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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053530 ID=TCONS_00053530|Name=TCONS_00053530|organism=Clytia hemisphaerica|type=transcript|length=1184bp
AAACTAATGAGAGACCATACTGGTATAAATTGATAACATTGTACGAAATC
TCAGGTTTAATCAATATCAAGGTGTGGCTCTATAGTAACTTTACCgctaa
tatataaaaaaaatcacgaCAAATCAAAATATAGCAAAAACTAGACGAAA
TCCATTTAAAAATTCACATCAAAACATATTTAACATGTGATCCCACTTGT
TCGAGTTGAAAACTCGGCACGGAATCGCCCGGTATATCTTTAACGTTCGT
ACTTTGTTGGACACCCTTTGCTAGAAATCCATATTACATCAAAACACGTT
GTACGGGTGATCCCACTGGTTCGAGTTGGAAACTCGGTACGGAATCGCCC
GGTATATCTTTAACGTTCGTACTTTGTTGGACACCCTTTGCTAGAAATCC
ATATTACATCAAAACACGTTGTACGGGTGATCCCACTGGTTCGAGTTGGA
AACTCGGTACGGAATCGACCGGTATATCTTTAACGTTCGTACTTTGTTAG
ACACCCTTTGTTAGAAATCCATATCACATCAAAACACATTGTACGGGTGA
TCCAAGGCTCGTACTTTGTCGGACACCCAGCTATATTGAAAAAATCCATA
TCAAATCAAAACACATTTTATGGGTGATCCCACTTGTACATCTTCAACGT
TCACTGGTTCGGGTTCGAAACTCAGTACGGAATCACCCGGTATATCAATA
AGGTTTGTACTCAGTTCAATACTTTTCGAGTTCATGTCTGAAAGCTTATA
CTGTGACTCTTTTGTGTTATCACAGCAATATAATAAATGCCCTTCGGCAT
TCTGATTCTTAATAAACGTGTGAACAACATCCTTCACTGTTAATTGCCCT
TGTAAGGCGAACGACGTCTCGACTAATGGCACCTGTTCACTATTGCACTT
CTTACAGCTGTATATCGCTAAATGAATTTTTCGATACGCGTACATTACAA
TAGCGTCCTCATTTAACGGTTTAAGCTGGTATAATAATGTTCTCTCTCGT
TNATAGCGTCCTCATTTGACGATTTAAGCTGGTATAATAATATTCTTTTT
CGTATGTATAAAAGTTCATTGTATGGTTGGGATGAAGTGTATAAGGATAT
TGGTAAAGAGATTTCTTCTGTTAATGTTTTTTCAACGTCCTTGATCGATG
AAGTTTCGGGCATAGAGATTTCCGTAGGTATCCC Run BLAST on NCBI transcript from alignment at scaffold_233:38907..40274+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053530 ID=TCONS_00053530|Name=TCONS_00053530|organism=Clytia hemisphaerica|type=transcript|length=1368bp|location=Sequence derived from alignment at scaffold_233:38907..40274+ (Clytia hemisphaerica)
AAACTAATGAGAGACCATACTGGTATAAATTGATAACATTGTACGAAATC
TCAGGTTTAATCAATATCAAGGTGTGGCTCTATAGTAACTTTACCgctaa
tatataaaaaaaatcacgaCAAATCAAAATATAGCAAAAACTAGACGAAA
TCCATTTAAAAATTCACATCAAAACATATTTAACATGTGATCCCACTTGT
TCGAGTTGAAAACTCGGCACGGAATCGCCCGGTATATCTTTAACGTTCGT
ACTTTGTTGGACACCCTTTGCTAGAAATCCATATTACATCAAAACACGTT
GTACGGGTGATCCCACTGGTTCGAGTTGGAAACTCGGTACGGAATCGCCC
GGTATATCTTTAACGTTCGTACTTTGTTGGACACCCTTTGCTAGAAATCC
ATATTACATCAAAACACGTTGTACGGGTGATCCCACTGGTTCGAGTTGGA
AACTCGGTACGGAATCGACCGGTATATCTTTAACGTTCGTACTTTGTTAG
ACACCCTTTGTTAGAAATCCATATCACATCAAAACACGTTGTACGGGTGA
TCCCACTGGTTCGAGTTGTAAACTCGGTACGGAATCGCCCGGTTTATCTT
TAACGTTCGTACTTTGTTGGACACCCAgccatattgaaaaaaaaatccat
gtCACATCAAAACACATTGTACGGGTGATCCAAGGCTCGTACTTTGTCGG
ACACCCAGCTATATTGAAAAAATCCATATCAAATCAAAACACATTTTATG
GGTGATCCCACTTGTACATCTTCAACGTTCACTGGTTCGGGTTCGAAACT
CAGTACGGAATCACCCGGTATATCAATAAGGTTCGTACTCAGTTTGATAC
TTTCNTCAGTACGGAGTCACCCGGTATATCAATAAGGTTTGTACTCAGTT
CAATACTTTTCGAGTTCATGTCTGAAAGCTTATACTGTGACTCTTTTGTG
TTATCACAGCAATATAATAAATGCCCTTCGGCATTCTGATTCTTAATAAA
CGTGTGAACAACATCCTTCACTGTTAATTGCCCTTGTAAGGCGAACGACG
TCTCGACTAATGGCACCTGTTCACTATTGCACTTCTTACAGCTGTATATC
GCTAAATGAATTTTTCGATACGCGTACATTACAATAGCGTCCTCATTTAA
CGGTTTAAGCTGGTATAATAATGTTCTCTCTCGTTNATAGCGTCCTCATT
TGACGATTTAAGCTGGTATAATAATATTCTTTTTCGTATGTATAAAAGTT
CATTGTATGGTTGGGATGAAGTGTATAAGGATATTGGTAAAGAGATTTCT
TCTGTTAATGTTTTTTCAACGTCCTTGATCGATGAAGTTTCGGGCATAGA
GATTTCCGTAGGTATCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053530-exon-scaffold_233-1491911889:38907..39433 | TCONS_00053530-exon-scaffold_233-1491911889:38907..39433 | Clytia hemisphaerica | exon |
| TCONS_00053530-exon-scaffold_233-1510915933:38907..39433 | TCONS_00053530-exon-scaffold_233-1510915933:38907..39433 | Clytia hemisphaerica | exon |
| TCONS_00053530-exon-scaffold_233-1575043694:38907..39433 | TCONS_00053530-exon-scaffold_233-1575043694:38907..39433 | Clytia hemisphaerica | exon |
| TCONS_00053530-exon-scaffold_233-1491911889:39562..39736 | TCONS_00053530-exon-scaffold_233-1491911889:39562..39736 | Clytia hemisphaerica | exon |
| TCONS_00053530-exon-scaffold_233-1510915933:39562..39736 | TCONS_00053530-exon-scaffold_233-1510915933:39562..39736 | Clytia hemisphaerica | exon |
| TCONS_00053530-exon-scaffold_233-1575043694:39562..39736 | TCONS_00053530-exon-scaffold_233-1575043694:39562..39736 | Clytia hemisphaerica | exon |
| TCONS_00053530-exon-scaffold_233-1491911889:39793..40274 | TCONS_00053530-exon-scaffold_233-1491911889:39793..40274 | Clytia hemisphaerica | exon |
| TCONS_00053530-exon-scaffold_233-1510915933:39793..40274 | TCONS_00053530-exon-scaffold_233-1510915933:39793..40274 | Clytia hemisphaerica | exon |
| TCONS_00053530-exon-scaffold_233-1575043694:39793..40274 | TCONS_00053530-exon-scaffold_233-1575043694:39793..40274 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:38907..40274 + |
Blast
The following BLAST results are available for this feature:
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