TCONS_00053374 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053374
Unique NameTCONS_00053374
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1113

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053374 ID=TCONS_00053374|Name=TCONS_00053374|organism=Clytia hemisphaerica|type=transcript|length=1113bp
AGCTTTTTAGCAGAAATCTTTACTATAAGGAAATTTTATCTAATCTGATT
ATCATAAATTTcatatttatataaaaaatacaattttagaaaaaatagag
AAGTTCTTGgaaacaaacaagaaaaattgaaactgAGGAGCACTAAAAAT
TAGAACCACCTCTGAAAGAAACAAAATGACCAATTTTAAATTCAAGAcct
ttgaaatttcattttatcaTACTAGTTACTACGTTTCAACTTCTTTAAAT
ACTTAATATCAGGAAGAAAGACGAATTCCGATCCTAATACATAGGTCCCA
TTAAGCGAAAATAGTACAGTACTTTTTTTCAGTGCCCACCCTCCCTCCTT
CAAACATTGAAAGTTGGGGAAGGGTGAGCTTAGCGAGCTTTAAATTAGAT
TCATGGGATAGCAATTCTATTCACGAGTAAGTGACAGTTAAAATTATCAT
GGGTTTCATCATATTATCATAATGTGGATTGTATCCCATTGCTAACATGA
ACGTCAGATTGTCGATATTGTGAGGTAGCAGTCGTTGAAGTCCTTCTTGT
CGACGAATCACCGCCTAAAACACTTGTAAACCCGCGATGCATTCTCTGTA
TATTCGAATTATATCTGGACAATCCGAAACGTTCAAAAACAGGTTTCAAT
CCCGGGAAATAAGATTCAATCCAAGCTCGACGTTGAACACTTGTTAATTC
TTTGTTATCAGTATCTATAGAAAACACACAACGCTCTTCTACAGATAACA
AAGTATTATGGGTAATATTACGAGTATATGTTGTTATTAAATGATTCTGT
ATATCAATATGTGATTCTTCCAAGATATAAACAGTAGCCGTTGGAAGAAA
TTTCATCAACCATCCAGGTACTTCATTTGTTTTGGCAAAAATCCTTGTTG
TTTTTAGAACGTTGTTTTCATCTAAACTTCGTTTAATGACATCTTCGCCT
AATACATGTTTACTTTGTGGGTTTGGATATCGTTTGTAAAATACCGAACA
TATATCAAGCCATGTGTGATGCAATATCTGTACAGATTCGTTAAATCTCA
TCTTGCatttctatatatttttgaattattttattattctttctttttta
taagtcATTCTAA
Run BLAST on NCBI

protein sequence of TCONS_00053374-protein

>TCONS_00053374-protein ID=TCONS_00053374-protein|Name=TCONS_00053374-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
MRFNESVQILHHTWLDICSVFYKRYPNPQSKHVLGEDVIKRSLDENNVLK
TTRIFAKTNEVPGWLMKFLPTATVYILEESHIDIQNHLITTYTRNITHNT
LLSVEERCVFSIDTDNKELTSVQRRAWIESYFPGLKPVFERFGLSRYNSN
IQRMHRGFTSVLGGDSSTRRTSTTATSQYRQSDVHVSNGIQSTL
Run BLAST on NCBI

transcript from alignment at scaffold_228:534114..535226

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053374 ID=TCONS_00053374|Name=TCONS_00053374|organism=Clytia hemisphaerica|type=transcript|length=1113bp|location=Sequence derived from alignment at scaffold_228:534114..535226 (Clytia hemisphaerica)
TTAGAATgacttataaaaaagaaagaataataaaataattcaaaaatata
tagaaatGCAAGATGAGATTTAACGAATCTGTACAGATATTGCATCACAC
ATGGCTTGATATATGTTCGGTATTTTACAAACGATATCCAAACCCACAAA
GTAAACATGTATTAGGCGAAGATGTCATTAAACGAAGTTTAGATGAAAAC
AACGTTCTAAAAACAACAAGGATTTTTGCCAAAACAAATGAAGTACCTGG
ATGGTTGATGAAATTTCTTCCAACGGCTACTGTTTATATCTTGGAAGAAT
CACATATTGATATACAGAATCATTTAATAACAACATATACTCGTAATATT
ACCCATAATACTTTGTTATCTGTAGAAGAGCGTTGTGTGTTTTCTATAGA
TACTGATAACAAAGAATTAACAAGTGTTCAACGTCGAGCTTGGATTGAAT
CTTATTTCCCGGGATTGAAACCTGTTTTTGAACGTTTCGGATTGTCCAGA
TATAATTCGAATATACAGAGAATGCATCGCGGGTTTACAAGTGTTTTAGG
CGGTGATTCGTCGACAAGAAGGACTTCAACGACTGCTACCTCACAATATC
GACAATCTGACGTTCATGTTAGCAATGGGATACAATCCACATTATGATAA
TATGATGAAACCCATGATAATTTTAACTGTCACTTACTCGTGAATAGAAT
TGCTATCCCATGAATCTAATTTAAAGCTCGCTAAGCTCACCCTTCCCCAA
CTTTCAATGTTTGAAGGAGGGAGGGTGGGCACTGAAAAAAAGTACTGTAC
TATTTTCGCTTAATGGGACCTATGTATTAGGATCGGAATTCGTCTTTCTT
CCTGATATTAAGTATTTAAAGAAGTTGAAACGTAGTAACTAGTAtgataa
aatgaaatttcaaaggTCTTGAATTTAAAATTGGTCATTTTGTTTCTTTC
AGAGGTGGTTCTAATTTTTAGTGCTCCTcagtttcaatttttcttgtttg
tttcCAAGAACTTctctattttttctaaaattgtattttttatataaata
tgAAATTTATGATAATCAGATTAGATAAAATTTCCTTATAGTAAAGATTT
CTGCTAAAAAGCT

Coding sequence (CDS) from alignment at scaffold_228:534114..535226

>TCONS_00053374 ID=TCONS_00053374|Name=TCONS_00053374|organism=Clytia hemisphaerica|type=CDS|length=585bp|location=Sequence derived from alignment at scaffold_228:534114..535226 (Clytia hemisphaerica)
ATGAGATTTAACGAATCTGTACAGATATTGCATCACACATGGCTTGATAT
ATGTTCGGTATTTTACAAACGATATCCAAACCCACAAAGTAAACATGTAT
TAGGCGAAGATGTCATTAAACGAAGTTTAGATGAAAACAACGTTCTAAAA
ACAACAAGGATTTTTGCCAAAACAAATGAAGTACCTGGATGGTTGATGAA
ATTTCTTCCAACGGCTACTGTTTATATCTTGGAAGAATCACATATTGATA
TACAGAATCATTTAATAACAACATATACTCGTAATATTACCCATAATACT
TTGTTATCTGTAGAAGAGCGTTGTGTGTTTTCTATAGATACTGATAACAA
AGAATTAACAAGTGTTCAACGTCGAGCTTGGATTGAATCTTATTTCCCGG
GATTGAAACCTGTTTTTGAACGTTTCGGATTGTCCAGATATAATTCGAAT
ATACAGAGAATGCATCGCGGGTTTACAAGTGTTTTAGGCGGTGATTCGTC
GACAAGAAGGACTTCAACGACTGCTACCTCACAATATCGACAATCTGACG
TTCATGTTAGCAATGGGATACAATCCACATTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033688XLOC_033688Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053374-proteinTCONS_00053374-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053374-exon-scaffold_228-1491911889:534114..535226TCONS_00053374-exon-scaffold_228-1491911889:534114..535226Clytia hemisphaericaexon
TCONS_00053374-exon-scaffold_228-1510915933:534114..535226TCONS_00053374-exon-scaffold_228-1510915933:534114..535226Clytia hemisphaericaexon
TCONS_00053374-exon-scaffold_228-1575043694:534114..535226TCONS_00053374-exon-scaffold_228-1575043694:534114..535226Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_228supercontigscaffold_228:534114..535226 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
39.1276	37.7346	23.1065	19.6064	15.9303	10.79	13.2195	12.99	9.68988	9.29885	7.35574	6.71725	4.90695	5.4483	8.86934	8.99203	15.5556	13.9208	6.7167	7.46509	10.1312	9.88329	36.3133	33.4641	7.5002	8.00993	7.04951	4.93905	14.2003	17.175
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006797PRELI/MSF1_dom
Blast
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BLAST of TCONS_00053374 vs. Swiss-Prot (Human)
Match: PRLD1 (PRELI domain-containing protein 1, mitochondrial OS=Homo sapiens GN=PRELID1 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.042e-39
Identity = 62/158 (39.24%), Postives = 98/158 (62.03%), Query Frame = -3 
Query:  563 ILHHTWLDICSVFYKRYPNPQSKHVLGEDVIKRSLDENNVLKTTRIFAKTNEVPGWLMKFLPTA---TVYILEESHIDIQNHLITTYTRNITHNTLLSVEERCVFSIDTDNKELTSVQRRAWIESYFPGLKPVFERFGLSRYNSNIQRMHRGFTSVLG 1027
            +L  +W  + + F++RYPNP SKHVL ED++ R +  +  L + R+  KTN +P W  +  P     +VY+LE+S +D QN  +TT+T NI H  L+ VEERCV+ +++DN   T ++R AW+ S   G+    + FGL+R+ SN+ +  +GF  +L 
Sbjct:   10 VLRSSWDQVFAAFWQRYPNPYSKHVLTEDIVHREVTPDQKLLSRRLLTKTNRMPRWAERLFPANVAHSVYVLEDSIVDPQNQTMTTFTWNINHARLMVVEERCVYCVNSDNSGWTEIRREAWVSSSLFGVSRAVQEFGLARFKSNVTKTMKGFEYILA 167
The following BLAST results are available for this feature:
BLAST of TCONS_00053374 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRLD13.042e-3939.24PRELI domain-containing protein 1, mitochondrial O... [more]
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