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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053233 ID=TCONS_00053233|Name=TCONS_00053233|organism=Clytia hemisphaerica|type=transcript|length=504bp
TACTTCAAATTCCAAACAGACACCTGGTGcttcaaatttaatttctaaGC
TGAATTCATCGAATCCTGATGCGAGaaatctcGTATCGCACGAATTGGCG
GGGTTGAATATGGTGATGCTACAATTCTAGTGATGGAAAAattttttaca
AGAGCTTTCTTAAGCACCTGCAACATGGAAGGAAACAACGGGAAGTTTGC
CTTCAAGAAATCCAAGGCTTATTCTGCAATTAGTGATGTTCTAGTGAAAA
AGTATGGCACAACGGAAGATAATGTTGGGAAGAAAGTTGCCAACAAATTA
CGAAACGCCCCTGGACAGAAAGGTGGACTTGGCAGAAAGAAGTAGaaagt
ttatttatttattttatttttatgtgtaGATTTGAATAGGGTTTTGCTTA
CTACTTCCCATAATAAAACATGGACCTGACTggattaatttttatttttg
ttaagtCACAATATAACATTGAATTCAAGGATTCTTAGCCAAAGTAGCAC
TAGC Run BLAST on NCBI transcript from alignment at scaffold_227:101072..109060- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053233 ID=TCONS_00053233|Name=TCONS_00053233|organism=Clytia hemisphaerica|type=transcript|length=7989bp|location=Sequence derived from alignment at scaffold_227:101072..109060- (Clytia hemisphaerica)
TACTTCAAATTCCAAACAGACACCTGGTGCTTCAAATTTAATTTCTAAGC
TGAATTCATCGAATCCTGATGCGAGGTGAATAATATTATAATAATTGAGT
CCAAATTTAATTCATAANGAGATGCAATCTCTTGTATTCTTGAAAAACAG
GACATTTTATCAACTTTCACAACAAACTTATCTCAATTTTGGCCGTATAT
TTACACAAATTCTAACAAGGATGCAATATTTTTGGATAAATCTGACCATG
CTAGGTATATTTGAAAAATTAAATACTTGCAACATCGAATAAGTTTGAAC
TCACTTTTTTATGATGGTTGTCCGAGTAGATGCANTTTATTAACGTGAAC
TGAAAAATTTCGTGTTAATTTTTTGCGTGTTAATTTCAAGGCCGTTGAAT
AGTTGCCTAGTAATATTCGTGTAATAAAAAATAAAAAATTTAAACCCGGA
GCGGAATTTACTGATTAATGATTGAATTTCCCTTGGTATTTTAAAATGCA
TTTTAAACGTGGAAAACCTTTGCTTGTGAATTTGGACATTTTTTTACGTG
CGTTCAAAACGTGATAATTTTTGCTGTTAATTTGGTCGTATTTTCTTCTA
CGTGGATTTTGAATGTGAAAAACCTTTGGTTGTGAATTTGTACATTTTCT
TCCACATGCGTGTAAAACGTGGAAAACTTTTGGTTGTGAATTTGGACATT
TTCTTCCACATGCGTTTAAAACATGGAAATTTTTGCTCTGAATTTTGACA
TTTTATTCCACATGCGTTTAAAACGTGGAAATTTTTGCTCTGAATTTGGA
CATTTTCTTCCATGTGCGTTTAAAATGTGGAAAACTTTAACTTTGTCGTA
AACTTGACATTTTCTTCCACATGCATTTAAAAAAATGTAGAAAAGTTTTC
CAGTCAGGCAAACAAAAAGATGTGTGTTCGGAATGTGGGTGAAGAAAAAA
AGCTTTCATGCAGGNTGCATTTAAAAAAATGTAAAAAGTTTTCCAGTCAG
GCAAACAAAAAGATGTGTGTTTTCGGAATGTGGGTGAAGAAAAAAAGCTT
TCATGCAGCCGGCCAGCAAAAAAAATTTATTTGCTTTTTTTGATAACTTA
AGTAATAAGATCATTGAAATAGAACTTTAAAGATAACTTTATATACAAAC
AATATTCGCAGTATGAAGTAAGCCCTGATATGTATCAACTACTAACAAAC
AAATCTTGATTTACAAGGGGGAATATCTATAACCAAACTACTTTAATAGC
TGGAATGCTCCAACTTGAGTTTTTATATGATGAACTATATAGATAGGGTG
GGGCGTCAAATGTCAAAGTCAGAAAATTCAAGATGTAGTGTTTTTTTATG
AAAATTTAACCTATTGTGAGGCATTCTGCGCAATTTTTAAGGTCAGNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTG
ATTGTCTCTTCAAGTTCGCCTTCTCGAATTACAACTGTTGTAATTTTAAA
GAAAACTTTCAATAATCACAGGAAAAAATAATACAAAGTTCACCATGGAC
GTTTTGGTGAATTCACGGTCAAAAGCTACAATGAAATTGCAAACTGCAGT
TTTTCACCATGAATTAATCAATGAATTCAGTGAACTTTTTAGATTTTATC
CTGTGAATGGGGGGAGGGAATCTTGTAAGGATTATGATAATGAAAATTAA
TATATTTTGATTAGTTTAAGTACTTATATCCATTTTAAGCATAATTTTTC
TTTCAACATTAACTGCAAAAAATTAACTTATTTAATTTGTTGAAAATTGC
TCTTATATACTTATTTTTCACTTTATTAAATAATAACGGAAAGATTAATA
TTTGTGTTCCTGTCATCAAGTTAGACCCATTTTTCATACAACTCAAGTTT
AAATTTTAGCATTTTTTCACTTTAAAAATGTATCTCAATTTCCGTTTTTT
TTTCTTCAGCTATGGATTCGCATACAACTCAAGTTTAAATTTTAGCATTT
TTTCACTTTAAAAATGTATCTTAATTTCCGTTTTTTTTCTTCAGCTATGG
ATTCGCATCTTGAAGAATTCTGCTGTGTTGCTTTTGTGGAAAATGGCTCA
AAAAAGATGGGAACAGTTCTATCGAAGTGGATTTTAAATGGAATTTTGTA
TTGGCCAAAAACAAATTTCCATCTGCTAATGAAACAACGTGCTCCACCAA
AAGAAACGTGGTATCAAATTGCAGATCACTCTATCTTGTATACTGGTAAT
TATCTTTAATCAAGTCATTTTATAACCGTTTAGTTGCTCTAATTAAAAAA
AGACACTTAAAAATCTTTGTCTTACAATAATGGAATCTTTCATTCATTTT
AACTTCTCGTCCTAAATTTCCAGTTTTTTTGTTTTAAGGGAGTTATGAAA
GCTGTATCGCCATCGACAGCTCAACTGAAACTGAAGGTGAAGTTGGAGAC
GAGTTGCAAGCTGGCAAAGTGAACGACGTGAGCTTTTCCAGTGAGGAGTC
CGATGCAGAGTCCGATTTGGGTGGAGATTATCTCAATGGCACTGGTGGAA
ACGTTCCTTTGTTTCCTCAAAAGTACGCATCGCCAAAAGATGGACTCTCG
ATCAAACCGTATGTATTAATATCATATGTTTAAGTGTTACAATTGGAGAG
TTATAATCATCGAAGAGCACTTCATTTTAATCCTTCTTGAATGAAATTTG
AATTTGGTCTGTTTCTTTTTTTACATTAAAATCCAAACTTCGAATCTTCA
AATATTATTTTAATATAAAATTCATTCTTCTAAGTATAAATTTGACCAGG
GATATTTCAATATTGCATTATTTTTCATACAGGGATGGTACTTCAAATTC
CAAACAGACACCTGGTGCTTCAAATTTAATTTCTAAGCTGAATTCATCGA
ATCCTGATGCGAGGTGAATAATATTATAATAATTGAGTCCAAATTTAATT
CATAATACCTTATTACACAAATATTACTAGTCATTTTATTAACGCGAACT
GAAAAATTTCGTGTTAATTTTTTGCGTGTTAATTTCAAGGCCGTTGAATA
GTTGCCTAGTAATATTCGTGTAATAAGGTAGTAATAGTAGAAATAAAATT
ATGAAAATATTTTAAAAGTATATAGATTTCAGTACAATTCTAACAATTGT
ATTATTGGTGTTCTTGGTAATTAGATATTGGTATCAAGGCTGTACACATC
CCCTAAAAAGATTTTAGATATAATTTTTTGGCCTATATCGTAGGCTTTAG
TAGATTTATAAAATAATTTTGTTAAATTTACGTTTGTTTTAGGCATCAAC
AAAAGTCGATTCAACTTTCATCTCCGAACTCATTGAACGAATCTTCACCG
GTTTTGTAAGTTGACTAAACTATTTCGTCGTAATGTCAGGGCTCTGTCCA
TACACACTTTTTTAATAAGAATAGTGTACTTTGGCTGATGTTGTGCATTA
ATCTTCTTTTTCTATTGTTCTAAACAGTAGTACTTTTCCTACATTTTTTA
CCCACTATAGTCGGAGCCCTTAATACTTTTGAATTTTGAACTCATTTAAT
TTGGACTGCAGTTGTGATTTAGTGATGATAAAAAAGTGATACCCTTTGAT
ACCATTTGATACCCATTTTGACGTTTATGATGACTTCGAACCTCCATATA
TCGATAAGATATCAGGAATAAAAAAGTGATGGTTTAATATTTAAGACAGA
GTACACCCTTTTTAAGATGAAAAAACAAATTATACCGTGTGTATTTTTGG
ATACAAATCTTTATACTTATACTAAATCTTTTCAGACCGAACTATCTTGG
TGGAACTCCTAAAGCCGTCAAAAGATCCGCATCAAGGTAATTTCTGAATA
AATAGTCATTGAGGTACTCCAAAAGCATAGGGAATTTATGATTCACATTT
TGTCTTTTTTAACAGAAGCAATGTTTTAGCACTTAAAGGTCATAACTTTT
GATGTAGTTAACCAAATTTGATAAATTACCCCTCAAAATATATTCCAATA
GATCAATTTATTATTTGGTTCTTCAGGGTATTCCTTCAATAGTATTCGTT
TTATTTATTAGAAGACAAGAAGAAGAGGAGAGCTTGGAACTTATTGATGC
GGCGAAGATTATGGGTCAGTTTATGTTAGTTTTGTGTACTCCTAGCGAAG
TCCTGATATACAGTTTTCTTTGTAAAGCTAATGTGATATTATAGGAGTCA
GAAATTTTGATTTTAGTAATAAACTAAATTTTAAGACATCTCTGTCAGGA
AATTAAGCATTAAANGATTTTAGTTATAAACTAAATTTTAAGACATCTCT
GTCAGGAAATTAAGCATTAAAAACGTTTGTCAGGGACCGATGGTTTAGTC
TTGAAAATGCTCTTTCTGTAAACAGTTTTTATGAAATGTGTTGACTTTTA
TAAGAACATTCACGAGCCTTAAATTTGGCAAAGAAACTAAGAACAAGCTC
AGCCTCGGAATTTTCTGAGAACTTTTAAAAGCAACCTTTTTTTGGCACTG
TTAATACAGAAAGGGATGTTTTCCAGAATATTTTACTCTTTTTCAGCAAA
AAGCTTGTTTAGAAGATTTTCAAGGTTTTTTTGAAGATAGAAGTTTTGCT
TTGGAAATAATGAAGGTTGCAAAGTACTGTCAAAAAGAACATTAAGAACA
GCTGAATAACATGAAGCCTTAAAATTCCCAAAACTTAAGAACAATTGAGC
CTTAGTCAAAATTTACTGGTTCTTTTAAAAAGTGATTGTAGTTCATCAGT
TAAGGCCTTTGAATTTTGTCAATGCATTGCTTAAAAAGCTAACTTCTGTC
TTTTCTATCTTCAGAACAATTCAAAATGTTGTACGATCGGCAAAACAAGA
TCATGACAGAAATTGTGAAATTAAGAGCACACATCGACAACAAGATGGCA
TCTCTTCCCATCGAAGACGATCAATTCCAGCTTCCAGAAGTAAACAGCCA
ACAAGAAATGGATACCTTGGAAGAAAATCTAAATGATCCTGATTTCTTAG
CAAAGTTTGTAAGTATGATTAATTCAGTTAATTTCAATTTAGCTGTCAGA
AAAAACGAAATTCAAATCCCCAGCCATAAAAGATATGGGAATATCGATCC
CCATTGAGTTTTGGTCCGTTACTTTTACCTCCACTAGCTAATAAAATCCC
ACCGGGTCTGTGAGAAGGGGGTATCTGATTAACACCAAAAAACAGCGAAC
AACAAACATCCTGTTTCATCATAGTAAATTATGTGAAGACTTTGTGTCAT
ATCTTTGCACTGAGTAGATGCTTTTGAACGTTTTTTCACAGTGATTATGC
TCTGAAATTGAAGAATTACCTCTTTGAAAATGGTGATAATATCTCAGTAA
ATTTTTCTTTTTTCTTATCTATATCTTCATTTTGAAAGATTTTTTCAACT
TTCTTTTTGATAATATCCACTTCCGGGTTAACTTTTCGACCGGCACCTGC
ATCTCTATCAAATTGAAGGTGAAATTAAATTCGATCTCTTTTTATAGAAA
TCTCGTATCGCACGAATTGGCGGGGTTGAATATGGTGATGCTACAATTCT
AGTGATGGAAAAGTAAGTAGTGATAAAAGAGATCCTTCGGTCTTCTAGAT
ATTTAAATGTCTAATAACAAAGATCTTTCAATACTGAAAACGATAGTGCT
TCAAATCTTGAGATGGTGATTTTCAGTTCATAGTTCTGAAAGTTTTCTGA
CTACTGGTTTTGTACGTCCGATGTTTATTATGCATGGTTCTTCAACGAGG
CAAAGGAAAACAATGCTCTATTTAATTGCAACATTTTTTAAATAAAAAGA
CTTTTCCTTTTTGTTTTTTTCCATCGTGCATTTCGAACTTTAAATTAAAG
TTAACTAAACAAAGACCAAGTTTTTTCCCAAATGGGGTAGATCCTAGTGG
GTCACTGAGGCAGGGGTGTTGTGTTATATCGTTCTCTTTAAAAAATCACA
ATTCAAAATACATAGATCATTTTCAAAACTTTTTTTCTTTAGATTTTTTA
CAAGAGCTTTCTTAAGCACCTGCAACATGGAAGGAAACAACGGGAAGTTT
GCCTTCAAGAAATCCAAGGCTTATTCTGCAATTAGTGGTAATTTGTTTCT
ACTTTTTAAAATTTAGTGACTGGTTGATTCTAATGAATAATCAAATAAAA
AAGAAGGCTGTTTCTTACAATCAATCAAGCCCAATCTAGTGTACCAAATA
TCTATCCTACGAAGAAGATTTTAATGATCTCAATAGGTTTCTCAGATTAA
GAAAGTAAGGTGACTGATATCTATTCTTGTTTTATTTTTCCCTGTGTTAA
TGTTTTTGTCGGTTTTGCCAACAAATCTCTCTCTCTAAAGATTTTACTAT
TATTTTATTTCTTTCAATAGATGTTCTAGTGAAAAAGTATGGCACAACGG
AAGATAATGTTGGGAAGAAAGTTGCCAACAAATTACGAAACGCCCCTGGA
CAGAAAGGTGGACTTGGCAGAAAGAAGTAGAAAGTTTATTTATTTATTTT
ATTTTTATGTGTAGATTTGAATAGGGTTTTGCTTACTACTTCCCATAATA
AAACATGGACCTGACTGGATTAATTTTTATTTTTGTTAAGTCACAATATA
ACATTGAATTCAAGGATTCTTAGCCAAAGTAGCACTAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053233-exon-scaffold_227-1575043694:108986..109060 | TCONS_00053233-exon-scaffold_227-1575043694:108986..109060 | Clytia hemisphaerica | exon |
| TCONS_00053233-exon-scaffold_227-1575043694:102149..102213 | TCONS_00053233-exon-scaffold_227-1575043694:102149..102213 | Clytia hemisphaerica | exon |
| TCONS_00053233-exon-scaffold_227-1575043694:101624..101718 | TCONS_00053233-exon-scaffold_227-1575043694:101624..101718 | Clytia hemisphaerica | exon |
| TCONS_00053233-exon-scaffold_227-1575043694:101072..101340 | TCONS_00053233-exon-scaffold_227-1575043694:101072..101340 | Clytia hemisphaerica | exon |
| TCONS_00053233-exon-scaffold_227-1510915933:108986..109060 | TCONS_00053233-exon-scaffold_227-1510915933:108986..109060 | Clytia hemisphaerica | exon |
| TCONS_00053233-exon-scaffold_227-1510915933:102149..102213 | TCONS_00053233-exon-scaffold_227-1510915933:102149..102213 | Clytia hemisphaerica | exon |
| TCONS_00053233-exon-scaffold_227-1510915933:101624..101718 | TCONS_00053233-exon-scaffold_227-1510915933:101624..101718 | Clytia hemisphaerica | exon |
| TCONS_00053233-exon-scaffold_227-1510915933:101072..101340 | TCONS_00053233-exon-scaffold_227-1510915933:101072..101340 | Clytia hemisphaerica | exon |
| TCONS_00053233-exon-scaffold_227-1491911889:108986..109060 | TCONS_00053233-exon-scaffold_227-1491911889:108986..109060 | Clytia hemisphaerica | exon |
| TCONS_00053233-exon-scaffold_227-1491911889:102149..102213 | TCONS_00053233-exon-scaffold_227-1491911889:102149..102213 | Clytia hemisphaerica | exon |
| TCONS_00053233-exon-scaffold_227-1491911889:101624..101718 | TCONS_00053233-exon-scaffold_227-1491911889:101624..101718 | Clytia hemisphaerica | exon |
| TCONS_00053233-exon-scaffold_227-1491911889:101072..101340 | TCONS_00053233-exon-scaffold_227-1491911889:101072..101340 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_227 | supercontig | scaffold_227:101072..109060 - |
Blast
The following BLAST results are available for this feature:
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