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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053205 ID=TCONS_00053205|Name=TCONS_00053205|organism=Clytia hemisphaerica|type=transcript|length=2447bp
CAAGTCTCACGTTAATTATACCATTAAATACCCAAAATGAATCAATCGCT
TTTTCATTATAAAGACATTTAACTTTTCCCCAGAGAAATCTGTAATAGCT
GCAGAGATTTATAtagattttttcagttaaatttgctttttcaaaaGCAT
CACGTCTCTTAAATTCTTTCCCTTTCTTGATAAGATTTTCAGCAAGTTTT
CTGTTGACAAATCTAACTATAGTACGTTTTGGACCATGCTGATTTCGACT
TTGATATAAACGGTGACAAGCCTCGATTTCCTTCGGACATATTTCAATGT
TTACAGCTTTCCCAATTTCGATAACTTTTGATTCTAGATCACATTGTTTT
ACTGAATCTGGTATACCAATAATTTCAACATTATTCCATCGTATATACTG
CtgcatttcatttttttctctttctagcTTTACAATGTCGTTTAAATCAG
CCTTGGAATTCGCAACTCGATCTAATTTAGTCTGCAAACACTCGATGACT
TCAGATTTTGTTGAAAGTTCTTGTTTGAGATTATCTACTTCTGTTTTGAG
TGACAGGTTTCGTTTTGTAGTTGAATCAAAATATCATCTTTGATTTCTTG
CATTTTCTTATTAATGTCATACCTTATAACTTTCATCtcgtaaaaaatca
tttcaagTGTGATTTCTTTCATAGGATCTTCATCAAAACGTATCATTGTA
GAAGCAGGAGGTTGAGAAATTGAGTCATGGAATATATCCCCATCAGGAGC
ATCTTTATGTGTTCTTTTGTTGATTGTGTTGATTGAGTAGTGTATTCAGG
AATATCAGCAAGTATTTCCTCCATATCAGCTTGTTGATGCTGTTTTCTTG
TTGTTACAGGCATTTTGGCTCGAGAAACAACGCCTACTTTTTACGCGCCA
AAAATCTTGAAGACACGTCTTACCTCAGCGAATACCGAAATGCGAATGAC
CCACTCATTATTCTCACACCCATAGACCGTACGGCTACTTCAATTTAATA
GTTGCCCATAGTTGCCCACCGGCCCACCACAACAGACGACCTGTTTTGCG
AAACTTTTCCTGTGAAATCTAGATTTGCATGAAAGACTAGGATTTTTTAA
TAGATCCTTTTTAGAATTTGCAGAACATTACAATACAGCGAGCTttacat
tttcttcttcaaggGGTTGCAAAGCATGTCTTCACGGTGTGGATAGAAGG
AAAAACGCTGCCGAAGGAAAAATTTGCGTCAAGGTACGCTAAAGATTCCG
TTTGATCTTGGTCGTATTACGAAAACGGTGTGTAGAAAATTACAGCACGA
TGAAGGCCGACGAGTGGAAGCACTGGACCATGGTCTACTCTCTCTATTGT
TTGAAAAGTGTCCTCCCACGAACAGATTACGAAATATGGAAAAAGTTTGT
TATGACGTGCCACAAATTATGCAGACCAGTTATCAAATGGCAAGATGTGG
TTGATGCTCACGAATTATTCGTTGAGTTCTGTAACGAATTTAAAGAAAGA
TACAGCAATTCCAATCTAGTACCGAACCTTCATATGATGCTTCACATCAA
AAAGTGCATTGCAGACTTTGGACCCATCTATGCCTTCTGGTTTTTTGGGT
TTGAAAGgtACAACGGCACTCTAGGATCCTTCCAGACTAATGGACATTCA
ATATCGATACAATTGATGCGAAAATTTGTAAGCAtgtcaaaagatgaaaa
tgccGATGATGATGACAATCTTGAACAAGTCACCCTAGCAGACTTCAACC
ACACCGATGCTGTTCGTATTTTGGAAGCTgaagtcattgacgagagttcA
TTCCAGCAGCAGTTCGAGGTATTGAGATCCAAAGCCCATAGAGTAACTTT
CGACAGCGAAGACCTCCACgatttaaagagaatgtttAAATCGTACTGCA
ATATGAAAGGTATTACAACAATTTCAACATCTGGCAAAAGTGCTTAAGTT
GTTGCTTTTGGAAACCAAGTTTACGCTTGTAATCGATATCGTGGCTCTTC
GCCATACAGCTATGTAATTGCTCGGTGGCACTCAAAGGAAAACAAGAAAG
AGTTTCGCCCTGCAGTAATCCAGGATTCGTTTGAAATCGAAGCATCTGGA
GATGacacgaagatgaaaatattttgggtCGCTCGTCTCAAATGGTTCAA
AGAAGTCGAGCCAGCGAGTGATAAATTTCATTATGGCAATAATGCACATT
TAACCTTGTGGGACACACAGTATATCACACCAGATAAAAACACATACATT
CCCGTACGATTTATTAAAAGCCGCTTTGTTTACAGGCATGAAGAGATGAA
GCTGAAAGAAGGACGAAAGACTGTAACCATAGCAATAGAACTACCTTTTC
agtcttttttgtaattttcctgATTTAATTCTTTAAATGCCATCACTTCC
TAACCTTCcattttaaaatattatctGATTTCAAATGTACGTACACG Run BLAST on NCBI protein sequence of TCONS_00053205-protein >TCONS_00053205-protein ID=TCONS_00053205-protein|Name=TCONS_00053205-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
MKADEWKHWTMVYSLYCLKSVLPRTDYEIWKKFVMTCHKLCRPVIKWQDV
VDAHELFVEFCNEFKERYSNSNLVPNLHMMLHIKKCIADFGPIYAFWFFG
FERYNGTLGSFQTNGHSISIQLMRKFVSMSKDENADDDDNLEQVTLADFN
HTDAVRILEAEVIDESSFQQQFEVLRSKAHRVTFDSEDLHDLKRMFKSYC
NMKGITTISTSGKSA Run BLAST on NCBI transcript from alignment at scaffold_227:155693..158660+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053205 ID=TCONS_00053205|Name=TCONS_00053205|organism=Clytia hemisphaerica|type=transcript|length=2968bp|location=Sequence derived from alignment at scaffold_227:155693..158660+ (Clytia hemisphaerica)
CAAGTCTCACGTTAATTATACCATTAAATACCCAAAATGAATCAATCGCT
TTTTCATTATAAAGACATTTAACTTTTCCCCAGAGAAATCTGTAATAGCT
GCAGAGATTTATAtagattttttcagttaaatttgctttttcaaaaGCAT
CACGTCTCTTAAATTCTTTCCCTTTCTTGATAAGATTTTCAGCAAGTTTT
CTGTTGACAAATCTAACTATAGTACGTTTTGGACCATGCTGATTTCGACT
TTGATATAAACGGTGACAAGCCTCGATTTCCTTCGGACATATTTCAATGT
TTACAGCTTTCCCAATTTCGATAACTTTTGATTCTAGATCACATTGTTTT
ACTGAATCTGGTATACCAATAATTTCAACATTATTCCATCGTATATACTG
CtgcatttcatttttttctctttctagcTTTACAATGTCGTTTAAATCAG
CCTTGGAATTCGCAACTCGATCTAATTTAGTCTGCAAACACTCGATGACT
TCAGATTTTGTTGAAAGTTCTTGTTTGAGATTATCTACTTCTGTTTTGAG
TGACAGGTTTCGTTTTGTAGTTGAATCAAAATATCATCTTTGATTTCTTG
CATTTTCTTATTAATGTCATACCTTATAACTTTCATCtcgtaaaaaatca
tttcaagTGTGATTTCTTTCATAGGATCTTCATCAAAACGTATCATTGTA
GAAGCAGGAGGTTGAGAAATTGAGTCATGGAATATATCCCCATCAGGAGC
ATCTTTATGTGTTCTTTTGTTGATTGTGTTGATTGAGTAGTGTATTCAGG
AATATCAGCAAGTATTTCCTCCATATCAGCTTGTTGATGCTGTTTTCTTG
TTGTTACAGGCATTTTGGCTCGAGAAACAACGCCTACTTTTTACGCGCCA
AAAATCTTGAAGACACGTCTTACCTCAGCGAATACCGAAATGCGAATGAC
CCACTCATTATTCTCACACCCATAGACCGTACGGCTACTTCAATTTAATA
GTTGCCCATAGTTGCCCACCGGCCCACCACAACAGACGACCTGTTTTGCG
AAACTTTTCCTGTGAAATCTAGATTTGCATGAAAGACTAGGATTTTTTAA
TAGATCCTTTTTAGAATTTGCAGAACATTACAATACAGCGAGCTttacat
tttcttcttcaaggGGTTGCAAAGCATGTCTTCACGGTGTGGATAGAAGG
AAAAACGCTGCCGAAGGAAAAATTTGCGTCAAGGTACGCTAAAGATTCCG
TTTGATCTTGGTCGTATTACGAAAACGGTGTGTAGAAAATTACAGCACGA
TGAAGGCCGACGAGTGGAAGCACTGGACCATGGTCTACTCTCTCTATTGT
TTGAAAAGTGTCCTCCCACGAACAGATTACGAAATATGGAAAAAGTTTGT
TATGACGTGCCACAAATTATGCAGACCAGTTATCAAATGGCAAGATGTGG
TTGATGCTCACGAATTATTCGTTGAGTTCTGTAACGAATTTAAAGAAAGA
TACAGCAATTCCAATCTAGTACCGAACCTTCATATGATGCTTCACATCAA
AAAGTGCATTGCAGACTTTGGACCCATCTATGCCTTCTGGTTTTTTGGGT
TTGAAAGGTACTTTTGTTCTAGTATTTTTGAACCGTTTCATCAGTTATAC
CTCTCTGTTTTAAACATTTTCGTAACACCTAATTCTAAGACCCCGCCTAA
TCCTAGTCATGATGTATGTATCAAGGTAATTTAGCCTAATTTGTCTAATT
CGCACGAACATCTACTTCAATCAGGTTCTCTGGTATCTATCAATTGTCTT
ATGTGAACACATATTTTTTAAGCAACTTTTCGGGTCCTGTCTGAGTTGCT
TAGGCATTCTGgcacattttctgaaaaatttgtaGCTTTTCCAGCTGTAT
TTGTCCACCCCTAATATTATACCATGTTTATGCTTATTAGGTCAAGGGCT
ATGGTTTGCCATAGTTAGagtatctaaaaagcttttactttacggGAAGT
GAAAATAAATTTGAGGCCTCTTAGCAACCTGgctgcttataaagaaaaaa
aagtatcTGCTTTTGACCCTTGAAAAAATATGCTTTCTGAGTTTCCAATA
ATTATTGCAcgcttatttttgttttcaggtACAACGGCACTCTAGGATCC
TTCCAGACTAATGGACATTCAATATCGATACAATTGATGCGAAAATTTGT
AAGCAtgtcaaaagatgaaaatgccGATGATGATGACAATCTTGAACAAG
TCACCCTAGCAGACTTCAACCACACCGATGCTGTTCGTATTTTGGAAGCT
gaagtcattgacgagagttcATTCCAGCAGCAGTTCGAGGTATTGAGATC
CAAAGCCCATAGAGTAACTTTCGACAGCGAAGACCTCCACgatttaaaga
gaatgtttAAATCGTACTGCAATATGAAAGGTATTACAACAATTTCAACA
TCTGGCAAAAGTGCTTAAGTTGTTGCTTTTGGAAACCAAGTTTACGCTTG
TAATCGATATCGTGGCTCTTCGCCATACAGCTATGTAATTGCTCGGTGGC
ACTCAAAGGAAAACAAGAAAGAGTTTCGCCCTGCAGTAATCCAGGATTCG
TTTGAAATCGAAGCATCTGGAGATGacacgaagatgaaaatattttgggt
CGCTCGTCTCAAATGGTTCAAAGAAGTCGAGCCAGCGAGTGATAAATTTC
ATTATGGCAATAATGCACATTTAACCTTGTGGGACACACAGTATATCACA
CCAGATAAAAACACATACATTCCCGTACGATTTATTAAAAGCCGCTTTGT
TTACAGGCATGAAGAGATGAAGCTGAAAGAAGGACGAAAGACTGTAACCA
TAGCAATAGAACTACCTTTTCagtcttttttgtaattttcctgATTTAAT
TCTTTAAATGCCATCACTTCCTAACCTTCcattttaaaatattatctGAT
TTCAAATGTACGTACACG Coding sequence (CDS) from alignment at scaffold_227:155693..158660+ >TCONS_00053205 ID=TCONS_00053205|Name=TCONS_00053205|organism=Clytia hemisphaerica|type=CDS|length=1296bp|location=Sequence derived from alignment at scaffold_227:155693..158660+ (Clytia hemisphaerica)
ATGAAGGCCGACGAGTGGAAGCACTGGACCATGGTCTACTCTCTCTATTG
TTTGAAAAGTGTCCTCCCACGAACAGATTACGAAATATGGAAAAAGTTTG
TTATGACGTGCCACAAATTATGCAGACCAGTTATCAAATGGCAAGATGTG
GTTGATGCTCACGAATTATTCGTTGAGTTCTGTAACGAATTTAAAGAAAG
ATACAGCAATTCCAATCTAGTACCGAACCTTCATATGATGCTTCACATCA
AAAAGTGCATTGCAGACTTTGGACCCATCTATGCCTTCTGGTTTTTTGGG
TTTGAAAGgtACAACGGCACTCTAGGATCCTTCCAGACTAATGGACATTC
AATATCGATACAATTGATGCGAAAATTTGTAAGCAtgtcaaaagatgaaa
atgccGATGATGATGACAATCTTGAACAAGTCACCCTAGCAGACTTCAAC
CACACCGATGCTGTTCGTATTTTGGAAGCTgaagtcattgacgagagttc
ATTCCAGCAGCAGTTCGAGGTATTGAGATCCAAAGCCCATAGAGTAACTT
TCGACAGCGAAGACCTCCACgatttaaagagaatgtttAAATCGTACTGC
AATATGAAAGGTATTACAACAATTTCAACATCTGGCAAAAGTGCTTAAAT
GAAGGCCGACGAGTGGAAGCACTGGACCATGGTCTACTCTCTCTATTGTT
TGAAAAGTGTCCTCCCACGAACAGATTACGAAATATGGAAAAAGTTTGTT
ATGACGTGCCACAAATTATGCAGACCAGTTATCAAATGGCAAGATGTGGT
TGATGCTCACGAATTATTCGTTGAGTTCTGTAACGAATTTAAAGAAAGAT
ACAGCAATTCCAATCTAGTACCGAACCTTCATATGATGCTTCACATCAAA
AAGTGCATTGCAGACTTTGGACCCATCTATGCCTTCTGGTTTTTTGGGTT
TGAAAGgtACAACGGCACTCTAGGATCCTTCCAGACTAATGGACATTCAA
TATCGATACAATTGATGCGAAAATTTGTAAGCAtgtcaaaagatgaaaat
gccGATGATGATGACAATCTTGAACAAGTCACCCTAGCAGACTTCAACCA
CACCGATGCTGTTCGTATTTTGGAAGCTgaagtcattgacgagagttcAT
TCCAGCAGCAGTTCGAGGTATTGAGATCCAAAGCCCATAGAGTAACTTTC
GACAGCGAAGACCTCCACgatttaaagagaatgtttAAATCGTACTGCAA
TATGAAAGGTATTACAACAATTTCAACATCTGGCAAAAGTGCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053205-exon-scaffold_227-1491911889:155693..157299 | TCONS_00053205-exon-scaffold_227-1491911889:155693..157299 | Clytia hemisphaerica | exon |
| TCONS_00053205-exon-scaffold_227-1510915933:155693..157299 | TCONS_00053205-exon-scaffold_227-1510915933:155693..157299 | Clytia hemisphaerica | exon |
| TCONS_00053205-exon-scaffold_227-1575043694:155693..157299 | TCONS_00053205-exon-scaffold_227-1575043694:155693..157299 | Clytia hemisphaerica | exon |
| TCONS_00053205-exon-scaffold_227-1491911889:157821..158660 | TCONS_00053205-exon-scaffold_227-1491911889:157821..158660 | Clytia hemisphaerica | exon |
| TCONS_00053205-exon-scaffold_227-1510915933:157821..158660 | TCONS_00053205-exon-scaffold_227-1510915933:157821..158660 | Clytia hemisphaerica | exon |
| TCONS_00053205-exon-scaffold_227-1575043694:157821..158660 | TCONS_00053205-exon-scaffold_227-1575043694:157821..158660 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_227 | supercontig | scaffold_227:155693..158660 + |
Blast
The following BLAST results are available for this feature:
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