
TGAGGTCGTTAAGAGAAGATTCCATCTTGAAATGGATTAATAAAATATGC
TTGGTATTCTTTACTATCGAGGTGAGTCAACAACTAGTCTAGCTCAAGTg
atataggccatttcacagtcaaAATGGATCGTGAtcatcaggactgattg
cgcctccataaaCTTtagaccaatagtaagtcgtcattagcatattttta
ttttaagaagtaGACCAAATTTTTAGTCTACATTTTTTTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GTTTATAAATATAACTTGAAGTGTTTGTCTCTGAGGTTGGATTTGGAAAG
GAACTGCTCGCTTAGGTGCTTCCATGTGTTGCCTCGGAGAGCCTGGTTTT
TATCCGCTTTTCATAATCagtgatttgattggttaaatttTAGATGTGCG
ATATGATTGGCTGAAATAATGGTTAGGGGAGATGGTTTCTATTGTGTATG
AGGCTGCAAGGCTTGTGATTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGTTTATAAATATAACTTGAAGTGTTTGTCTCTGAGGTTGGATTTGG
AAAGGAACTGCTCGCTTAGGTGCTTCCATGTGTTGCCTCGGAGAGCCTGG
TTTTTATCCGCTTTTCATAATCagtgatttgattggttaaatttTAAATG
TGCGATATGATTGGCTGAAATAATGGTTAGGGGAGATGGTTTCTATTGTG
TATTAAGCTGCAAGGCTTGTGATTGGTTTGTATATCGTGACTGAGTATTC
ATTGGCTgggttatttttttaaaaaaatttttcaaaaaatatcttttgtG
TCCGTGGTTTTGATGTTCCTTAGTTACCTCCCAGGTCGTTTTCGTTGGCT
TTTGTGTGACGGAAAAGAGTAGGATAGAGTGTATTCTTTAGGGAAAAATG
TTTACGGGGGGGGCGGAAAATCTATTCTAAAGGGTGAAAATTATCcgaaa
atttcttaaaatatctTCCACCCCCACGGCTCCCTCTGAAAAGGCCTGAT
AGGTTCAAGTTCTCTCTTTGGTCTGCAGACCATGTTTGAGGAGCATCAAG
TGTTATAGATATGTTTagtatattgaaaattttcttttagtaTTATTGAA
ATATCTACAAAATATGTATATATACATGTCTATGtttctaaaatttaaat
ttgtgaGTGGAATGTCATTTCTCATGATAGCGTGTACGGATTAGaatgtt
tttcatatttctatGTCTTTTGTATACGATGTAGGGTTTGGTTGGGAAGA
CGCCTTTAAGTTCTGCATCATTTTGAATTAAGTGCCAGTGTCTATTTAGT
ATTAATTTCAAAGGAGAAAGATGCTCATAGAATTCTGTAATGAAAGGTAA
TGAATCCTTCCTTTGTCTGAAGTTATTGTTATGTTTTATCCTTTTCTTTC
TCCCATAGAGACAATCATCCTGGGTTATGTTATTTAGTTTCTTGAAGTTT
CGATTAATCAGTGGGAGGGGGTAACCTCTCCTTAATAGGGTGACCCCGAG
TTCGTTTAATTCGTTCTTTAGGATTTTGTTGTCGGTAGTGAGTAGTCGAT
ATCTTAGTGCTTGTGTGTAGATGACATTTTCTTTGGTGTGGTTTGGGTGG
TACGAGGAGTAGTGTAGAAGTGACTTTGTATCAGTTGGTTTTGTGTAAAC
TTTGCtcttgaaacttttttcaaggTCATCGATATATATAGTTGTATCCA
GGAAGTTGATTTCTTTGGGTGAGTATTCCATTGTAAATTTTATTGTTGGG
TGGAGGGAATTTATGTAAATTTCGAAGTCCTTTAATGTTTGAATGCTTCC
ACTCCAAAGGATAAAGNGACCCCGAGTTCGTTTAATTCGTTTTTTAGGAT
TTTGTCGTCGGTAGTGAGTAGTCGATATCTTAGTGCTTGTGTGTAGATGA
CATTTTCTTTGGTGTGGTTTGGGTGGTACGAGGAGTAGTGTAGAAGTGAC
TTTGTATCAGTTGGTTTTGTGTAAACTTTGCtcttgaaacttttttcaag
gTCATCGATATATATAGTTGTATCCAGGAAGTTGATTTCTTTGGGTGAGT
ATTCCATTGTAAATTTTATTGTTGGGTGGAGGGAATTTATGTAAATTTCG
AAGTCCTTTAATGTTTGAATGCTTCCACTCCAAAGGATAAAGATGTCATC
CAGAAATCTTATGTATTCAAGAATGTAGTCTAGAAAGGGGTCTGTAAGTA
TCTTTTCTTCTtctaattttccaagaaaaaggGTGGCATATGGTGGTGAC
ATTTTTGTCCCCATCGCGGTTCCAAAGCGTTGCCGATAAAGTACCTCATC
AAACGTGAAGAAGTTGTTTTCTAGGACGAATTTGAAAAGTGTTTCTAGAA
TTCTATTGTTTGGTGTGTAAGGGGGCAGTGACGCTTTATATAGTTTTGTG
TAGTAGAGGCAAGCCTCGATCCCTTCTTCATGCGGTATATTCGTGTATAG
TGACTTCACGTCAATAGTTATCAAAAAGGTTGTTTTTATTGccaattgtt
tttttgaaatgattcttttcaaaaaatcttttgtatcTTTAATGTAAGAG
TTAAGTTTTGGAGTTAGTGGTTGTATACATTTTGTCAGAAACTCAGATAC
GTTCTCTGTTAGCGAGTTTACTGAGGATACAACAGGCCTTCCCGGAATTG
ctgttttatgtatttttggtaGAATGTAAAATAAGTTGATTCGTGGTTCT
TCTGGTGGTCGAAGATATTTGAAAGTATCATCATTTATATGGTAGTGATG
AAATAAAGTCTCCAGGAAGGCTGTTAAATTAGTTTGAATGTCTTTTAGGG
GGTTATTTGTAATCACTTCATAAGACGTTCTGTCATttaaatggtcaaaa
actttttctttatagtCTTTTTTGTTAAGGATGACAATGGAACCCCCTTT
GTCTgcttttttaataattattgatttgtttttgcTTAGGCGATCGAGGG
CCTTGGCTTCGTGGTATGTTAAgttttttgttaattgttttgAAGAGAGC
TTTTTAATAAATCTTTTCAAGTCTGCAAGGGTTTTGCGAAAATATGCCCT
TAGCTTTTGGTTGTCAGGCGTCGGTGCTATCCAATTTGTTTTTCGAAATA
ATAGTTTGAGTTTTTTAGGGTGTTTTCGAAAGTAGTATCTTTGAGatatt
ctattgtaaaaatctTTTACGGAAGATTCAAGGTGTCTTTTTATAGTTGC
TGGTTTTGGTGTAGGGACAAAGGTTAATCCTCTATTTAATGCGTCTTCCT
CGACTTTACGTAGTTTTAAGTTAGACAGGTTATACTGGGCTATACTTGAA
AGGGGTGTGAAACTACTAGACATGCTGTAATCAACAATTAAGAATAATTT
GCCGATTAAGAAACAGATTCGAATCAACAAAATCATGGTAGTCTTAATTT
GTCTAGtctttattttttctcattctTTAGTTTATCTATATAATGAATTG
TGGTTTGCTAATACTGTATGTTTTATTATGAGTCAACTACTACTGTACTA
CAGTTAACAAATCCTAAAATTCGAAAAGCCCCGGTAGCATAATAACCTCA
AAGCCCACGCGACCGGGGGCCAAGGAACATGACCCCCTCACTTTCTTTCC
GAATTAAAAGTTAGTCTCAAGATATTAATAATTTCATTACTAAGCAAAAT
CAGTCAGAAGGGGTCTAAATCGGAATTTTCTTCCGTTAGCGCCAACCGTT
TGAGCCTCCTTAGTCACAATATTTTTGGTCCTCTACTTTCCAGATCGTGG
CGTGTGCTCTAGTGCTTTGTACCTAAGTGTATCTCACGTATAACATAGCG
TAGCTTGGCAAtggtttttgaaatttccgGTAGTGATTAGGTCGGTCTGT
TTACAGACAAGCTCTGGAGTTAAGTAGGTAAAACAATCTAGCgcatttct
ttatctttttatatttcttCACCATAGTTTATCCTTCGAGTGATCGTTTG
TCCACGAAAGATACAATTCATCAAAGATTACAAGAATTGGATAGACTTTC
TCTCACTAATACCTTCCTTCCTTATGATTGCTTTTCCTGGAAGTAATTGG
ATATATAATTTGGTCATCATTCGATTACTTCGTGTTTTCAAATTCTTCAA
ACTTTCGTATGGGCTACAGGCgagtaactttttttataagaaccattttT
GAggctcgttgttcttataagataaaaccttttttataagaaccattttT
GAggctcgttgttcttataagataaaaccttttttataagaactatttTT
GAggctcgttgttcttataaccATAAGATAcgaccttttttataagagcc
aaTTTTAGAACACAAGTTTGTTCGAGTTaatgaaatttcgagttatggag
taggATTTATAAAGCATTATTAACTGAGGGACCATGAAATGTATTCGAGT
TATAGATAATCGAGTTAAAAAGATTCCATTGTAATATCttcttgtttcat
ttttagGTACTGTTACATACGTTAAAGGCTAGTTCGTACGAGCTGACATT
ACTCCTGCTGGTTCTCTTAATTCCTTTGGTAGTCTTCAGTAGTTTGGTAT
ACGCTTTCGAGTTCAATATGACTGATGGCGAAACTGATTTTGATTCCATT
CCCAAGACCTTCTGGTGGACCATTGTAACCATGACGACCGTCGGTTACGG
CGACATGGCGCCTAAGACGTGGATCGGTCAAGTCGTAGGGTCCATATGCG
CTATTATAAGTGTATTGATTATTGCATTACCTATATCCGTTATAGGTAAC
AATTTTAACTTGTATTACGCCCATGTCAGGGCGCGATTGAAATTACCGAA
GAAAAACCGCCATTTGTTGCAAGGGCGTTTAAGGGGATTGCTTAAACAGC
CTGCTATGTTATCTTCACGTGACCGAGATCGAAAGAATATTACGAGACGA
AATGGTGGCAATAGTTTGAGTATGCCACCCGCTGGAAATGGCCGACTGAC
TGTAGACACCCTCTCCCCATCACCCAACTTTATGTTGAAAAGACGGGGTG
CAGCTCAAACAACAAGTCAAATCTCTTTAAGTTCCTCTAACGAAAGTATA
GCGAATGACgaaaaacaagaaactttcgTCAAAATTGATTCTAACTCGCC
GAAAACGAGTACCGACGAATCAACACCGATGATAAACGAAAGACGCTCAC
GACAATGTTCGTTGGAAGTGAATCACGTGACAAAAGAAAACGACCGACGT
TCGCCAAACACTCGTCGACGAAGATTGAACACACAAGAAGAAGCACATAA
TCATTTCCCGGTAAACGGTCGCGGATCAGAAGTCGGGATTCGGTATTCAA
CCGAAGATATTAACGACAATTTATCGGGTAGTTCAGACTCGATAATTTTA
CCATCCGTGAGCCTTACAAAAGAAGaacttgaaaatcattttaaaaacgc
ATACAGCCAAAATAACGAAAATGTCACCGAAAGTGGAGACGAGAACGACG
ACCAATTCTCGTTATCACCGACAAAGAATTTACTACATATTGTCGGTAAT
AATGATGAACCGAATATAAGACGAGAATCTATGAAACGTATGACGACAGT
TGATTATAACCAGAATACAAAAAACACGAAAGAAAGACTAAGATCCAATA
CTCTCAACTCTGATGATATGAATCATAAAGAGAAACTCCGAAAGCAAAAT
ACGATAGCTAGTTCCAGCCCCGGAGGTTTATTACGCAAAATCAGCTCTCC
GcctttgtttttaaatcatCTTTTGGGGAATGGAGATGGTGGGGCCGAGC
GGCGAAAAAATAGCCTGGACCGTgataaaatacaaaggagttccTCTAAA
GAGCTCAACGGTGAAAAGCCTGCACAAAACAATGTAAATCATAATTCATT
AGAAGACCACATGGATGGAGAGAAACTTCACTCAAAGAACACAGGAACTG
AAAACTGCATCCCTGCCAGCAGACCATACAAAAGACCTCTACAAAGGAGT
GCAACAGATCACAACTTTTACGTCGATCAAAATCATCGGGACGGAGATCA
AAAACAccatttgccaaattttagcTTGAGCATTGATAATATCTCCTTGA
ATAAATACAAACTGACTGATGAGGAGAGAAAAATGTTGCTAAGGGAATCT
GGAGTTTGAAAtcttaatttttattatttcgttcttatataatttctaat
taattaatttacTTCCAATTTACAGACCTGCTGTTGAAACACTCTAAATC
GAGATTTTTTACACTGTGTTTATAAGTGATTGAGGCTACTATTATACCAA
ATCGCAGGGTTTATAGGAGTTTAAAGGGTAaccaaaaaaaaacgttttca
gCATTTAACCTTTTTTTGTCAACATTTTCATAACATTTTTCTAACTTTAG
CTTTCATTTCACATACACTTTGAAATTCATTAAAGTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033798XLOC_033798Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053542-exon-scaffold_233-1491911889:331060..331135TCONS_00053542-exon-scaffold_233-1491911889:331060..331135Clytia hemisphaericaexon
TCONS_00053542-exon-scaffold_233-1510915933:331060..331135TCONS_00053542-exon-scaffold_233-1510915933:331060..331135Clytia hemisphaericaexon
TCONS_00053542-exon-scaffold_233-1575043694:331060..331135TCONS_00053542-exon-scaffold_233-1575043694:331060..331135Clytia hemisphaericaexon
TCONS_00053542-exon-scaffold_233-1491911889:331884..332048TCONS_00053542-exon-scaffold_233-1491911889:331884..332048Clytia hemisphaericaexon
TCONS_00053542-exon-scaffold_233-1510915933:331884..332048TCONS_00053542-exon-scaffold_233-1510915933:331884..332048Clytia hemisphaericaexon
TCONS_00053542-exon-scaffold_233-1575043694:331884..332048TCONS_00053542-exon-scaffold_233-1575043694:331884..332048Clytia hemisphaericaexon
TCONS_00053542-exon-scaffold_233-1491911889:332596..332730TCONS_00053542-exon-scaffold_233-1491911889:332596..332730Clytia hemisphaericaexon
TCONS_00053542-exon-scaffold_233-1510915933:332596..332730TCONS_00053542-exon-scaffold_233-1510915933:332596..332730Clytia hemisphaericaexon
TCONS_00053542-exon-scaffold_233-1575043694:332596..332730TCONS_00053542-exon-scaffold_233-1575043694:332596..332730Clytia hemisphaericaexon
TCONS_00053542-exon-scaffold_233-1491911889:338337..338528TCONS_00053542-exon-scaffold_233-1491911889:338337..338528Clytia hemisphaericaexon
TCONS_00053542-exon-scaffold_233-1510915933:338337..338528TCONS_00053542-exon-scaffold_233-1510915933:338337..338528Clytia hemisphaericaexon
TCONS_00053542-exon-scaffold_233-1575043694:338337..338528TCONS_00053542-exon-scaffold_233-1575043694:338337..338528Clytia hemisphaericaexon
TCONS_00053542-exon-scaffold_233-1491911889:338866..340799TCONS_00053542-exon-scaffold_233-1491911889:338866..340799Clytia hemisphaericaexon
TCONS_00053542-exon-scaffold_233-1510915933:338866..340799TCONS_00053542-exon-scaffold_233-1510915933:338866..340799Clytia hemisphaericaexon
TCONS_00053542-exon-scaffold_233-1575043694:338866..340799TCONS_00053542-exon-scaffold_233-1575043694:338866..340799Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:331060..340799 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0166316	0.0301757	0	0.137112	0	0	0.497784	0.00405828	1.29499	0	0.875782	1.18746	6.07143e-08	0	0.21283	0.00761313	1.15184	0.707536	1.24948	1.37598	1.45312	0.699349	0.586026	3.22961	4.77598e-05	0	0.386647	0	0.0343459	0
Blast
[Close]
BLAST of TCONS_00053542 vs. Swiss-Prot (Human)
Match: KCNC1 (Potassium voltage-gated channel subfamily C member 1 OS=Homo sapiens GN=KCNC1 PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.841e-58
Identity = 127/356 (35.67%), Postives = 199/356 (55.90%), Query Frame = 2 
Query:    5 FWGIDEKQMEPCCWETFTKHREAESNLRTFEGP-------------------GFEDLQVTRRRKYSNFNSHDDESFMKRNMRQIWDLMNDPHSSELAKRFSLLSCGMIIISLSVYCLLT---------------------MRSLRE---DSILKWINKICLVFFTIEFILRVIVCPRKIQFIKDYKNWIDFLSLIPSFLMIAFPG------SNWIYNLVIIRLLRVFKFFKLS---YGLQVLLHTXXXXXXXXXXXXXXXXXXXXXXXXXXYAFEF-------NMTDGETDFDSIPKTFWWTIVTMTTVGYGDMAPKTWIGQVVGSICAIISVLIIALPISVIGNNFNLYYAHVRA 895
            FWGIDE  +EPCCW T+ +HR+AE  L +F G                    G ++L++T+R   S+        F +R   +IW L  DP+SS  A+  +  S   I++S++ +CL T                     +R  RE   ++ L +I  +C+V+FT EF++RVI CP K++FIK+  N IDF++++P +L +   G       + +  L ++R +R+ + FKL+    GL+VL HTL+AS+ E  LL++ L + +++F++++Y  E              T F +IP  FWW +VTMTT+GYGDM P+TW G +VG++CA+  VL IA+P+ VI NNF +YY+   A
Sbjct:   93 FWGIDETDVEPCCWMTYRQHRDAEEALDSFGGAPLDNSADDADADGPGDSGDGEDELEMTKRLALSDSPDGRPGGFWRRWQPRIWALFEDPYSSRYARYVAFASLFFILVSITTFCLETHERFNPIVNKTEIENVRNGTQVRYYREAETEAFLTYIEGVCVVWFTFEFLMRVIFCPNKVEFIKNSLNIIDFVAILPFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERIGAQPNDPSASEHTHFKNIPIGFWWAVVTMTTLGYGDMYPQTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMA 448
The following BLAST results are available for this feature:
BLAST of TCONS_00053542 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNC16.841e-5835.67Potassium voltage-gated channel subfamily C member... [more]
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