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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053536 ID=TCONS_00053536|Name=TCONS_00053536|organism=Clytia hemisphaerica|type=transcript|length=1523bpRun BLAST on NCBI transcript from alignment at scaffold_233:65800..126312+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053536 ID=TCONS_00053536|Name=TCONS_00053536|organism=Clytia hemisphaerica|type=transcript|length=60513bp|location=Sequence derived from alignment at scaffold_233:65800..126312+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00053536 vs. Swiss-Prot (Human)
Match: PLCL1 (Inactive phospholipase C-like protein 1 OS=Homo sapiens GN=PLCL1 PE=1 SV=3) HSP 1 Score: 206.838 bits (525), Expect = 3.757e-57 Identity = 102/268 (38.06%), Postives = 154/268 (57.46%), Query Frame = 1
Query: 550 HELSDLVNYIQAVHFHGFESASQGQQEPFKMSSIGERKFQAFAKSHGKEFSTYNKKFLTRTYPSGIRVDSSNYNPATAWAVGCQIVALNYQTPGEFMDLNDGFFKVNGASGYILKPEYLRDENINFDPEDENLDKIIQPMQVTFEIISGHFLPN---KVSGKDILDPYVVLNVYGIEQDVTTQFTTRTVSNNGFNPVFNATLQFILKAPELACFRLTVYDKDFGKDDLVAQCVYPFKSIRQGFRRIKLDTRVGESINEACILANIKLV 1344
ELSDLV+ ++V + FE S Q ++M S E + A + ++F YNKKFL+R YPS +R+DSSN NP W GCQIVA+N+QTPG MDL+ G+F NG GY+L+P +RDE F + + + P+ + +IISG P + D++DPYV + ++GI D + Q T+TV N NP+F+ T +F + PELA R V D D+ D+ + Q PF+ ++ G+R + L + VG+ + + +I +
Sbjct: 583 RELSDLVSICKSVQYRDFE-LSMKSQNYWEMCSFSETEASRIANEYPEDFVNYNKKFLSRIYPSAMRIDSSNLNPQDFWNCGCQIVAMNFQTPGPMMDLHTGWFLQNGGCGYVLRPSIMRDEVSYFSANTKGILPGVSPLALHIKIISGQNFPKPKGACAKGDVIDPYVCIEIHGIPADCSEQ-RTKTVQQNSDNPIFDETFEFQVNLPELAMIRFVVLDDDYIGDEFIGQYTIPFECLQPGYRHVPLRSFVGDIMEHVTLFVHIAIT 848 The following BLAST results are available for this feature:
BLAST of TCONS_00053536 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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