TCONS_00053480 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053480
Unique NameTCONS_00053480
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length701

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053480 ID=TCONS_00053480|Name=TCONS_00053480|organism=Clytia hemisphaerica|type=transcript|length=701bp
ctagcctattaaATTGTTCGTCcttcgtcgtgattatcctggtatggtTA
ACCTCAGTATTAACGGAAAATACACACTGACAGTGCATCTATTCATTCAG
GGGGTCATGTACAGTATATCAAAGCATTATTTTATACTAGAAATTTAAAT
GTCGggaaaatttagaataattaGTTTCCAAGGTAAGATTTATTTATTGG
CCCAGCAGCGCAGCGTAGTGGGCCTTTCATCTGCACAGTGCCCGTACGTT
TGTTAGTTACGCAAAGCAATTAGGCGGTGTTCCGCGAGAGTACATATATT
TTCCAGGCTAAACTCAGCGCTATAATGTAAAGGGATCGACAGGGATCGTC
ATTGTCAATGTTGTCTGTCGGCTAGCATACAATTATCTATCCTCTAGCAA
AGCCGAGCAAAGCCATATGTTGATATATGGCTGAAGACCGTATCTTGTTA
TTGACTGTATTTCGTATAGTCTACCACCTACATAGACTATCTTCAACTCA
ACGTGGAGTGTTCAACGTGAGCCCTTTTTCTCTCAAAGACTGAGAAGTAA
AGAGGATAAATCAAGATTTTGCTGTCACTGACTGCTGCTGCCATTCATAA
AGGTAAATCTATATTGTGTGCTCCAGTAGTATCATAAGAATATTGGCCTT
TTGCAACAAGACACTCTGGGAAATACAAAAAATCTGCAAGGTTAATTCTC
A
Run BLAST on NCBI

transcript from alignment at scaffold_231:2233..2933

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053480 ID=TCONS_00053480|Name=TCONS_00053480|organism=Clytia hemisphaerica|type=transcript|length=701bp|location=Sequence derived from alignment at scaffold_231:2233..2933 (Clytia hemisphaerica)
TGAGAATTAACCTTGCAGATTTTTTGTATTTCCCAGAGTGTCTTGTTGCA
AAAGGCCAATATTCTTATGATACTACTGGAGCACACAATATAGATTTACC
TTTATGAATGGCAGCAGCAGTCAGTGACAGCAAAATCTTGATTTATCCTC
TTTACTTCTCAGTCTTTGAGAGAAAAAGGGCTCACGTTGAACACTCCACG
TTGAGTTGAAGATAGTCTATGTAGGTGGTAGACTATACGAAATACAGTCA
ATAACAAGATACGGTCTTCAGCCATATATCAACATATGGCTTTGCTCGGC
TTTGCTAGAGGATAGATAATTGTATGCTAGCCGACAGACAACATTGACAA
TGACGATCCCTGTCGATCCCTTTACATTATAGCGCTGAGTTTAGCCTGGA
AAATATATGTACTCTCGCGGAACACCGCCTAATTGCTTTGCGTAACTAAC
AAACGTACGGGCACTGTGCAGATGAAAGGCCCACTACGCTGCGCTGCTGG
GCCAATAAATAAATCTTACCTTGGAAACtaattattctaaattttccCGA
CATTTAAATTTCTAGTATAAAATAATGCTTTGATATACTGTACATGACCC
CCTGAATGAATAGATGCACTGTCAGTGTGTATTTTCCGTTAATACTGAGG
TTAaccataccaggataatcacgacgaagGACGAACAATttaataggcta
g
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033756XLOC_033756Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053480-exon-scaffold_231-1491911889:2233..2933TCONS_00053480-exon-scaffold_231-1491911889:2233..2933Clytia hemisphaericaexon
TCONS_00053480-exon-scaffold_231-1510915933:2233..2933TCONS_00053480-exon-scaffold_231-1510915933:2233..2933Clytia hemisphaericaexon
TCONS_00053480-exon-scaffold_231-1575043694:2233..2933TCONS_00053480-exon-scaffold_231-1575043694:2233..2933Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_231supercontigscaffold_231:2233..2933 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.70584	1.55546	1.39685	1.49118	1.13854	1.00071	1.01782	0.964102	1.12384	1.18598	0.376732	0.355753	0.8098	0.724496	0.351768	0.5908	0.474747	0.533329	0	0.802126	0.589781	1.0558	0.714096	0.474479	0.852691	0.446949	0.527731	0.342708	0.273196	0.647802
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053480 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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