TCONS_00053203 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053203
Unique NameTCONS_00053203
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length772

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053203 ID=TCONS_00053203|Name=TCONS_00053203|organism=Clytia hemisphaerica|type=transcript|length=772bp
GTGAATGGTGTAGCTGTTTTTCCTCGTAACTTTCGACACGAAACACAATT
AAAAATCACCCTTTTACATAAGGAATTCAGATGCAAAATCCACAAACCAG
CTTGTCGAATGGCATTAAGAGTGATACCTCTACCAGCATGGAATACCTTC
TcatgataaaacaaaacaattttttcagaTAAAGGTGAATCTTTCGGAAG
AATAATAGGATGTTTCTCATCAAAGGCCAAACTTGAATGCTTTAAACGAC
CACCAACTCTTAGAATTCCTCTATGATCAAGAAAAGGATTCAGAGAACAC
AATTTTATATCCTTTCTACCTGTTTTCACAGCGTTGATGCTTTCagcaaa
ataaaaagtttggACCATTTTTACCAAAGAAACAAAGGACTCAGCAATAT
CCTGAGATGTCAAGGCGTACACCTTGTCAGATTGATGACGTAACTTCATT
TGATGAATTCTACCCCTACGTAACTTAAGTCTTTGGATATAAAGAAGAAT
GTAAGCTAAAACACGTTTCATTTTGGCAAATGAAGAAATATTGCTTTCAA
AATAAGAAACAATACGATTATCAAGTGGCTTCTTAATCACATAACAGGAA
ACGTTTGCTTTCAATTCAACATCATCTTCAGACAGTGGGAAAGATTCTTC
AACAAGAGGAAGATTCAACTCACGTAAAAAGCTAGGACCATTGAACCAAA
GATCTTCACTATCCTTACCGGCTCTCAAACCTCTAGCACCACAGTCTGCA
GGATTTGACTTAGAATCGACNN
Run BLAST on NCBI

transcript from alignment at scaffold_227:141556..142327+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053203 ID=TCONS_00053203|Name=TCONS_00053203|organism=Clytia hemisphaerica|type=transcript|length=772bp|location=Sequence derived from alignment at scaffold_227:141556..142327+ (Clytia hemisphaerica)
GTGAATGGTGTAGCTGTTTTTCCTCGTAACTTTCGACACGAAACACAATT
AAAAATCACCCTTTTACATAAGGAATTCAGATGCAAAATCCACAAACCAG
CTTGTCGAATGGCATTAAGAGTGATACCTCTACCAGCATGGAATACCTTC
TcatgataaaacaaaacaattttttcagaTAAAGGTGAATCTTTCGGAAG
AATAATAGGATGTTTCTCATCAAAGGCCAAACTTGAATGCTTTAAACGAC
CACCAACTCTTAGAATTCCTCTATGATCAAGAAAAGGATTCAGAGAACAC
AATTTTATATCCTTTCTACCTGTTTTCACAGCGTTGATGCTTTCagcaaa
ataaaaagtttggACCATTTTTACCAAAGAAACAAAGGACTCAGCAATAT
CCTGAGATGTCAAGGCGTACACCTTGTCAGATTGATGACGTAACTTCATT
TGATGAATTCTACCCCTACGTAACTTAAGTCTTTGGATATAAAGAAGAAT
GTAAGCTAAAACACGTTTCATTTTGGCAAATGAAGAAATATTGCTTTCAA
AATAAGAAACAATACGATTATCAAGTGGCTTCTTAATCACATAACAGGAA
ACGTTTGCTTTCAATTCAACATCATCTTCAGACAGTGGGAAAGATTCTTC
AACAAGAGGAAGATTCAACTCACGTAAAAAGCTAGGACCATTGAACCAAA
GATCTTCACTATCCTTACCGGCTCTCAAACCTCTAGCACCACAGTCTGCA
GGATTTGACTTAGAATCGACNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033585XLOC_033585Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053203-exon-scaffold_227-1491911889:141556..142327TCONS_00053203-exon-scaffold_227-1491911889:141556..142327Clytia hemisphaericaexon
TCONS_00053203-exon-scaffold_227-1510915933:141556..142327TCONS_00053203-exon-scaffold_227-1510915933:141556..142327Clytia hemisphaericaexon
TCONS_00053203-exon-scaffold_227-1575043694:141556..142327TCONS_00053203-exon-scaffold_227-1575043694:141556..142327Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_227supercontigscaffold_227:141556..142327 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.3086	17.8873	4.72585	2.43342	2.36997	1.40459	1.37728	2.50294	1.06204	0.591978	1.65992	0.587552	0.712464	0.870472	1.28816	1.6512	0.412276	0.775786	0.267948	0	0.849581	0.534925	9.44537	6.75528	0.608913	0.841984	0.25922	0.553294	3.35723	3.99057
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053203 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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