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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053452 ID=TCONS_00053452|Name=TCONS_00053452|organism=Clytia hemisphaerica|type=transcript|length=2626bpRun BLAST on NCBI protein sequence of TCONS_00053452-protein >TCONS_00053452-protein ID=TCONS_00053452-protein|Name=TCONS_00053452-protein|organism=Clytia hemisphaerica|type=polypeptide|length=671bp MGCASSNYQKQNIQVTPLAKKKKQDVIPNQSPYLPRNAVEPLKRVFNPDARun BLAST on NCBI transcript from alignment at scaffold_231:109269..119563- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053452 ID=TCONS_00053452|Name=TCONS_00053452|organism=Clytia hemisphaerica|type=transcript|length=10295bp|location=Sequence derived from alignment at scaffold_231:109269..119563- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_231:109269..119563- >TCONS_00053452 ID=TCONS_00053452|Name=TCONS_00053452|organism=Clytia hemisphaerica|type=CDS|length=30240bp|location=Sequence derived from alignment at scaffold_231:109269..119563- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053452 vs. Swiss-Prot (Human)
Match: PPE1 (Serine/threonine-protein phosphatase with EF-hands 1 OS=Homo sapiens GN=PPEF1 PE=1 SV=1) HSP 1 Score: 471.47 bits (1212), Expect = 3.601e-154 Identity = 269/653 (41.19%), Postives = 377/653 (57.73%), Query Frame = 1
Query: 310 DAALASSIIIQKWYRRYKARLELKRHCAWKVFQEIEYSAEHDQINLYNFFNEMVSNVEKNGNHSNKGFVNMLTKAQTSNNLLETESMAE-----VSNMVVDSSYKGPHVELPITLEKTKELLEYFKGKKRQILHPKYVKMILLEAFSRMKILPNVIEINLNICKQVTVVGDIHGKFNDFITIFNKNGLPSPENPYIFNGDFVDRGKKSLEIFLLLCCFHVLYPDHVVLNRGNHEDYIMNSRYGFTKEITNKYKGEAGHIMDLCSKVFSWLPLATLIGEKIFVCHGGISDRTDLERLRTVRRHQFSSVLKPTHVSLDDH-----------------------QPPSMEVLQEWEQIIDLLWSDPQPQLGKIFNKYRGGGCCFGPDITKLILEKYDWDLIIRSHECKFEGYEYTHDDKVLTIFXXXXXXXXXXNLGAYVKIDVNLKPRIIQFDAPKTR----MTVRVGVNEDEATQDLQRKIYSQREELLVEFKRLDQKSQGKIHVQEWTVVMEKVLQMKLPWYLLRPKLVVQDENGFILYETLFEGYRIDSMLPQLNGNGLSETIYRNKDALYTVFRIIDKDCSGFISKEEFEEACRVLNN-FNDQEDTPNSSISDLAKALDINRDGKIDFNEFLEAFRLVNHSIEEQSKSSMS 2169
D +L +++IIQ WYR YKARL+ ++H A +FQ IEY+ E Q+ L FF+ M+ N H +K + + N LE+E V ++ V SY GP ++ P+T LLE FK ++QILH YV +L E +K +PN I + K+VT+ GD+HGK +D IF KNGLPS NPY+FNGDFVDRGK S+EI ++LC ++YP+ + LNRGNHED++MN RYGFTKEI +KYK I+ + + ++WLP+ T++ +I V HGGIS+ TDL L V R++ SVL P + DH P EWEQIID+LWSDP+ + G N RGGGC FGPD+T IL KY ++IRSHECK EGYE HD KV+TIFS S+YY SN GAY+K+ PR Q+ K + RV E+ A + L+ ++ S++ +L F+ D + GK+ V +W ME +L + LPW L LV D+NG + Y + F+ RI+ + + + L ET+YR + L +F ID D SG IS EEF ++ ++ +N D +S ++ LA +D+N+DG IDFNEFL+AF +V H E+ K ++
Sbjct: 14 DTSLRAALIIQNWYRGYKARLKARQHYALTIFQSIEYADEQGQMQLSTFFSFMLENY----THIHK------EELELRNQSLESEQDMRDRWDYVDSIDVPDSYNGPRLQFPLTCTDIDLLLEAFK--EQQILHAHYVLEVLFETKKVLKQMPNFTHIQTSPSKEVTICGDLHGKLDDLFLIFYKNGLPSERNPYVFNGDFVDRGKNSIEILMILCVSFLVYPNDLHLNRGNHEDFMMNLRYGFTKEILHKYKLHGKRILQILEEFYAWLPIGTIVDNEILVIHGGISETTDLNLLHRVERNKMKSVLIPPTETNRDHDTDSKHNKVGVTFNAHGRIKTNGSPTEHLTEHEWEQIIDILWSDPRGKNGCFPNTCRGGGCYFGPDVTSKILNKYQLKMLIRSHECKPEGYEICHDGKVVTIFSASNYYEEGSNRGAYIKLCSGTTPRFFQYQVTKATCFQPLRQRVDTMENSAIKILRERVISRKSDLTRAFQLQDHRKSGKLSVSQWAFCMENILGLNLPWRSLSSNLVNIDQNGNVEYMSSFQNIRIEKPVQEAHST-LVETLYRYRSDLEIIFNAIDTDHSGLISVEEFRAMWKLFSSHYNVHID--DSQVNKLANIMDLNKDGSIDFNEFLKAFYVV-HRYEDLMKPDVT 650 The following BLAST results are available for this feature:
BLAST of TCONS_00053452 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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