TCONS_00053227 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053227
Unique NameTCONS_00053227
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length336

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053227 ID=TCONS_00053227|Name=TCONS_00053227|organism=Clytia hemisphaerica|type=transcript|length=336bp
GTGAAATACGGATACAGATCTCTTGATTTGTCACCGTGTTGGAATTCAGT
CAACCATTTCTTCATCTTGGTAATTTGACCATCGACAGTTGATTCACCAA
GAACGTCTGATGGCACCGGTGGATTGGGAatACCTTTACTTCCTTCAAAA
GATCCATCCATGGACGGTTCTCTGAGTGAATACGAAGATGTGCTTTCTCG
AAACTCGATGCCATTAAGGACGGCAGCAAAAGGAGCGACGCCAAGGACAT
TATTCTCTTCTTTGTGATTGTCATTGATACCGGCTACTCCCCAGTCTTTG
TGGTCTGCTACGAAGTAGTTTCTTCCTCCGACTGTA
Run BLAST on NCBI

transcript from alignment at scaffold_227:387575..388348+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053227 ID=TCONS_00053227|Name=TCONS_00053227|organism=Clytia hemisphaerica|type=transcript|length=774bp|location=Sequence derived from alignment at scaffold_227:387575..388348+ (Clytia hemisphaerica)
GTGAAATACGGATACAGATCTCTTGATTTGTCACCGTGTTGGAATTCAGT
CAACCATTTCTTCATCTTGGTAATTTGACCATCGACAGTTGATTCACCAA
GAACGTCTGATGGCACCGGTGGATTGGGAATGGCTGAAATGAGATTGTTT
ATTTTAGTCGGAAAGCAGAATACATCAATTCAAAACTGATTtggtttcat
tgctgaaaaatattgaaaatgaaatatatttaaaCTGCCAATCGAGTTGA
TCTTTTAGTACGAAACATGTCTTTCTTAGCTTTACATCAACAAATGATCT
TAAATAGTCAAAACATTTTCAGTCAAAAAGCCCTTATTAGCCCCTAGGTA
TTCTTATTGAAAATTAAgagttttccaaattttcaccTGAAAGAAATTTA
AGAGCCGGAATTTTCTCAAGGCTGAttataaaaaatggaaaaaggtttaa
ttcaaaaaaacattcgagAGGGTTAAAATTCCAAAACGAAtgatttcatt
aaaataatGGACTGGTTTCAACGCATCACTAAATATCACGTCACgatgaa
tttgaaaaacttaaaacatACCTTTACTTCCTTCAAAAGATCCATCCATG
GACGGTTCTCTGAGTGAATACGAAGATGTGCTTTCTCGAAACTCGATGCC
ATTAAGGACGGCAGCAAAAGGAGCGACGCCAAGGACATTATTCTCTTCTT
TGTGATTGTCATTGATACCGGCTACTCCCCAGTCTTTGTGGTCTGCTACG
AAGTAGTTTCTTCCTCCGACTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033596XLOC_033596Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053227-exon-scaffold_227-1491911889:387575..387703TCONS_00053227-exon-scaffold_227-1491911889:387575..387703Clytia hemisphaericaexon
TCONS_00053227-exon-scaffold_227-1510915933:387575..387703TCONS_00053227-exon-scaffold_227-1510915933:387575..387703Clytia hemisphaericaexon
TCONS_00053227-exon-scaffold_227-1575043694:387575..387703TCONS_00053227-exon-scaffold_227-1575043694:387575..387703Clytia hemisphaericaexon
TCONS_00053227-exon-scaffold_227-1491911889:388142..388348TCONS_00053227-exon-scaffold_227-1491911889:388142..388348Clytia hemisphaericaexon
TCONS_00053227-exon-scaffold_227-1510915933:388142..388348TCONS_00053227-exon-scaffold_227-1510915933:388142..388348Clytia hemisphaericaexon
TCONS_00053227-exon-scaffold_227-1575043694:388142..388348TCONS_00053227-exon-scaffold_227-1575043694:388142..388348Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_227supercontigscaffold_227:387575..388348 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.887745	0	0	0	0	0	0	0.14958	0	0	0	0.134807	2.67874	3.1088	1.5542	8.19606	0	0.738893	6.16888	5.43588	3.70668	3.83331	0	0	2.35137	2.8539	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053227 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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