TCONS_00053226 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053226
Unique NameTCONS_00053226
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2503

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053226 ID=TCONS_00053226|Name=TCONS_00053226|organism=Clytia hemisphaerica|type=transcript|length=2503bp
CAAATGGTTGCCATGATGGAGAAGATATTATTGGTTTTATTTGTCgtttt
ccggttcgcaaagtcTTTCGACGCAGGAGATACATACATCGATTGCgtca
aaacaacacaaaatcCCGCCTCGTGCTCTGCATATGAAGACGTTGGAAAG
AATTATCGAAGGTTTGATGGACTTTGCAACAATCTCAAGTTCCCAACTAT
TGGTGCTATTAACACACCTTTCAGAAGAGTACTTTcTGCAAACTATGTTG
ATCGCCGTCAAGTGGATACACCAAGAGGATTCCCTGGAACAAATCCTTCA
AACATCCCAGCTGCAAATAAAGTTTCAATAGCTGCCTTCACACCTCAATT
CGTGAATGCAGGAAATGCTGGAAAATTGTCAACATTGTTTACTACTGCTG
GACAATTCTTGGATCATGATATGGCAATTTCTCTGCATGGCAAATGCGAC
ATCAAAAACTGCAGTTCAGACTCTGCCTTCAAGTATCCATGCTTCCCAAT
CAAGTTTGATGATGACACATCTGAATGTACACCTTTCACTCGTGCTTTTG
CTGAATGCCAATTATATCCTGAACACAGAAGAACTGACAGACAACAAGTC
AACACTTTAACAGCATTTGTTGATGGATCACAAATCTATGGACATAATGA
GGCTCGGGCAAGATCATTACGACGTCTTGATGGTACTGGAAAATTGAAAA
CGCGAAGTGGAAATCTTCTACCTCTAAAGAGGTTGACAACTCCATGCGAT
CTTCTAGAAGGCTGTTCTATTGCTGGTGATATCAGAGCTGACGAAAACAT
TGCTCTACACTCAATGCATACCGTTTGGGTACGCGAACACAATAGAGTTG
TTATAGAGCTCAAACAAAATCATAATAATTGGGGTGAAGAGAAACTCTAC
CAAGAAGCTAGAAAGATTGTTAGTGCTGAATGGCAACATGTCGTTTTCAA
TGAATGGGTACCAAGAATTGTTGATCTTGGATCTTATGGTGGCTATAATT
CTGGACTGGAACCAAGAATTATCAATGCTTTCTCGACAGCTGCTTTCAGA
TTTGGTCACAGTTTAGCACCAAACGCATGGAGTCAACTTGACAATAATTT
TGAtgtgaaatttcaaaagatcagTCTTCGAGAATCTTTCTTCAATATTG
AAAGCATCAATGAGAGAGGAATTGAACCAACCATGTTAGGTCTCGTTGGA
AACCAATCAAATACAGTCGACGATATTTTTGCTTTTGGATTGCTCCGAAA
GTTATTCGTCCCGCCTGGTGAAGAAGGCCATATGGATTTGACAGCTCTCA
ACATCCAAAGAGGTCGTGACCATGGATTGCCAACGTACGGAAAATGGAGA
CAGTTTTGCAAGCTGCCAGCCATCTCGTCATTCAGGGAGCTTGAATATCA
CATGCCCGCAAGAGTTGCTAAGAAGTTCTCAATATTGTTCAATAGTCCAG
CAGATATTGATCTCTTTGCAGCTGGAATTTCAGAGAATCACGTACCAGGA
TTCCAAACAGGTCCAACATTCAAATGTTTGTTTTGGCATCAATTCAGTCG
ATTGAGAGATGGTGATCGATATTATTACCTCAATCCTGGTGTTTTCACTG
CAGAGCAGCAATCAGAATTGAAGAAAACATCAATGTCGAAAGTTTTGTGC
AACAACTTGAAAGGAATCGTGTCGATCAACAAAGATGCTTTTGTTCAGAC
AAAAGAAAAACGCACTCCATGTAATGATATCCCTGGGCCAAATCTTAATG
TGTTTTAACAACATATAATGGAAcatcaattcaattttttttttcaattt
aattctTAATTTGTATTTTAAACTACCAAAGTAAGTAACACCAAGACGAT
TCATAAGTCTTATAGGCAAAAGGCGTGTTCTTAACAAAAGAGGGTCTGCT
ACACAGATCTataaagctcgaagggctagatgtcgtgctttaagccatca
caggccaaaaaaagtgaatagCGCAAGAAATAtagttgctattgttttca
aaaatccgAGAAGCTTCTAATTGGTCAAACGCTGAAATTGTATATTATtc
tcacgtgacttaggtaggatttcctacctagatacgacacacttttcagc
acgacatctagcccttcggactttataaatctatggtctgCTAGTTTCTA
GATCTGCTATATACAGAACCGAGATAATTTAGTAGAACGATCATGGTTTT
TCAAATAAATTAGTTGAAACtaatattttcaagatttttgtaCTGAAAAT
TGACGTCATCTTAAGACGACCCAAAAAGGGTTTAAATCTTTTCGATTCAA
CTGCGGGTTTATTAGCTGTTCTTGAACCCATAAGAAACCTCTCTGTTATA
TTTCAGCTACGTATGATTTATGTTAAGGTTAGGGTCTTCTTTGAGCTAAT
TGTCTATCAGACAATTCTTGTATATCAATCGATCTAAAATTCGATACTGA
TTATTTTTAAGATATGAAactgtttttatttaatttactTAACTCGACAA
TAT
Run BLAST on NCBI

transcript from alignment at scaffold_227:377258..382271+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053226 ID=TCONS_00053226|Name=TCONS_00053226|organism=Clytia hemisphaerica|type=transcript|length=5014bp|location=Sequence derived from alignment at scaffold_227:377258..382271+ (Clytia hemisphaerica)
CAAATGGTTGCCATGATGGAGAAGATATTATTGGTTTTATTTGTCgtttt
ccggttcgcaaagtcTTTCGACGCAGGTAAGGGAATGGTTAGACAGAATG
GTGGGGTGGAAGATATTTTCTAAAAACCCAAAACAAATTCCCACCCCTTT
GATAtcctgaaaaaaatacaaacccCTCCCCACTTAACCAGTCAATATGT
ATTTTGTACCCCTCTCTATTATAGGTCACAAATATGTTCTTTAATTTGAT
TGACGGATTAACGGATTATTTGAAGCTAAGATAATAGCAGCTGCCAAAGG
CGTAGCCACAAGTTTTCGTTCGGGGAGcgagattgaaaaaaaaaagaact
tttgtTAGGGAAAATTTCTTCGAAAACTTTTCTTTTAACTTAAGCCCCGC
AGGCGAAAAGTTTTGCTCTAAGAAAGCTCAAATAGCATCAAAAGGGCTTG
AAAAGGTTTAAGTTAGCGAGAGAAAAGCtaaagaaaagtaaagaaagCAT
GGAGACACCCCCCCCCACCTAAGGGTGGGAAAAGATTTTTGCGAGAATTC
AATAAACCTGCAAGAGCCTTAAATTCCACAGGGTGTGTCACTAAAAGCTG
AACCTCCTCATCAATGTAAAACAAATTGAAAGTCTATGAGATCTAAATTT
CCAATAGTCCAGAAAATCATACAAGcttcttaagaaacatttaaaaatca
aatcatttcGTTCCAGGAGATACATACATCGATTGCgtcaaaacaacaca
aaatcCCGCCTCGTGCTCTGCATATGAAGACGTTGGAAAGAATTATCGAA
GGTTTGATGGACTTTGCAACAATCTCAAGTTCCCAACTATTGGTGCTATT
AACACACCTTTCAGAAGAGTACTTTGTAAGTAATGCATAATGCAATTTTT
GACCAGCAATAAAATATGGAGCTACTTATCGAAAGTTAGACCCAAAAATA
AAACCCAAAGCtgacatcaaaattttttcaaatgtttttcaatcTTGAAA
CTCTGCAATTATATCCAATTATATCCATATTtgcaattttggctatttta
ccacttttcaaaaattgaagtttgaGCGAGTCAATTTCGGGCCGCTTCAA
CTTGATtccattgattatttcgatctgggaaaGATTTATTGGTTCTACTG
GACCATcattgaacttttggatcctgagatcctaaggtcctaactCTGAA
GTCTAGCATTAAAACTCAGAGtgaaaactctacccttccaacctaattta
gagcgcttcaaaattgtttgtggttataaaatttcgggggggatttccct
tttgtgccaagtattttgtcactgatggTAGATAGTTTACCGCTCTTTAT
ATCTAAAACCCATTAAAGCCGTTCAAAATTGTCTTCGTTGAATTAtcata
aacaaaattttaacttttagcTGCAAACTATGTTGATCGCCGTCAAGTGG
ATACACCAAGAGGATTCCCTGGAACAAATCCTTCAAACATCCCAGCTGCA
AATAAAGTTTCAATAGCTGCCTTCACACCTCAATTCGTGAATGCAGGAAA
TGCTGGAAAATTGTCAACATTGTTTACTACTGCTGGACAATTCTTGGATC
ATGATATGGCAATTTCTCTGCATGGCAAATGCGACATCAAAAAGTAAGAA
CTACTAGTTTCGacttagactagtaaaccacgtcgttgtatttcgctgca
gaatagactttcaatgggatctatttttttttatgttcactgaatccaat
ccactctcccgcggcaatttctattttttataagaactctttattataag
cactattcccgcgttcctgtgtccaaggaaagacagacgcttgctagtct
agtTTCGACTGGATTCTTTTTGCGTTCTTTTTGCCTcgttttaagcattt
taaagttcgggcgagaaagttgcTTTTGGGCTGTTTGTTGAAtttaattg
aatatttcaatttgggtggggtttatagacttccaggccaTAATATGAGC
CATAATGGACTGTTCTTAAACGTTTGGATCCCaagctcctaagtcttaag
tttcatgttaaaactcagagttacgGAACGTTACAGTTCCAACCTAACTT
ATAGGGCATCCATGTCTCTTGTCGTAGCAAAAATGTGTAACTTCTCAATG
TTTTATTTGAAAGATTCGTGTATTCACTTTCTATCTTGATTACAGCTGCA
GTTCAGACTCTGCCTTCAAGTATCCATGCTTCCCAATCAAGTTTGATGAT
GACACATCTGAATGTACACCTTTCACTCGTGCTTTTGCTGAATGCCAATT
ATATCCTGAACACAGAAGAACTGACAGACAACAAGTCAACACTTTAACAG
CATTTGTTGATGGATCACAAATCTATGGACATAATGAGGCTCGGGCAAGA
TCATTACGACGTCTTGATGGTAAGTGACTGTAAAAATTAAGGCGAAACAT
TATGttaaaaaatgcattttcatAAATCAAAATATACAAAGAGAAAGGCA
CTATAAGAATCTGTAAATTATATACGACATGTGGAAAATCAGTAGGAACT
ATTGATATAAGACTGACAACtgccaaatatctcaaaagTTTCAAATGCCT
TGAAAgtaacatccccttctcacagaccaggTGGGATTTCATCAGCTAGT
GGGGGTAAAAAGTGGGCctaaactcgatggggattgatattccccgTGTT
TTTTTATGACTGAGGATTTCAATTATATTGTTTTCTAGCCTGAAAATTCG
GTGGGGCTGGAAAAATAGCATGATACTTTGCaatgaggatttgcttatct
gattatttcaGCGAGGAAAAATAGGGGggagtgggtttaccaactacggt
atgtgcggcgaaaagattggcttttagaattgcacccttacagtgcagaa
agaATCgttgaaattcatacccttacattgcattttttcaaactctttta
gagcaaaaagatcaagatttttgagcaaaaatttagaatttttcctagat
ttgaTGAAATTGTcacccatacagtgcatttatcaaaagtccacccttac
agtgcatttctgatattttgaaaaacatacccttaaccaccgcacatacc
cgtcggtcaatttgcctgactgcgcCCCCGGGCAGTAGGTCTGTGGAACG
GGGTGCAACGTCTATTTCTTTATCAATTACCATTTATTCACAGGTACTGG
AAAATTGAAAACGCGAAGTGGAAATCTTCTACCTCTAAAGAGGTTGACAA
CTCCATGCGATCTTCTAGAAGGCTGTTCTATTGCTGGTGATATCAGAGCT
GACGAAAACATTGCTCTACACTCAATGCATACCGTTTGGGTACGCGAACA
CAATAGAGTTGTTATAGAGCTCAAACAAAATCATAATAATTGGGGTGAAG
AGAAACTCTACCAAGAAGCTAGAAAGATTGTTAGTGCTGAATGGCAACAT
GTCGTTTTCAATGAATGGGTACCAAGAATTGTTGATCTTGGATCTTATGG
TGGCTATAATTCTGGACTGGAACCAAGAATTATCAATGCTTTCTCGACAG
CTGCTTTCAGATTTGGTCACAGTTTAGCACCAAACGCATGGAGTCAACTT
GACAATAATTTTGAtgtgaaatttcaaaagatcagTCTTCGAGAATCTTT
CTTCAATATTGAAAGCATCAATGAGAGAGGAATTGAACCAACCATGTTAG
GTCTCGTTGGAAACCAATCAAATACAGTCGACGATATTTTTGCTTTTGGA
TTGCTCCGAAAGTTATTCGTCCCGCCTGGTGAAGAAGGCCATATGGATTT
GACAGCTCTCAACATCCAAAGAGGTCGTGACCATGGATTGCCAACGTACG
GAAAATGGAGACAGTTTTGCAAGCTGCCAGCCATCTCGTCATTCAGGGAG
CTTGAATATCACATGCCCGCAAGAGTTGCTAAGAAGTTCTCAATATTGTT
CAATAGTCCAGCAGATATTGATCTCTTTGCAGCTGGAATTTCAGAGAATC
ACGTACCAGGATTCCAAACAGGTCCAACATTCAAATGTTTGTTTTGGCAT
CAATTCAGTCGATTGAGAGATGGTGATCGATATTATTACCTCAATCCTGG
TGTTTTCACTGCAGAGCAGCAATCAGAATTGAAGAAAACATCAATGTCGA
AAGTTTTGTGCAACAACTTGAAAGGAATCGTGTCGATCAACAAAGATGCT
TTTGTTCAGACAAAAGAAAAACGCACTCCATGTAATGATATCCCTGGGCC
AAATCTTAATGTGTTTTAACAACATATAATGGAAcatcaattcaattttt
tttttcaatttaattctTAATTTGTATTTTAAACTACCAAAGTAAGTAAC
ACCAAGACGATTCATAAGTCTTATAGGCAAAAGGCGTGTTCTTAACAAAA
GAGGGTCTGCTACACAGATCTataaagctcgaagggctagatgtcgtgct
ttaagccatcacaggccaaaaaaagtgaatagCGCAAGAAATAtagttgc
tattgttttcaaaaatccgAGAAGCTTCTAATTGGTCAAACGCTGAAATT
GTATATTATtctcacgtgacttaggtaggatttcctacctagatacgaca
cacttttcagcacgacatctagcccttcggactttataaatctatggtct
gCTAGTTTCTAGATCTGCTATATACAGAACCGAGATAATTTAGTAGAACG
ATCATGGTTTTTCAAATAAATTAGTTGAAACtaatattttcaagattttt
gtaCTGAAAATTGACGTCATCTTAAGACGACCCAAAAAGGGTTTAAATCT
TTTCGATTCAACTGCGGGTTTATTAGCTGTTCTTGAACCCATAAGAAACC
TCTCTGTTATATTTCAGCTACGTATGATTTATGTTAAGGTTAGGGTCTTC
TTTGAGCTAATTGTCTATCAGACAATTCTTGTATATCAATCGATCTAAAA
TTCGATACTGATTATTTTTAAGATATGAAactgtttttatttaatttact
TAACTCGACAATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033595XLOC_033595Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053226-exon-scaffold_227-1491911889:377258..377333TCONS_00053226-exon-scaffold_227-1491911889:377258..377333Clytia hemisphaericaexon
TCONS_00053226-exon-scaffold_227-1510915933:377258..377333TCONS_00053226-exon-scaffold_227-1510915933:377258..377333Clytia hemisphaericaexon
TCONS_00053226-exon-scaffold_227-1575043694:377258..377333TCONS_00053226-exon-scaffold_227-1575043694:377258..377333Clytia hemisphaericaexon
TCONS_00053226-exon-scaffold_227-1491911889:377974..378132TCONS_00053226-exon-scaffold_227-1491911889:377974..378132Clytia hemisphaericaexon
TCONS_00053226-exon-scaffold_227-1510915933:377974..378132TCONS_00053226-exon-scaffold_227-1510915933:377974..378132Clytia hemisphaericaexon
TCONS_00053226-exon-scaffold_227-1575043694:377974..378132TCONS_00053226-exon-scaffold_227-1575043694:377974..378132Clytia hemisphaericaexon
TCONS_00053226-exon-scaffold_227-1491911889:378678..378900TCONS_00053226-exon-scaffold_227-1491911889:378678..378900Clytia hemisphaericaexon
TCONS_00053226-exon-scaffold_227-1510915933:378678..378900TCONS_00053226-exon-scaffold_227-1510915933:378678..378900Clytia hemisphaericaexon
TCONS_00053226-exon-scaffold_227-1575043694:378678..378900TCONS_00053226-exon-scaffold_227-1575043694:378678..378900Clytia hemisphaericaexon
TCONS_00053226-exon-scaffold_227-1491911889:379453..379676TCONS_00053226-exon-scaffold_227-1491911889:379453..379676Clytia hemisphaericaexon
TCONS_00053226-exon-scaffold_227-1510915933:379453..379676TCONS_00053226-exon-scaffold_227-1510915933:379453..379676Clytia hemisphaericaexon
TCONS_00053226-exon-scaffold_227-1575043694:379453..379676TCONS_00053226-exon-scaffold_227-1575043694:379453..379676Clytia hemisphaericaexon
TCONS_00053226-exon-scaffold_227-1491911889:380451..382271TCONS_00053226-exon-scaffold_227-1491911889:380451..382271Clytia hemisphaericaexon
TCONS_00053226-exon-scaffold_227-1510915933:380451..382271TCONS_00053226-exon-scaffold_227-1510915933:380451..382271Clytia hemisphaericaexon
TCONS_00053226-exon-scaffold_227-1575043694:380451..382271TCONS_00053226-exon-scaffold_227-1575043694:380451..382271Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_227supercontigscaffold_227:377258..382271 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0524228	0.188072	0.0646855	0.0632847	0	0	0	0	0	0	0	0	19.8741	12.8768	2.81705	5.11384	1.07805	4.11198	17.5764	70.7448	0	0	0	0	0	0	0.0783366	0.0836029	0.0261704	0
Blast
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BLAST of TCONS_00053226 vs. Swiss-Prot (Human)
Match: PXDN (Peroxidasin homolog OS=Homo sapiens GN=PXDN PE=1 SV=2)

HSP 1 Score: 326.25 bits (835), Expect = 7.958e-95
Identity = 216/608 (35.53%), Postives = 311/608 (51.15%), Query Frame = 1 
Query:  112 NPASCSAYEDVG--------KNYRRFDGLCNNLKFPTIGAINTPFRRVLSANYVDRRQVDTPRGFPGTNPSNI------PAANKVSIAAFTPQFVNAGNAGKLSTLFTTAGQFLDHDM-----AISLHGKCDIKNCSSDSAFKYPCFPIKFDDDTSE------CTPFTRAFAEC----------QLYPEHRRTDRQQVNTLTAFVDGSQIYGHNEARARSLRRLDG-TGKLKT----RSGN-LLPLKR-LTTPCDLLEG-----CSIAGDIRADENIALHSMHTVWVREHNRVVIELKQNHNNWGEEKLYQEARKIVSAEWQHVVFNEWVPRIV------DLGSYGGYNSGLEPRIINAFSTAAFRFGHSLAPNAWSQLDNNFD-VKFQKISLRESFFN-IESINERGIEPTMLGLVG--NQSNTVDDIFAFGLLRKLFVPPGEEGHMDLTALNIQRGRDHGLPTYGKWRQFCKLPAISSFRELEYHMP-ARVAKKFSILFNSPADIDLFAAGISENHVPGFQTGPTFKCLFWHQFSRLRDGDRYYYLNPGVFTAEQQSELKKTSMSKVLCNNLKGIVSINKDAF--VQTKEKRTPCNDIPGPNLNVF 1755
            N + C+A+  V         + YR  DG CNNL+ P  GA  T F R+L + Y      +TPRG    NP  +      P    VS      + V      + + +    GQFLDHD+     A+S     D ++CS+  +   PCF +    + S       C  F R+   C           +YP      R+Q+N LT+++D S +YG  E  ARS+R L    G L+     RSG  LLP      T C   E      C +AGD RA+E + L SMHT+W REHNR+  EL + + +W  + +Y E RKIV AE QH+ +  W+P+I+       LG Y GY+ G+   I NAF+TAAFRFGH+L      +LD NF  +    + L ++FF+    +NE GI+P + GL G   +      +    L  +LF        +DL A+NIQRGRDHG+P Y  +R +C L A  +F +L+  +    + +K   L+ S  +IDLF A + E+ VPG + GPT  CL   QF RLRDGDR +Y NPGVF+  Q +++K+TS++++LC+N   I  +  D F   +       C++IP  +L V+
Sbjct:  719 NLSGCTAHRRVNNCSDMCFHQKYRTHDGTCNNLQHPMWGASLTAFERLLKSVY--ENGFNTPRGI---NPHRLYNGHALPMPRLVSTTLIGTETVTPDE--QFTHMLMQWGQFLDHDLDSTVVALSQARFSDGQHCSNVCSNDPPCFSVMIPPNDSRARSGARCMFFVRSSPVCGSGMTSLLMNSVYP------REQINQLTSYIDASNVYGSTEHEARSIRDLASHRGLLRQGIVQRSGKPLLPFATGPPTECMRDENESPIPCFLAGDHRANEQLGLTSMHTLWFREHNRIATELLKLNPHWDGDTIYYETRKIVGAEIQHITYQHWLPKILGEVGMRTLGEYHGYDPGINAGIFNAFATAAFRFGHTLVNPLLYRLDENFQPIAQDHLPLHKAFFSPFRIVNEGGIDPLLRGLFGVAGKMRVPSQLLNTELTERLF-SMAHTVALDLAAINIQRGRDHGIPPYHDYRVYCNLSAAHTFEDLKNEIKNPEIREKLKRLYGSTLNIDLFPALVVEDLVPGSRLGPTLMCLLSTQFKRLRDGDRLWYENPGVFSPAQLTQIKQTSLARILCDNADNITRVQSDVFRVAEFPHGYGSCDEIPRVDLRVW 1312
The following BLAST results are available for this feature:
BLAST of TCONS_00053226 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PXDN7.958e-9535.53Peroxidasin homolog OS=Homo sapiens GN=PXDN PE=1 S... [more]
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