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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053247 ID=TCONS_00053247|Name=TCONS_00053247|organism=Clytia hemisphaerica|type=transcript|length=2873bp
CACGACGTCGTTTACAACAAAGTTACGTCTTGGTTGATTCCACTTTCGTC
TGGGTTGTAGTGATTGTAGATATTCTGATCGCCAGCGTGACCAAAACTCA
TTGACGAGGTGTTGCACTCTTCTCCATCGACGACGACTGTAGATGTCGGC
TTCAGTGAACTGACCAGGTGGTGCCATCACGATCTTCGTCTTTGATGTCA
ACAGTTGATTTGGGGTCAGTGGAACTAAGCTATTGCTGTCACTCAATACC
TCTACTGACAATGGACGACTGTTCACAATAGTATCAACCTCTGTCAAAAC
TGTATTTAAGCTCTCGTCGTTTAAACTTTGGCTGTGATTCTTCAGTAGCG
ACGTCAGGATGGAGCGACATGATCGAATTTGGCGCTCCCAGACTCCTCCC
ATGTGACTTACTAATGGTGTGTTGAAGTCCCATCCCATCCAGTCAATGTT
GTTGCGAAGAAGGAAGTCATTGATCTTCACCTGGTCCATCTCTTTGATTG
CCCTCTTGAATTCCGCGTCTGCTCCTACAAAGTTCGAACCATTGTCGGAG
CGAAGTTGTCGTACATATCCTCTTCGATTGATGAATCTTCGCAATGCCAT
GATGAAGGAATCTGTGTCGAGTGTTGCCGTGCTCTCGAGGTGAATGGCGC
GGCTTGCGAAGCATGTAAAACGAGCGACGTATCGTTTGTGCTCCTTCCGT
CCTTGTTTGATAATGAATGGACCAAACATGTCCACCCCTGTATACGTGAA
AGGTGCTGACTCTGAACATCTCTCTGATGGAAGATTTGCCATCTTCTGCT
CTCCAAGCTTGCCACGGATACGTCGACACGTTACACATTTGAAGATTTCG
TTTCGAACTCGTGAATTAGCGTTGACGATCATGAAACCATTTTGTCAGAT
TTCATTAAGAGTTGCATCTCTGCCTCCGTGGTGGATCTTCTGATGGAAGT
GTCGTATGATCAAAATTGACACAGGGTGCTTCTTTGGTATGACAACTGGA
TGCTTCAACTTCCATGGCAAAGTTGAATTGGCGATTCTTCCCCCAACACG
AATGATTCCATCGTTGTCAGTGAAGGGATCCATCCTGGATAATATCCCTT
TCTTTGATTGTTCGATCGTTGATGGAAAACTTGCTTTCTGTGTTAACTTC
ACGATAAGTAGCTCTGATTTGAAAAGAAGATCAACGTCAACCTTCCTCTT
TAGTCTCCATGCCATCATTCTTGCAATGATACGTTTAAGCTTGTACCAAC
TTGATACACGCTTGAACAATAATTCGAATTCATTTTCCACGATACTTGCT
AGATTGACTTTCATTGGCTTTGCCTTTTTGACTTCGACATCGTCATCTTC
GACTTGATATTGTTCTTTGGATTTCGTTTCGATTGGTTGCCATAGGAAGT
CGGGTCCGTTGATCCATCGCTGCTTTTCGACGAACTCTTGAACTGTTTTC
CCTCTTGAGCCATTGTCAGAGGGGTTGTCATCAGTTGGTACATATCTCCA
TTGCTCGACGTTAGACCCATCGTGGATTGCTTGAACTCGGTTCGTGACAA
AGAGATGAAATTTCTTGGCTCGATTTGAAATGTAGCCAAGAACCACTTTG
CTGTCGGTCCAGAAAACTTCGTAGTTTGGCACGAGTGTNTTGGCTCGATT
TGAAATGTAGCCAAGAACCACTTTGCTGTCGGTCCAGAAAATTTCGTAGT
CTGGCACGAGTGTCATTTCCTTCTTGAGTTGAGTTGCGACCTTGGTTGAT
GTAGTTGCTGCCGTCAGCTCTAATCGTGGTACTGTGGTTGGTTTCAAGGG
TGCGACTCGAGCTTTACCAATGATGAAACTGCAATGAATCCTCCCTTGGT
CGTTGACAAGTCTTGAATAGGAGACCTGACCGTAACCCTTCGTCGAGGCG
TCGGAGAAATGATGGAATGATACTTCCGATATTTCACCGAAATCTGATGG
TACGATACACCGTTGGATGCTGATTTCCTGAAGCAGATGCAAAGAGTTGC
GCCATTTTTCCCAAACGTGGCGCTGCTCTGGAGAGATCTCGTCGTCCCAA
CTCTTGTGTTCAGCACATATTTGTTGTAGCAGTTGTTTTGCCGGCAAAAC
GAACGGACCACCGAATCCAAGGGGATCATACACCGAACTGATGGATGCCA
AAATGCCTCGTCTTGTCAAAGGAGTGTCTTTCAATACGATTCGAAAACAG
AAGGAGTCTGTCTCGACACACCAACTGACTCCAAGGGCTCTTTCGATAGG
TAGAGACTGGATTGAGAGGTCAACGTCTTTGATTCCTTTTGCTCTGATAT
CAGCTGGGATTTCGTCTAGCACATCTCTTGAGCTGCTCATGAATTGGGTG
AGATTGAAACCTCCGGCTGCACACATTCCTTTGACGTTGCGTTGGAGTTT
GACGGTTGATTCGATATTGGTTGCTCCTTTCAACATGTCGTCGACgtaga
aatttcgaaaaagggTGGATGCTGCTTCTTTGCCGAATTCTTTCTCGTTA
TCGATAGCTGTTCGTCGAAGGGCGTAATTACAAGTGCTTAGGGAGTGTGT
TCCTCCGAATAAATGAACACACATCATGTAATCTTCGGGTTCTGCATCAA
GATTACCTTCCGGCCACCAAATGAAGCGTAGCATGTCTTGTTGTTCAACG
GGTACTCTGACTTGATAAAACATGCTTTCGATATCTGCAACTAACGCAAT
TTGCTCTTCTCGAAATCTTGACAGCACTCCCACAATCTGATTCGTAAGAT
CTGGTCCTTGCAGAAGCATCGAGTTAAGCGAAACACCACCGTAAGTCGCA
CTGCAATCGAAAACGACTCGTATCTTTTCTGGCTTTTTGGGATGGTAGAC
TCCGTGGTGTGGTAGGTACCAAG Run BLAST on NCBI protein sequence of TCONS_00053247-protein >TCONS_00053247-protein ID=TCONS_00053247-protein|Name=TCONS_00053247-protein|organism=Clytia hemisphaerica|type=polypeptide|length=658bp
WYLPHHGVYHPKKPEKIRVVFDCSATYGGVSLNSMLLQGPDLTNQIVGVL
SRFREEQIALVADIESMFYQVRVPVEQQDMLRFIWWPEGNLDAEPEDYMM
CVHLFGGTHSLSTCNYALRRTAIDNEKEFGKEAASTLFRNFYVDDMLKGA
TNIESTVKLQRNVKGMCAAGGFNLTQFMSSSRDVLDEIPADIRAKGIKDV
DLSIQSLPIERALGVSWCVETDSFCFRIVLKDTPLTRRGILASISSVYDP
LGFGGPFVLPAKQLLQQICAEHKSWDDEISPEQRHVWEKWRNSLHLLQEI
SIQRCIVPSDFGEISEVSFHHFSDASTKGYGQVSYSRLVNDQGRIHCSFI
IGKARVAPLKPTTVPRLELTAATTSTKVATQLKKEMTLVPDYEIFWTDSK
VVLGYISNRAXTLVPNYEVFWTDSKVVLGYISNRAKKFHLFVTNRVQAIH
DGSNVEQWRYVPTDDNPSDNGSRGKTVQEFVEKQRWINGPDFLWQPIETK
SKEQYQVEDDDVEVKKAKPMKVNLASIVENEFELLFKRVSSWYKLKRIIA
RMMAWRLKRKVDVDLLFKSELLIVKLTQKASFPSTIEQSKKGILSRMDPF
TDNDGIIRVGGRIANSTLPWKLKHPVVIPKKHPVSILIIRHFHQKIHHGG
RDATLNEI Run BLAST on NCBI transcript from alignment at scaffold_227:44583..47455 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053247 ID=TCONS_00053247|Name=TCONS_00053247|organism=Clytia hemisphaerica|type=transcript|length=2873bp|location=Sequence derived from alignment at scaffold_227:44583..47455 (Clytia hemisphaerica)
CTTGGTACCTACCACACCACGGAGTCTACCATCCCAAAAAGCCAGAAAAG
ATACGAGTCGTTTTCGATTGCAGTGCGACTTACGGTGGTGTTTCGCTTAA
CTCGATGCTTCTGCAAGGACCAGATCTTACGAATCAGATTGTGGGAGTGC
TGTCAAGATTTCGAGAAGAGCAAATTGCGTTAGTTGCAGATATCGAAAGC
ATGTTTTATCAAGTCAGAGTACCCGTTGAACAACAAGACATGCTACGCTT
CATTTGGTGGCCGGAAGGTAATCTTGATGCAGAACCCGAAGATTACATGA
TGTGTGTTCATTTATTCGGAGGAACACACTCCCTAAGCACTTGTAATTAC
GCCCTTCGACGAACAGCTATCGATAACGAGAAAGAATTCGGCAAAGAAGC
AGCATCCAccctttttcgaaatttctacGTCGACGACATGTTGAAAGGAG
CAACCAATATCGAATCAACCGTCAAACTCCAACGCAACGTCAAAGGAATG
TGTGCAGCCGGAGGTTTCAATCTCACCCAATTCATGAGCAGCTCAAGAGA
TGTGCTAGACGAAATCCCAGCTGATATCAGAGCAAAAGGAATCAAAGACG
TTGACCTCTCAATCCAGTCTCTACCTATCGAAAGAGCCCTTGGAGTCAGT
TGGTGTGTCGAGACAGACTCCTTCTGTTTTCGAATCGTATTGAAAGACAC
TCCTTTGACAAGACGAGGCATTTTGGCATCCATCAGTTCGGTGTATGATC
CCCTTGGATTCGGTGGTCCGTTCGTTTTGCCGGCAAAACAACTGCTACAA
CAAATATGTGCTGAACACAAGAGTTGGGACGACGAGATCTCTCCAGAGCA
GCGCCACGTTTGGGAAAAATGGCGCAACTCTTTGCATCTGCTTCAGGAAA
TCAGCATCCAACGGTGTATCGTACCATCAGATTTCGGTGAAATATCGGAA
GTATCATTCCATCATTTCTCCGACGCCTCGACGAAGGGTTACGGTCAGGT
CTCCTATTCAAGACTTGTCAACGACCAAGGGAGGATTCATTGCAGTTTCA
TCATTGGTAAAGCTCGAGTCGCACCCTTGAAACCAACCACAGTACCACGA
TTAGAGCTGACGGCAGCAACTACATCAACCAAGGTCGCAACTCAACTCAA
GAAGGAAATGACACTCGTGCCAGACTACGAAATTTTCTGGACCGACAGCA
AAGTGGTTCTTGGCTACATTTCAAATCGAGCCAANACACTCGTGCCAAAC
TACGAAGTTTTCTGGACCGACAGCAAAGTGGTTCTTGGCTACATTTCAAA
TCGAGCCAAGAAATTTCATCTCTTTGTCACGAACCGAGTTCAAGCAATCC
ACGATGGGTCTAACGTCGAGCAATGGAGATATGTACCAACTGATGACAAC
CCCTCTGACAATGGCTCAAGAGGGAAAACAGTTCAAGAGTTCGTCGAAAA
GCAGCGATGGATCAACGGACCCGACTTCCTATGGCAACCAATCGAAACGA
AATCCAAAGAACAATATCAAGTCGAAGATGACGATGTCGAAGTCAAAAAG
GCAAAGCCAATGAAAGTCAATCTAGCAAGTATCGTGGAAAATGAATTCGA
ATTATTGTTCAAGCGTGTATCAAGTTGGTACAAGCTTAAACGTATCATTG
CAAGAATGATGGCATGGAGACTAAAGAGGAAGGTTGACGTTGATCTTCTT
TTCAAATCAGAGCTACTTATCGTGAAGTTAACACAGAAAGCAAGTTTTCC
ATCAACGATCGAACAATCAAAGAAAGGGATATTATCCAGGATGGATCCCT
TCACTGACAACGATGGAATCATTCGTGTTGGGGGAAGAATCGCCAATTCA
ACTTTGCCATGGAAGTTGAAGCATCCAGTTGTCATACCAAAGAAGCACCC
TGTGTCAATTTTGATCATACGACACTTCCATCAGAAGATCCACCACGGAG
GCAGAGATGCAACTCTTAATGAAATCTGACAAAATGGTTTCATGATCGTC
AACGCTAATTCACGAGTTCGAAACGAAATCTTCAAATGTGTAACGTGTCG
ACGTATCCGTGGCAAGCTTGGAGAGCAGAAGATGGCAAATCTTCCATCAG
AGAGATGTTCAGAGTCAGCACCTTTCACGTATACAGGGGTGGACATGTTT
GGTCCATTCATTATCAAACAAGGACGGAAGGAGCACAAACGATACGTCGC
TCGTTTTACATGCTTCGCAAGCCGCGCCATTCACCTCGAGAGCACGGCAA
CACTCGACACAGATTCCTTCATCATGGCATTGCGAAGATTCATCAATCGA
AGAGGATATGTACGACAACTTCGCTCCGACAATGGTTCGAACTTTGTAGG
AGCAGACGCGGAATTCAAGAGGGCAATCAAAGAGATGGACCAGGTGAAGA
TCAATGACTTCCTTCTTCGCAACAACATTGACTGGATGGGATGGGACTTC
AACACACCATTAGTAAGTCACATGGGAGGAGTCTGGGAGCGCCAAATTCG
ATCATGTCGCTCCATCCTGACGTCGCTACTGAAGAATCACAGCCAAAGTT
TAAACGACGAGAGCTTAAATACAGTTTTGACAGAGGTTGATACTATTGTG
AACAGTCGTCCATTGTCAGTAGAGGTATTGAGTGACAGCAATAGCTTAGT
TCCACTGACCCCAAATCAACTGTTGACATCAAAGACGAAGATCGTGATGG
CACCACCTGGTCAGTTCACTGAAGCCGACATCTACAGTCGTCGTCGATGG
AGAAGAGTGCAACACCTCGTCAATGAGTTTTGGTCACGCTGGCGATCAGA
ATATCTACAATCACTACAACCCAGACGAAAGTGGAATCAACCAAGACGTA
ACTTTGTTGTAAACGACGTCGTG Coding sequence (CDS) from alignment at scaffold_227:44583..47455 >TCONS_00053247 ID=TCONS_00053247|Name=TCONS_00053247|organism=Clytia hemisphaerica|type=CDS|length=1977bp|location=Sequence derived from alignment at scaffold_227:44583..47455 (Clytia hemisphaerica)
TGGTACCTACCACACCACGGAGTCTACCATCCCAAAAAGCCAGAAAAGAT
ACGAGTCGTTTTCGATTGCAGTGCGACTTACGGTGGTGTTTCGCTTAACT
CGATGCTTCTGCAAGGACCAGATCTTACGAATCAGATTGTGGGAGTGCTG
TCAAGATTTCGAGAAGAGCAAATTGCGTTAGTTGCAGATATCGAAAGCAT
GTTTTATCAAGTCAGAGTACCCGTTGAACAACAAGACATGCTACGCTTCA
TTTGGTGGCCGGAAGGTAATCTTGATGCAGAACCCGAAGATTACATGATG
TGTGTTCATTTATTCGGAGGAACACACTCCCTAAGCACTTGTAATTACGC
CCTTCGACGAACAGCTATCGATAACGAGAAAGAATTCGGCAAAGAAGCAG
CATCCAccctttttcgaaatttctacGTCGACGACATGTTGAAAGGAGCA
ACCAATATCGAATCAACCGTCAAACTCCAACGCAACGTCAAAGGAATGTG
TGCAGCCGGAGGTTTCAATCTCACCCAATTCATGAGCAGCTCAAGAGATG
TGCTAGACGAAATCCCAGCTGATATCAGAGCAAAAGGAATCAAAGACGTT
GACCTCTCAATCCAGTCTCTACCTATCGAAAGAGCCCTTGGAGTCAGTTG
GTGTGTCGAGACAGACTCCTTCTGTTTTCGAATCGTATTGAAAGACACTC
CTTTGACAAGACGAGGCATTTTGGCATCCATCAGTTCGGTGTATGATCCC
CTTGGATTCGGTGGTCCGTTCGTTTTGCCGGCAAAACAACTGCTACAACA
AATATGTGCTGAACACAAGAGTTGGGACGACGAGATCTCTCCAGAGCAGC
GCCACGTTTGGGAAAAATGGCGCAACTCTTTGCATCTGCTTCAGGAAATC
AGCATCCAACGGTGTATCGTACCATCAGATTTCGGTGAAATATCGGAAGT
ATCATTCCATCATTTCTCCGACGCCTCGACGAAGGGTTACGGTCAGGTCT
CCTATTCAAGACTTGTCAACGACCAAGGGAGGATTCATTGCAGTTTCATC
ATTGGTAAAGCTCGAGTCGCACCCTTGAAACCAACCACAGTACCACGATT
AGAGCTGACGGCAGCAACTACATCAACCAAGGTCGCAACTCAACTCAAGA
AGGAAATGACACTCGTGCCAGACTACGAAATTTTCTGGACCGACAGCAAA
GTGGTTCTTGGCTACATTTCAAATCGAGCCAANACACTCGTGCCAAACTA
CGAAGTTTTCTGGACCGACAGCAAAGTGGTTCTTGGCTACATTTCAAATC
GAGCCAAGAAATTTCATCTCTTTGTCACGAACCGAGTTCAAGCAATCCAC
GATGGGTCTAACGTCGAGCAATGGAGATATGTACCAACTGATGACAACCC
CTCTGACAATGGCTCAAGAGGGAAAACAGTTCAAGAGTTCGTCGAAAAGC
AGCGATGGATCAACGGACCCGACTTCCTATGGCAACCAATCGAAACGAAA
TCCAAAGAACAATATCAAGTCGAAGATGACGATGTCGAAGTCAAAAAGGC
AAAGCCAATGAAAGTCAATCTAGCAAGTATCGTGGAAAATGAATTCGAAT
TATTGTTCAAGCGTGTATCAAGTTGGTACAAGCTTAAACGTATCATTGCA
AGAATGATGGCATGGAGACTAAAGAGGAAGGTTGACGTTGATCTTCTTTT
CAAATCAGAGCTACTTATCGTGAAGTTAACACAGAAAGCAAGTTTTCCAT
CAACGATCGAACAATCAAAGAAAGGGATATTATCCAGGATGGATCCCTTC
ACTGACAACGATGGAATCATTCGTGTTGGGGGAAGAATCGCCAATTCAAC
TTTGCCATGGAAGTTGAAGCATCCAGTTGTCATACCAAAGAAGCACCCTG
TGTCAATTTTGATCATACGACACTTCCATCAGAAGATCCACCACGGAGGC
AGAGATGCAACTCTTAATGAAATCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053247-exon-scaffold_227-1491911889:44583..47455 | TCONS_00053247-exon-scaffold_227-1491911889:44583..47455 | Clytia hemisphaerica | exon |
| TCONS_00053247-exon-scaffold_227-1510915933:44583..47455 | TCONS_00053247-exon-scaffold_227-1510915933:44583..47455 | Clytia hemisphaerica | exon |
| TCONS_00053247-exon-scaffold_227-1575043694:44583..47455 | TCONS_00053247-exon-scaffold_227-1575043694:44583..47455 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_227 | supercontig | scaffold_227:44583..47455 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008042 | Retrotrans_Pao |
Blast
The following BLAST results are available for this feature:
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