|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053468 ID=TCONS_00053468|Name=TCONS_00053468|organism=Clytia hemisphaerica|type=transcript|length=924bp
AGATgacaaattacaaaaattataaGAATAACAAAAGTGATAAACTTAGA
TGTATAAACCTCTAAAGGTTGGTACCAGTATGCCGTAGATGGCCAAAAGC
AGAAGGAAAATTGGAAATAGTTAGGTTTTTCAGAGGAAGAATGTCTTGTT
TGATTAGAAATAGTTTGGTTTTTCAGAGGAAGAATGTCCTGTTTGAAGGA
AACCAAATGACCACTTGACAAAAATGTCGGAGGTAATTCAATCGTTGCTG
CTGCACTGGATTCGGTATGAACTGGAAGAAGATAAAGAAGAAgGGTCAAA
TTCGCTAAACATGGCACCATAAAAGATGGAAGACAAAATAAATGCACATG
gGGTGGATTTTGATTTGGTTATGGACGCGTAATCTTTGGATAGTTTTCGC
CTCCAAAATTCTCATGATATGACCATATTTTCTCATATTATCTTCAAACT
TGACCCGCCTTCTTTTTGTTTCTTGAGCCATTTGCTTTGTGCGATCAAAT
GATCGTTTCTTTTGTGTGTGATTAGTAGAATAGGATTTGATCTTTGCCTG
AATCTTGATGGTGttcttttctttcaaatatttggggaaagtttcaaaat
gagaagggacaagTGGGAAGGGCGTAAAATGTAAAAGTGTTCATAGGAAA
TGTAAACATCACgggtgattttttttcactgattAATCAATCCTATTTGa
ttgtaaaagtaaaaaaagaaatcagttttgatgataaaatatttcaaggg
AAAAAGAAGATGATATTTACAATATTGTCTCATTACCTCACCTATCATCA
ATTTGTGCGCGTCCTTTTCTCCCctcgtttttattttgtaaaatcttcaa
aatctttttatatTTCATCAAGGTCTTTTGTTTGGGAAGGCGTTGTTTTT
CTAATCAATATCAGTAAGCCCAAC Run BLAST on NCBI transcript from alignment at scaffold_231:269690..278635- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053468 ID=TCONS_00053468|Name=TCONS_00053468|organism=Clytia hemisphaerica|type=transcript|length=8946bp|location=Sequence derived from alignment at scaffold_231:269690..278635- (Clytia hemisphaerica)
AGATGACAAATTACAAAAATTATAAGAATAACAAAAGTGATAAACTTAGA
TGTATAAACCTCTAAAGGTTGGTACCAGTATGCCGTAGATGGCCAAAAGC
AGAAGGAAAATTGGAAATAGTTAGGTTTTTCAGAGGAAGAATGTCTTGTT
TGATTAGAAATAGTTTGGTTTTTCAGAGGAAGAATGTCCTGTTTGAAGGA
AACCAAATGACCAGTAAGTGCTTACATTGTTAAAAATTCTTACTTTTTTA
ATGACCAATAGAAACTGATTATAAGAGATATTTTTCCAAATACATACAGT
ATATGGCCCCCAAAACGGAGGTCGTCATTAAAATGAAGATTCTGACTTGT
AGATTTATCAGAATTAAACGATTTTTGTTTATTTTGAAACAATGATGGTT
ATACTTAAAAATGAGCATGCTTTTGCTGGTTTGAGACATATTCAAAATAA
CATATTTGCGTCTAAAGGAAATATTTTAACACCAAAATTATATAAAAATT
GCATATAACTCACTCTAGCTCCTTGGATATTGAAAATAAGTTATGAAAAC
GGGGTATAGGAAACTTTCTACACCTAATGCCGNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTTTAGAGGCTGGGTAAA
AGATATAGCATCTTGAAGGTCAACCAGTATTTTGGAGCCCTAGAATCAGC
ATTGACAAAACCGAAAATTCTAAATATGAGAGAAAGCAAAAAGTCTTGGA
ATTCTATTCCTATCACCTTGAGTTAATAGTTTATGACAGAAAATTAACAT
TATATATGTAATCGTCAGCCGTGCAAAATTACTCGAATCTGATTGGTTTA
GAGGAGTGCAATTAATCGTTAATTGCACTATTACCACTTTTTGCACTCTT
CGGCGGGGGGACACTTTTGTCCCCTTATTCTTTTCTCTCCAAAGTCCTGT
GTCAGAGACTTTTTTTACTATATAATAAAAAACAAAGACATTTTTTTTCT
TCAATATAAAAAAGAACAAAGAAATTTTACGTTACAATGGCTTCTTTTAA
TTGAAAACAAAGAAAAATTACACTGCAATGTTTTCTTTTTAAACAAAAGA
AAAAAAGGAGGTTTTCGAATGTTTACAAAAAAAAAAGTTAGAAAAAGATT
CTTGTTCAAAACTTTTTACTGACGATTACCTCGGAATCGTATGTTTTGTC
GTGCAATTAACGATTAATCACTCGTAACAAAGGAGAAAATACCGTAATTT
GCACTCGTCCTTCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTTACTAGTACTAATCGTCAGCCGTGCAAAATTACTCGAATCT
GATTGGTTTAGAGGAGTGCGATTAATCGTTAATTGCACTATTACCACTTT
TTGCACTCCGCGGCGGGGGGAACTATTTTCAAAAGAGATTCGTTTTCAAA
AACTTGATTAAGACGTTGTTAAAGCAAAATTGTCATTTTGAAAATTTCTA
AATTTTCAGTTTGGACTTTGCAATATCGAAAATCTTGAAATATTTCATAA
AAATCATAAATTTTACATCCATTGGGTCGTAAATTTAAGGGAAAACACAA
ATATGTTCATAGTTTTCACCCCTTTTACCAGTGGGCTTAATAATTTGATT
TTAACTACACCTCCGTTTTGGGGGCCCCAAACCTGCATTTTGACAACCAG
GGGCATACTGTAAAAATTTTATCANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTAGATGTTAAAGGTTTTCATGCAGCAAAAATTTTTGTAA
AATCTCTTTTTCTCTAGATTTGAGAGAAATTTCAAATTTGATTGCCGTTT
TGGGGGCCACATACTGTAGGGTCCTCCAAAAAAAAAAATTAGGTACTCCC
AATCATTTTGGTACCCCAAAATTTTTAGAATTCTAAAGTTACCCCCAATT
TTGAGTTACCCCCTTTTTAATTTTTTTATTGTTAAAAATACAAAAAGGGA
TTTTTTGCTCTTTTGTTATAATTCCTCGGAAAATACTTATATGGCGGCCA
GCACTTCTTTTTCAACAACTTCAAGGGTGTCATTTTTGACTATAATTTTC
CAGGGTTTCAAGAGATTTTTATATACCACAAACTTTCAAGGGTTTCTAGG
GTTTTTGGTTGATCTTTGCTAGTTTTCAAAGATTTCAAGGAAATCTGTCG
ACAAAAGGAGAAAGGTTGAATTTTCAATTTTTGGGTAAAGGAGGGTCCTT
AAATTGTCTGATAATTGATAATTTTACAAACACCCATTCTATCACCCAGA
CCTGCCAATCTCATATAATTCCAGTGGCACTTAACGGGTTAAAAGGTAAA
CCCCCTAAGAATGAGTGTGGAATATCCCCTTGAGTCTCAGGGGTTCCAAA
AGTATGTTTTCTCATTTTTAAGTCACTGCGATGTTTGTATCATACGCAAT
GGGAAAGATTTTGTATTTCTGAAAGTTAAGATGGCTGAAAATGGCCACAA
AATTTGGCATTTCAAGGGTTTCAAGGGTATAAATCTTGCATTTCAAGGGT
CCTCAAAATAATATTGACTTTTCAAGGGTGTTTCAAGGGTTTCAAGGAAT
TCAAGGGTGATGACTTCATACAGGTACCCCCAAATCTCTGGGGGGGGGGG
GGGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGGGGGGGGGGGTGGATCCTATGAAATATTTTATATTCTGTCCGACATAG
CTATAACCTTTAAGTTTTTAGATCAATGTATTTGCTTCACATGACTTTTA
GGCTAAGAAAGTGACCAAATTTCAAAAAAATGACCACATCCAATCGTCAA
CAAAGTTCTGTTTCCTAGTTAATCGATTTGAAAGTTTTACCTGTGGCACA
TTTTTCTTCAATTCTCGGCTTTGATAAAAATTTTTTGGACAAAATCCGAT
ATTTGCAACACCCTATAAAATTCTTTCTTGCAAGTTTATCAAAGACGAAT
TTCCCAATTTCATATTTTAGTGACCCTGTGAGAAACATCCACAATAGGAA
AATTAAGACTTCATCAGCTATGACAAAAAGTTGTTTTTTGGGCATTTTTC
AAAATGTCACACTATTTTTGATTGGGATCAGCCGCTGTTTTAGCGGTGGA
ACGGATGCCGAAAGGAGTATTTTATCGTTTCTTGCCTTTTGCGTCGTTAA
AATTTTGACCACCTTCAGGAACACTTTGCACTCTATTGGTTGAATTTCTG
ATTTTGAAAAGATTCTTGAGCAATTCTCGGGTCAGGCTTCCATCATCCCT
CGTTTTGTTATAAAACAACTAGTTTACTTCTCAAGATAAGATGTAGTCTG
AGAAAAATTCTAATTCGTTAGTGTGAGATCTGATATCGGCTATAAAATGC
TAAAAAGTATTAATATTGCTAATCATTAGTTTAAACTGAGAATCCCCTAA
TGCTTGTTAAGCTTCTGTGCTTTTTTCGAAATGATAATTCAAGGTTACAA
AAGTTCACTAATTGAAATATATCATACATTATCATAAATTCAGTTTCGAA
AGCTGTTAATTTTCAACTGCTGCTGTACATCACGTTAATTTACCGTTCAA
GATCTTTTTTAAAGTACGCAAGAGAAGGTTATTCTTGTTATTATACGAGT
GTTGAATTCTCGGTAGGCCATAATCAAAAGCATCGAAATCTTCTTTGTAA
TATTTGTAAATCCCTAAAATATCCTTTTCATCTAAAGTAGAGAAGAGATG
GAACATCAAATCATTCGAACTGACTTTATAGCCATCGGTCCAAGTTTTGG
GGAACTTATGAACGGAATCTACACGTCGCACCACTTCCTTTGCATCTCTC
AAAAGTGATTCCATCTTCCCGATAAAGTTATATCGGATTTGACATGGGTG
ACATAGTTTGGTTGCAGGGTACCAATGCGGGTCATATGGTTCGACCTGCA
CAATCCAGCGAACGAATTCTTGAAAAGTTGCACCGCGTCCGCGATTATAT
TCCTCTTTACTCAAATCTTTTCGAAACATTTTCAATATTCTTGACCCGTA
CGTTTTTTCAAAATAAGTATTGTTATCCGCGAACTTATTCCGGTATGCAG
ATGCTAATCTTTCAAAAGGGTGTCTTACGAACATAAACTTGAAAGAGTCT
TTTATAACTTTTGGCATCGCGTGTCCCTTGACATGATACAAGGGTCGAAG
ACCTCGTTGCGTATGAACCTTCGATTTGACACCCATTTCACTAATGTTTG
ACTTTATACCATCGAACAAAAGTAGCATTCTCTTCCAGTTCGTACTAGCG
ACTTTGGGTACGGCGCAATAGAGCACCGGTAGAACGCGACTAACGAATAT
ATGTCCCTTTTGCTCTCGCTCAAGAAACCTCTGCTGTATGAATGTTCTGA
GACTCGTACCGCCATCTTTTTTCCGTTTAGCTTGACAAAAATGTCGGAGG
TAATTCAATCGTTGCTGCTGCACTGGATTCGGTATGAACTGGAAGAAGAT
AAAGAAGAAGGTAATTTTATAATTTTCTCGATACAAGTTTTTTTATAAGA
ACATCCAGAGTCGTTGAAGCCTTCTTAACTTTTTGAGTTATAAGCCTTGA
AATGTTCTTAACATGTTCTTATTTTCACCACTTGTGAGTAGTTTTGTCTA
TTTTCCTAAGAAATCGGGTGTTTTAGAGTCTGCGAAATCAAATCCTTTTA
AAGTTAAAGTTTCTGATCTAAAGAATAATTCTTGATATTTTTTTTCGAAT
TAANAAGGTAATTTTATAATTTTCATGATACAAGTTTTTTTATAATAACA
TCCAGAGTCGTTGAAGCCTTCTTAACTTTTTGAGTTTTAAGCCTTGAAAT
GTTCTTAACATGTTCTTATTTTCACCACTTGTGAGTAGTTTTGTCTATTT
TCCTAAGAAATCGGGTGTTTTAGAGTCTGCGAAATCAAATCCTTTTAAAG
TTAAAGTTTCTGATCTAAAGAATAATTCTTGATATTTTTTTTCGAATTAA
GTAAAAAGAACAACATTTGTTAAAAATTGAAGCAGAAGCTTTTCGGTCTT
ATGCCATCATCAGTGCTATAGATAGTAAAAAAATTTTCGAAATTTCCACC
CTTTTTACAATTCATGACGTCCGATTTCGAAACGCCCAATACAGGTCTTT
TTCAGTTCTTTTGGTGTCTCTCGGTCTAGCATACTAGGAGCACTCGTGGT
CTTTCTGGCCAGGCTAGAATTTCTTGAAGGGGATATATGTTATCAGTAAA
AATAAGATGACTAAAATAATAGATTAGATAATTTTTCTTTACATTTGGAT
AGTGCTTTATGTAAAATATTTAAATAATTGAGGCCAATGTTTTTATCACA
ATTCTATTCGTTTGTTATTGTCACTTTAAAAATTTGACACTTTCAAAAAA
TAATTGATCAATCAAAACTTGTTGTCAACAATGTCATTCATAGTTTACAT
GTGGTTCGCCTCGTGCACGCGCGTGAACGAGTCATTTATTAATTTATGAT
AATTATTTGCGTGTACAAGAGGGACACGTGTTATGCTTAGAGACGTTCCT
TGATTGATTCATTTTTAAAAAAAGTTCAAAAATTTGATTAGAGAAAATTT
ACACCTTAATTAATTAGTTTTGATAGATATTAAAAAACAAAATAACAAAA
GATAGAAAGAGGGGATAAATTTTGACAGAAAAATTTTATATTCTTTACAT
ACATCACGGCTACTGTCGTCTTGAACAAGAGCTCTATTACGACTCACAAA
TCGTGTGCCAGCGGGATATAATTGAAACGCACAATACAGAATAGTAATAC
CAGTCAACAAGGAGAAAAGAAAGAGAGCTGCCCAGCTAGACATAACTCAC
TTCTTCTCTACACTATTGTTTTACCTCAATGAAATAATGCATCAAAAGTA
TCTGACACTCGATGTAAGAAAAGAGGAAATGAAAGCGAACGAAAATGAAG
AATAGCGTTACAATAGTTTCTTCACACTACCCTCTTTGTTTCACACCTTT
CAATCGATCAGCATGCCTGTGAAACTTTGAAAAAATATCAAACTCATTCA
AGTGCATCATGAATTATCAATAACGCATTAATTTTTCAAAAATCATCTTC
GAAAACATCAATTCATCAAAAATAAAGACTTCTCTTTCATATGAGCTCAT
TATTAATACATAGTTGTCCTTTTTCACCAATATTTAAAACAATGACAATA
TATAATAGTCATCTTTCTGGGGAAAGGCTTTTCTATTATTGATTTTACTT
TTGATCCCCGCGTGACAGTGTTATATTTTCAAATTTTCTAAAATGTCAAA
AATATTCGAATGACTAAAAAGTCTTTTTCAATGTCACTTTCATTTTTCTA
AAAATAAAGACCAGATTTTTCTTGAAAATGAAGAATTCGATCTCTTTAGG
CTCCATATAAACACGATTGATATTTTTCAGCCATATTTTTTTAGGGCTAT
GGCCGCCTCATTTTTTCAAATAAAAAAGTATTTTTAGAATATCCGGATTC
ATACTTTCAATAGCTTCATCTCAGGGCAAAATCAGTCCCAAATCGGACCA
TTTTAAGGTATATTAGTGGGGTCAATTTCAGTCGGCTCAAACCATGGTTG
CGCCTACTCAGTCAGTATGTTTTTGGTCATTCTACCTCCAGATCATGGCG
CGGGCCCTATATATACTCATGTACTTTGCTTCATAATCACACGATGAGTT
ATTATTTCTTATTTGGCGCGCCTTCAAAGAGAGCAATTAATCGTTAATCA
CTCTCTTCAATGACGCGCCAATGTTTACAAAATCGTGATTTTAATGTTTT
TTCTTACTTTTTTTATCGAACGATTTAATTGCATTCGAAATTAATTTTGT
GAGAAAGAAAATCTATAAACAACAATAAAAGAAAAACAATAAAAAAAATA
TAAAACTTTCAGTGTAATTTACTTTCCTAACGGGGAAAAAGTAACGAAAC
CGATCGAGCGATTAGCTCGTAAATAAATGATAACTCGTACAATTCGAAAA
TTGCACTCGTGATTTTTTGTTTCAAATTTTTAATTAATTTTTTAATTAAT
AACAAAAAAATCACTCGTGCAATTTTCTCGAATTGCACTCGTACATGTGA
TTACATATACATACCATGCTGTTCTTAGTTTTGGCACTTTGAGATCTTCG
AAGTGCGAGCTATTAAAATCCTGTTCTTATTTTAGGTCAAAACCTTAGGC
TACTAAAATGCTTGAAACTCCCATTTCTTGCTTTTCTTAATTTGATCTCA
TTTTTGGTGTTTTTAGTCTCATTCATTGTTCTTTTAAAATTGTTTTTATA
AAAAAGGAGTAATACCATATCACCACAGATTTTATCATTGTAAGCAGTAT
AATTTTCTTTACAGGGTCAAATTCGCTAAACATGGCACCATAAAAGATGG
AAGACAAAATAAATGCACATGGTTTGGACCAATTCATACTATTTCTCCTG
TTCCTATTCTTACGACTTTTGGACGATTTGAATAATTTGATTAAGCTTCT
ACTGATTTACGAATTGAGTACGGGTCTAGAGTTTCGAATTATATGGTAAT
ACAGCCAGGTGTAGAAATGGCAAAACTTTCTAGCGCACACATCACGAACA
AACCCCTGTATTATTAGTCTATTTGTGTGATTTTGTGCGTGATGGAAGTG
TTTGTCTTTTGTTTTGTCAGATGTAAGTGCTCTTCAATCAAAACTAAAGA
ATAAGAAATGATTTGAGATGAAGCAATGAATTAGTTGAAGTATATTTCCC
TTATTAGACGTTAAAACGATGTGTTTTAGACGTTAAAACGATGTGTTTTC
TTTATTTTTGTCCAAATTTTAGGGGTGGATTTTGATTTGGTTATGGACGC
GTAATCTTTGGATAGTTTTCGCCTCCAAAATTCTCATGATATGACCATAT
TTTCTCATATTATCTTCAAACTTGACCCGCCTTCTTTTTGTTTCTTGAGC
CATTTGCTTTGTGCGATCAAATGATCGTTTCTTTTGTGTGTGATTAGTAG
AATAGGATTTGATCTTTGCCTGAATCTTGATGGTGTTCTTTTCTTTCAAA
TATTTGGGGAAAGTTTCAAAATGAGAAGGGACAAGTGGGAAGGGCGTAAA
ATGTAAAAGTGTTCATAGGAAATGTAAACATCACGGGTGATTTTTTTTCA
CTGATTAATCAATCCTATTTGATTGTAAAAGTAAAAAAAGAAATCAGTTT
TGATGATAAAATATTTCAAGGGAAAAAGAAGATGATATTTACAATATTGT
CTCATTACCTCACCTATCATCAATTTGTGCGCGTCCTTTTCTCCCCTCGT
TTTTATTTTGTAAAATCTTCAAAATCTTTTTATATTTCATCAAGGTCTTT
TGTTTGGGAAGGCGTTGTTTTTCTAATCAATATCAGTAAGCCCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053468-exon-scaffold_231-1575043694:278423..278635 | TCONS_00053468-exon-scaffold_231-1575043694:278423..278635 | Clytia hemisphaerica | exon |
| TCONS_00053468-exon-scaffold_231-1575043694:273576..273655 | TCONS_00053468-exon-scaffold_231-1575043694:273576..273655 | Clytia hemisphaerica | exon |
| TCONS_00053468-exon-scaffold_231-1575043694:270665..270721 | TCONS_00053468-exon-scaffold_231-1575043694:270665..270721 | Clytia hemisphaerica | exon |
| TCONS_00053468-exon-scaffold_231-1575043694:269690..270263 | TCONS_00053468-exon-scaffold_231-1575043694:269690..270263 | Clytia hemisphaerica | exon |
| TCONS_00053468-exon-scaffold_231-1510915933:278423..278635 | TCONS_00053468-exon-scaffold_231-1510915933:278423..278635 | Clytia hemisphaerica | exon |
| TCONS_00053468-exon-scaffold_231-1510915933:273576..273655 | TCONS_00053468-exon-scaffold_231-1510915933:273576..273655 | Clytia hemisphaerica | exon |
| TCONS_00053468-exon-scaffold_231-1510915933:270665..270721 | TCONS_00053468-exon-scaffold_231-1510915933:270665..270721 | Clytia hemisphaerica | exon |
| TCONS_00053468-exon-scaffold_231-1510915933:269690..270263 | TCONS_00053468-exon-scaffold_231-1510915933:269690..270263 | Clytia hemisphaerica | exon |
| TCONS_00053468-exon-scaffold_231-1491911889:278423..278635 | TCONS_00053468-exon-scaffold_231-1491911889:278423..278635 | Clytia hemisphaerica | exon |
| TCONS_00053468-exon-scaffold_231-1491911889:273576..273655 | TCONS_00053468-exon-scaffold_231-1491911889:273576..273655 | Clytia hemisphaerica | exon |
| TCONS_00053468-exon-scaffold_231-1491911889:270665..270721 | TCONS_00053468-exon-scaffold_231-1491911889:270665..270721 | Clytia hemisphaerica | exon |
| TCONS_00053468-exon-scaffold_231-1491911889:269690..270263 | TCONS_00053468-exon-scaffold_231-1491911889:269690..270263 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_231 | supercontig | scaffold_231:269690..278635 - |
Blast
The following BLAST results are available for this feature:
|
