TCONS_00053197 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053197
Unique NameTCONS_00053197
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length208

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053197 ID=TCONS_00053197|Name=TCONS_00053197|organism=Clytia hemisphaerica|type=transcript|length=208bp
GAATGGTATAAGAAATGATATAGTATAAGAAATGATATGGTCGCtgacat
ttaaaaaaacattcaaatcgTTTGAAGGAGTGTGCAAAAATAAAGTTAAG
CTGGTACAGTTTTTGTTTTACATCATTTTATGATCAGAACCTGTCAATTG
TTGATGCTcaaaagatcttcattttttcagcattttgctACTCATACGGA
TTTATAGG
Run BLAST on NCBI

transcript from alignment at scaffold_226:575211..575418

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053197 ID=TCONS_00053197|Name=TCONS_00053197|organism=Clytia hemisphaerica|type=transcript|length=208bp|location=Sequence derived from alignment at scaffold_226:575211..575418 (Clytia hemisphaerica)
CCTATAAATCCGTATGAGTagcaaaatgctgaaaaaatgaagatcttttg
AGCATCAACAATTGACAGGTTCTGATCATAAAATGATGTAAAACAAAAAC
TGTACCAGCTTAACTTTATTTTTGCACACTCCTTCAAAcgatttgaatgt
ttttttaaatgtcaGCGACCATATCATTTCTTATACTATATCATTTCTTA
TACCATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033580XLOC_033580Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053197-exon-scaffold_226-1491911889:575211..575418TCONS_00053197-exon-scaffold_226-1491911889:575211..575418Clytia hemisphaericaexon
TCONS_00053197-exon-scaffold_226-1510915933:575211..575418TCONS_00053197-exon-scaffold_226-1510915933:575211..575418Clytia hemisphaericaexon
TCONS_00053197-exon-scaffold_226-1575043694:575211..575418TCONS_00053197-exon-scaffold_226-1575043694:575211..575418Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_226supercontigscaffold_226:575211..575418 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053197 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top