TCONS_00053179 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053179
Unique NameTCONS_00053179
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3258

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053179 ID=TCONS_00053179|Name=TCONS_00053179|organism=Clytia hemisphaerica|type=transcript|length=3258bp
CCCAAATGAAAATAACCATCATTTAAGTTGATTAGAATAATCAAAATTTA
TGTAATATAATATCGGCTCATTGTTTCTTGTGAAGAACTTTGAGTAGCGA
TTGATTTGACCCTGTCAAAATCGGGGAGCCTTATCGCTCATTAAGCTTGA
ATCTGTTTTTCTACTCGTTGTTTATAGTTAGGGATCTTATATCAAACAAT
CTACAAACCGCTTACATAAAATTTCACTGTAAGAAAGTCTCTATAGCTTG
GAAACACACGCGGGGTTGAGTTTTACAGACTTATAAGGATCTATAACCTG
GAGGTTACCAAACAACTTGTCCAGTTTAGAAGACTATTCAATATTATAGA
GACACGGGTTGCTACAAGTTCTCTCTAATTTTGGTAACTTGTTTTTGGTA
GAAAATTAACGAAAAATGGAGCTGGTTAAATCTCAAAGTACCGCAATTTC
TCACGGAAAGACATTATGGAAAAATGCAACGAAGTCGTTATTGAAAACGA
AGAAAATACAAGAAGGGTATACCAATCTAGATATGGGATCACTATCTGAG
GTTCTGTTGCATTCGCTACAAGAAGAATGGGAACGAAAGACGTCTTTCAT
GAAAGAATGTCCACTTTTCGGACAGTGGTTACCGAGAGAATTAAAAGCCG
TTGGTGCCACCGCAACCGTTTGTGAATTCCCAGAAAATAATGTTATCATC
AAAGACTTGTCAAAACATGAAGGAATTGTTTATGCTATCATAAGTGGGCG
GTGTctggtggtcagtaaaatacacGTCATGAGAGAATCACCGCCTTACG
GTCAGCGAAAGATGAGAATGATTTCTAGCGCCAGGGCAAACGAGAAGAGA
GATCTTAAGAAATGTGAGCAAAAAGAAATCATCTTTTTAGTCATACGTAA
ACTGGAGAAAGGCGATTGTTTTGGATTTGGAGAAAAGCTACCCGACACAA
GCGTTATCAGTGAAAAGCAGGTCGAGCTACTCTCAATCCCAACTGTTCAA
TTAATACGGCACGGATCAGACCGGTTTCTCCCGGACGCGCGAACGAATGA
AATGACGAAATACCCGACGCTGAAAGAAGCATTTATGAATTACAAAACGA
AACAAGACTGGGAATCGTATAAAGAACAGATCAGAGATAATATTTTGCGA
AAGAAGTATTCTTAATGGCTGGCTAAAAAAATTTCTATGAAAGTTGTTAC
AAGTTGTTACGACCAATTCTATAATAATAAGTTGACTTAAACTGATatgg
tttttttttcagacatGAATCGAACGTGTTCAGAATTTCATGGATTTTAT
ATTCTGGCCAGCAAATTATCATTTCAAGCTTTATACTTTTATAGTAAAAA
TTTTTGCTTATTAtttcaaaggttttgtttttaaatcaaatttaatttac
aagctttttgatattgaattgacacggatgtggagtaagattggtcagaa
agaggaaaagaaaaacatttttttgcatatatcagcataatataacaatg
agcagacactgtcctaatatgaaatatgtgtctgatatgaaacgggaaca
cttatgtaaaaataaaaccttaaagACTTTATTCCTTTTTTCTCCAAGAA
ATTATACATAAAAGTCCCAAGCCCTACATGTTTTTGCGTTCTCTATGAGC
ATCAAAGGGCTCATATTCAAAAATAGTCAATATCCACATCTGATACCACT
CAATAATAAAATAGTCTAAGATTGAATAGTGATATAATTTTTTACAGATT
TGCAAACATGGGGTTCGAACCTAATAGTCCCATATAATTACTAACACTCT
ACTTTGCTAGTGTAGCCGGTCAGAGCATCTCACTAGTATAcataataatt
ttataaatataaatattttttctagactttgcactttactatataatatt
ttcagccgaagagccaaatgtaaattttggagattgaaatataccattat
tattattataatattcTAGGCTCAAAAGGAAGGGACAAAAATAGatcaaa
aatcaactttcttcAAAAAGCGGCGACCGTAGTGCCATGGTatagcatcc
ggctacggtgcgcaaggttgtgggtttgaACCTTCTAGacaggtcatacc
aaagatttccaaaatggtacttgactCTCTGCTTCATGCTCAGCACAGGA
TCAAGGGTACGTGGAGCagtccagggagaaagagtgcaCCCTCTCCTTCC
TTCGGGTAGatagtagcgagtttatgtattcgagataaatcgagggggac
ggtataaagcaaagctgacatggggtcgaaatcgccgtccactttgctcg
acgacggtaaaaacaccaaaataccgtcgtctgtttagtgAGCAAAGGCG
acatagagccgtacatcaactatcgactttgttttgtatcatttctctta
ccgtcgccctcgatatcctccgatacataaactcggtagttATCGAAAGA
GAGATAGTTATTGAAAGAGCCTTTGGGTCGCATCCGACTGCGGTCACAGA
cttcaaatttgatgaaatttgttattttgaaaaagggTACATGGTTTCTG
CCCCCCTCCCTTAAAATAAGGGGCGGGGgtcaaaaaaattgccttttaaa
ACAGGGgggatttttgtcattttttttaaataaggggggattctttatca
agggctgcaagaatctatcataataagaaaaaaggggggactaaaatatt
tggttttattgataataattttctttgtctAATAATATCTTCTTTCCCGT
TTTTGTGCTCACAATCTCATGCCCACTATTTTGCAGACCATGCTATATTG
AAAGTTATGTACATTAGAATGACCTTTaacagaccaaatcaaaccataaa
aactattattctccccaattagataacgttttaagctgttttgagggtgt
aaaaatcTGATGTCATCCAAAATCAATGTCATGAGCATGAAATCTTACTT
GTGTTTTACTGCCTAAATTCTCTACTTGGGAAGACCACTTACTCGACCTA
ACTTAAACTAGGACTACAATTAGAAAACATTCCCAGTTCAAATCTAATAG
ATAATTTCCAAGGCCTAAGATATGAACAAAACACAACTGTTGTACCAGGT
ACtgcattttttgattttattcataaaaagttttatttgtatcatttgat
tataggatccagtttattttcaatgatttctttttattgaattttattta
gtTGGATATCATTATGTACCTAATATAATGTTGATGGCATTGATATCAAA
CCAATCGT
Run BLAST on NCBI

protein sequence of TCONS_00053179-protein

>TCONS_00053179-protein ID=TCONS_00053179-protein|Name=TCONS_00053179-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp
MELVKSQSTAISHGKTLWKNATKSLLKTKKIQEGYTNLDMGSLSEVLLHS
LQEEWERKTSFMKECPLFGQWLPRELKAVGATATVCEFPENNVIIKDLSK
HEGIVYAIISGRCLVVSKIHVMRESPPYGQRKMRMISSARANEKRDLKKC
EQKEIIFLVIRKLEKGDCFGFGEKLPDTSVISEKQVELLSIPTVQLIRHG
SDRFLPDARTNEMTKYPTLKEAFMNYKTKQDWESYKEQIRDNILRKKYS
Run BLAST on NCBI

transcript from alignment at scaffold_226:582931..594321-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053179 ID=TCONS_00053179|Name=TCONS_00053179|organism=Clytia hemisphaerica|type=transcript|length=11391bp|location=Sequence derived from alignment at scaffold_226:582931..594321- (Clytia hemisphaerica)
CCCAAATGAAAATAACCATCATTTAAGTTGATTAGAATAATCAAAATTTA
TGTAATATAATATCGGCTCATTGTTTCTTGTGAAGAACTTTGAGTAGCGA
TTGATTTGACCCTGTCAAAATCGGGGAGCCTTATCGCTCATTAAGCTTGA
ATCTGTTTTTCTACTCGTTGTTTATAGTTAGGGATCTTATATCAAACAAT
CTACAAACCGCTTACATAAAATTTCACTGTAAGAAAGTCTCTATAGCTTG
GAAACACACGCGGGGTTGAGTTTTACAGACTTATAAGGATCTATAACCTG
GAGGTTACCAAACAACTTGTCCAGTTTAGAAGACTATTCAATATTATAGA
GACACGGGTTGCTACAAGTTCTCTCTAATTTTGGTAACTTGTTTTTGGTA
GAAAATTAACGAAAAATGGAGCTGGTTAAATCTCAAAGTACCGCAATTTC
TCACGGAAAGACATTATGGAAAAATGCAACGAAGTCGTTATTGAAAACGA
AGAAAATACAAGAAGGGTATACCAATCTAGATATGGGATCACTATCTGAG
GTAAGACCTACAAACCTTATCGAATATTGTTGAAGGTCCCATTCGTATGA
ATTCCCCACATGACTAACAAAACTTTTTGATAAAATAATGTCCGGTAGGC
CCATTTGCCGGACATTATTTTATCAAAAAATCTGTAAATAAGAGTATGGG
AAGTCTTGATAAGTTACGTAATTTCCCCCATTATGGAAACAAACGTTTGA
ATCTGTACAGGCGATTCCTTACGAAAATCGAACGTTTCCTTCTACATGTG
CACAATGGTGGAGATTATGTAGCTTAACAAAACAAGTGCAGTAGCGTAGA
CAGGGGTGAAGGAACATTCGCCTAGGAGAGCAGATTTAAACGGCACAGTA
ATTATGTTTTTCTACCACAAATAGGTAAGTGTCTTGTCGTAAAAGTCTGC
TCTCCTACGCAGATCGTTCTTCACGCCTGTCTACACTAGTGTTGTGCGAC
TTTTTTCCACGATTTTTATTGTTATAATTATTGTTATCATGCACGTTTCA
GGTTCTGTTGCATTCGCTACAAGAAGAATGGGAACGAAAGACGTCTTTCA
TGAAAGAATGTCCACTTTTCGGACAGTGGTTACCGAGAGAATTAAAAGCC
GTTGGTGCCACCGCAACCGTTTGTGAATTCCCAGAAAATAATGTAAGATA
TCAATGGATCAAATTTTCTTCCCGTGAAAGACCCTCACTAAGTAAGTAGT
TTAGGTATAAACTTATTAATTTCGCATAGCGAAAGTATTACAATAGGCTT
TCGCGGTGGCGGCGGTGCGGAAAAAAAATTAGAAAACGAAAGTAGTTGAA
ACTTCTAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTTTCGAGGTAGGGTCGGTCGGGTGACGGCAAACCAA
CAATTTTTTGGAAAATCTATCACAATTACAATTGATAGCCAATTGCGCTT
CCTGTAAAATCTTGATTATCGATTGTCTATCAATTATCAAAATCAAACAA
TATGCAATCCATCGATTATTTATCAATTAGTCATTGATTGGAAAAAGTTA
TCAATTGTATCGATTGAGAGTCTGGCATGTTGGATTGGCGCTTTGTACGT
GGGATAGTGGTCATTGGACCTTGGTTGCTAAGCAGGCGTCAAAGTTTGGG
ATTCCCACTCACAGCGGTTCACTTGGAAAGTGAATGAGCCTTCACCCGGG
TCAACCCAAATGGATGCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGCA
AGACTGTCGTTGAAGTCTATATCAAAATCTTACTGGAAAATTTGTATCAA
CTTTGATTGAATACTGTACAATGGATTTGAGTTTTGATTGATCAGCTATA
TTTAACTCAAAAGACAAACTTTTGTATACAGTGCCAGACTCCCACTCAAA
ACAATTGATTCATTTCAATCAATTGACTGGATATCAATTGGTTCTGGTAC
CGTAAGTTGGTCTAATGTCGACATCCCTCTTCTAATTCCGACACCCTTCT
TTAGAGATACAATTATCCCTATCTTTAAAGAAGGATGTCAAAATTAAAAG
GGGGATGTTGACATTAGACCAACGTACAGTAATTGATAGGTATTCGATAA
TGTTATGCTAATTATGACATTAAGGAAGGCTCGATTACATTAGTTGATCG
ATTATTCAATAATTGCCTCTAAGATTATCAATCCAGATTGATTATTTAAT
GGTTGCAAGTTTAATCATTCAAATCCAATTAATGATCAATATTCAAAATT
TTCTAATAGGCTTCATTACCTATCGAATATTGGAACAAATTGATTGGTTA
TTGATCAAAAAAAGAAAAAGAAGTCAATCAAATTTGAAAAACATTTTTGC
AGAAAAAAAATTGGCCTTAAAATTTCAAATTTAAAATATTTATGTCATTT
TCCAAATTTGTGCTTTTCGAGCCTTGAAACAGTTATTTTTTTTATCTAAT
AGCAATATTTTGCCAGAAATAGCCCTTAATGGCAAAATTAAATTCTTTTT
ATATTTATTTTTCAAGGCATCGGCAAAATAAATGCCCGTCAAAGTTGATT
GTGTTTGATTTTGTTTTATTGAGATAGTATATATTATGTATCTGTCATTA
AAGTCTGTCATCTCAAAAGTATGTAGATACTTTAGTTACCTTTCAAACAA
ATTCTCAGCACCAAGTTATGCTAAAGTAGGAAGTTATATACCGTTAGAAT
TGGAATGATATATTAGAGGTGAACAATCTATATGACTATAATTTTGAAAT
ATTGAGAAAAACTACATGTTTTTTCTTTTATAAGCATACGCAGGCTCAGT
TTTTGGCACCTAAACAATGGCTCTTTTGTTTGAGAACAATAGAATGCTAA
GCATAATGCGAGCCTGGTATAGGGGCAGACACATGCTTATAAAAAAAAAC
ATGTATATTTTTTGATTTATCTACAAGGTGTAAAAATTTTAATATTTTTG
TAAATAGTCAAAGATATTGGTATGATATTGATATGTAACTTGGCCACACT
GGGATAGTTCACATTTGGGTGACAATAAAGCTCTAGCCCNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNGGTTTTTGACCTTCCCAAGTCTCTG
AATTATTTAAGGTACGAAAAACTTGAAAAGTCATAAAAATCTCTAGAAGG
TTAGAAATTTTTTTGAAAATGTGCTCTACGAGTCACATTTTCGCCTTGTC
TCTGTAAGGGTAACTTTATTCTCTGTTAGAGCCAGTTTTTCTCAGGTCCG
ATTGACATTCTCCAACTCTAGTACTCCCCGGTCGTTTTTAATATGATTAT
TTCATCTATGAATAATCAAATACTTTGCGAAATTTTCGACTCTGAGTCGT
CTTGTTTCTTTTCTTATGATTTTTGTTGACGAAAAATCATAAAAAAGAAG
TAAGTTTATACCTAAACTACTCACTAAGTAAAACCGCTGTTTTTTTTTAA
ATTTCGAAGGTTTTCTAACCAACGGGAAGCCGTTATGGGAGCGGGGGAGC
GCAATCAGTCGACCGTGAAAAACCTATTGAGTAAAACATAGCAAAGTTGA
CTTACCTTCATCCCAGTTGAATACCGTGGTTGATTGACCTCTATCCAGCA
CTTCCAGCTTACTTCAAGTTCTCTTCCTATAAGTAAAGCGAAGTTTGGTA
CACAAACTCCAGAGGACGGATGCGATTTAAATTTAAAATTCAATAAGCGA
TTGAACTCCCTCCAGTAGTTTAATATTGATATCTGCTTGAGGAAAAAGAT
TGGGACAGGGCCAGGCGAAAGGAGTACTATACCAAGTTTATGTATGTGTT
TGTTTTTCTGCGACGGAGACAGTAAGGTTCTAATTTGAATAGATCCTGAA
CAAGTGAGGACGACGGTAAATCAGCACTTTTACCGACCTCGATATTGCGG
GTTAGAACTGCGGGTTATTCCAAAACGCTTCAGGCACTCTACCGTCATCA
AAAGTGCAAATACATAAACTCGCTTATGTTTATAAGGTGACGGATATGTT
TCAGCTAGAAATCGAAAGTAATAGAGCACAATTTTTTCAACGTTTTCGGA
ATATTCTCTGGGAAAAATTGCTCGATTTTCTCGTTTATAAAGGAAAAAGA
TTTTGGAAGCTTTTAAGAGATTGAATAATGTTTACAGGTTATCATCAAAG
ACTTGTCAAAACATGAAGGAATTGTTTATGCTATCATAAGTGGGCGGTGT
CTGGTGGTCAGTAAAATACACGTCATGAGAGAATCACCGCCTTACGGTCA
GCGAAAGATGAGAATGATTTCTAGCGCCAGGGTGAGTAAGAGAAAATGGA
TCAGTTTTAATTATTCCAAGCGTTCTTACTATAAAACCGAAGTATTCAGA
GGTAGTAGGCTTGGTTAGTAAAATCATAGAGGTATAAAGAAAGACAGGAG
ATGAATTTGTCGGTAATTGGTCGTTAAAGTCTTTTGATTTCTTTTATGTA
ATAAATCAAAAGAAATTCTACGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCT
ATGAGCATGCATACCTCGTAATTTTTTTAATCGTAGGGCGAGCATGGTTA
CAATAGCATACTTCTCCTGTTTCTTTATACCTCCATGGTAAAATACACGT
CACGAGAAATAATCAACAGCCTTGAAATTAACACGCAAAAAAATTAACAC
GAATTTTATTTGCTTTTTCAAGAACACCACGGCTGGTTTTAATTAAAGGG
GTTTTGATTAATACGAGATTTCTTAATTTGTGTTAATTACATGTCTACTT
TTTTCGTGTAATAAGGTAGTTTCAATATTTTGGTTGTTTTAACAGGGAAG
TGTTTAGAGGGCAAGCCAAATAGGTGCTGGGGCAAGCATTAGTGGACTGC
AAAGTGAATACACCTGTCAAAAGCCAACTTATTTAGACGGAAACTTGCAA
ATGGTCAGTCGAGGCTCCTCACAAAACCCTTTCAGGTGGTAGGCAAAAAC
TAAACACTTCTTTCCGTTTTAGAATCCCTGCTGAGGTATGCACCATTTTT
AGAATTCGAACTACAATCATGGACAAATTATTTGAGCCTTGGATTTCCCT
GCGAAATTCCAAACACCACAAATGATTTTTAAGCACATTAAACTACGGTT
GCAAAATGGAGTTTTAATTCTTGATTTTTGATTTTTGACATAAGACTGAG
GACCTTAGGATCTCAGGATTTAAAAGCTCGAATTTGATCCAATAAGGCTT
GGAATTTAGCCTAGAAGCCACTGAACCCCTACAAAATCGAAATATTCAAT
AAAAGAAAGTTGAAGGGCTAAAATAGTAATTCTCGCCCGAACTTTATATT
CTGAAAAACGTTAAAATACACTAAAATCTCAACATATTTCGACCATGATT
GTAGTCCACGTTATTGCATGTATGCAGTGGTATCATAAATATGCAAACAA
ACGAGCGAGGAAGAATCTTGGAAAAATAAGAGAACTTTTTAAGTCTTTCT
CTTACTTTAGGCAAACGAGAAGAGAGATCTTAAGAAATGTGAGCAAAAAG
AAATCATCTTTTTAGTCATACGTAAACTGGAGAAAGGCGATTGTTTTGGA
TTTGGAGAAAAGCTACCCGACACAAGCGTTATCAGTGAAAAGCAGGTAAA
TGTTTCAGAAAATTATCTCTTCTTGTCCTATATCAATTTGTTGTCAAAGT
TTCTCTGTATCTCGAACTGTTTTTTAAATCGAACAAAAGATTTAGCTTTA
TGAAATACCTGTATATTTCGATTTGGCCTTGCAAGTTAAATTAGATCACA
TCAAAACGAATCAATGAGTACTTAAGTTTATCAATCAATATTGTGGAAAA
AAAATTACTTAGGCTTAAATGATGTATTGTGGCTCGGTTAGCTGCTTTTT
CGAAAGGAAAGACGTAGCCCTGTTTGGGACCGGAATGTAAATGGACCAGA
ATTTTGATAATTAAGTGCTAAAAACACTTCACATCATTAGAGTTTTTAAA
TCAAATTCTACATCACTCCTTACAAAACGATTCACGGATATACTTTTTTC
CAGGTCGAGCTACTCTCAATCCCAACTGTTCAATTAATACGGCACGGATC
AGACCGGTTTCTCCCGGACGCGCGAACGAATGAAATGACGAAATACCCGA
CGCTGAAAGAAGCATTTATGAATTACAAAACGAAACAAGACTGGGAATCG
TATAAAGAACAGATCAGAGATAATATTTTGCGAAAGAAGTATTCTTAATG
GCTGGCTAAAAAAATTTCTATGAAAGTTGTTACAAGTTGTTACGACCAAT
TCTATAATAATAAGTTGACTTAAACTGATATGGTTTTTTTTTCAGACATG
AATCGAACGTGTTCAGAATTTCATGGATTTTATATTCTGGCCAGCAAATT
ATCATTTCAAGCTTTATACTTTTATAGTAAAAATTTTTGCTTATTATTTC
AAAGGTTTTGTTTTTAAATCAAATTTAATTTACAAGCTTTTTGATATTGA
ATTGACACGGATGTGGAGTAAGATTGGTCAGAAAGAGGAAAAGAAAAACA
TTTTTTTGCATATATCAGCATAATATAACAATGAGCAGACACTGTCCTAA
TATGAAATATGTGTCTGATATGAAACGGGAACACTTATGTAAAAATAAAA
CCTTAAAGACTTTATTCCTTTTTTCTCCAAGAAATTATACATAAAAGTCC
CAAGCCCTACATGTTTTTGCGTTCTCTATGAGCATCAAAGGGCTCATATT
CAAAAATAGTCAATATCCACATCTGATACCACTCAATAATAAAATAGTCT
AAGATTGAATAGTGATATAATTTTTTACAGATTTGCAAACATGGGGTTCG
AACCTAATAGTCCCATATAATTACTAACACTCTACTTTGCTAGTGTAGCC
GGTCAGAGCATCTCACTAGTATACATAATAATTTTATAAATATAAATATT
TTTTCTAGACTTTGCACTTTACTATATAATATTTTCAGCCGAAGAGCCAA
ATGTAAATTTTGGAGATTGAAATATACCATTATTATTATTATAATATTCT
AGGCTCAAAAGGAAGGGACAAAAATAGATCAAAAATCAACTTTCTTCAAA
AAGCGGCGACCGTAGTGCCATGGTATAGCATCCGGCTACGGTGCGCAAGG
TTGTGGGTTTGAACCTTCTAGACAGGTCATACCAAAGATTTCCAAAATGG
TACTTGACTCTCTGCTTCATGCTCAGCACAGGATCAAGGGTACGTGGAGC
AGTCCAGGGAGAAAGAGTGCACCCTCTCCTTCCTTCGGGTAGATAGTAGC
GAGTTTATGTATTCGAGATAAATCGAGGGGGACGGTATAAAGCAAAGCTG
ACATGGGGTCGAAATCGCCGTCCACTTTGCTCGACGACGGTAAAAACACC
AAAATACCGTCGTCTGTTTAGTGAGCAAAGGCGACATAGAGCCGTACATC
AACTATCGACTTTGTTTTGTATCATTTCTCTTACCGTCGCCCTCGATATC
CTCCGATACATAAACTCGGTAGTTATCGAAAGAGAGATAGTTATTGAAAG
AGCCTTTGGGTCGCATCCGACTGCGGTCACAGACTTCAAATTTGATGAAA
TTTGTTATTTTGAAAAAGGGTACATGGTTTCTGCCCCCCTCCCTTAAAAT
AAGGGGCGGGGGTCAAAAAAATTGCCTTTTAAAACAGGGGGGATTTTTGT
CATTTTTTTTAAATAAGGGGGGATTCTTTATCAAGGGCTGCAAGAATCTA
TCATAATAAGAAAAAAGGGGGGACTAAAATATTTGGTTTTATTGATAATA
ATTTTCTTTGTCTAATAATATCTTCTTTCCCGTTTTTGTGCTCACAATCT
CATGCCCACTATTTTGCAGACCATGCTATATTGAAAGTTATGTACATTAG
AATGACCTTTAACAGACCAAATCAAACCATAAAAACTATTATTCTCCCCA
ATTAGATAACGTTTTAAGCTGTTTTGAGGGTGTAAAAATCTGATGTCATC
CAAAATCAATGTCATGAGCATGAAATCTTACTTGTGTTTTACTGCCTAAA
TTCTCTACTTGGGAAGACCACTTACTCGACCTAACTTAAACTAGGACTAC
AATTAGAAAACATTCCCAGTTCAAATCTAATAGATAATTTCCAAGGCCTA
AGATATGAACAAAACACAACTGTTGTACCAGGTACTGCATTTTTTGATTT
TATTCATAAAAAGTTTTATTTGTATCATTTGATTATAGGATCCAGTTTAT
TTTCAATGATTTCTTTTTATTGAATTTTATTTAGTTGGATATCATTATGT
ACCTAATATAATGTTGATGGCATTGATATCAAACCAATCGT

Coding sequence (CDS) from alignment at scaffold_226:582931..594321-

>TCONS_00053179 ID=TCONS_00053179|Name=TCONS_00053179|organism=Clytia hemisphaerica|type=CDS|length=3750bp|location=Sequence derived from alignment at scaffold_226:582931..594321- (Clytia hemisphaerica)
GTCGAGCTACTCTCAATCCCAACTGTTCAATTAATACGGCACGGATCAGA
CCGGTTTCTCCCGGACGCGCGAACGAATGAAATGACGAAATACCCGACGC
TGAAAGAAGCATTTATGAATTACAAAACGAAACAAGACTGGGAATCGTAT
AAAGAACAGATCAGAGATAATATTTTGCGAAAGAAGTATTCTTAAGCAAA
CGAGAAGAGAGATCTTAAGAAATGTGAGCAAAAAGAAATCATCTTTTTAG
TCATACGTAAACTGGAGAAAGGCGATTGTTTTGGATTTGGAGAAAAGCTA
CCCGACACAAGCGTTATCAGTGAAAAGCAGGTTATCATCAAAGACTTGTC
AAAACATGAAGGAATTGTTTATGCTATCATAAGTGGGCGGTGTCTGGTGG
TCAGTAAAATACACGTCATGAGAGAATCACCGCCTTACGGTCAGCGAAAG
ATGAGAATGATTTCTAGCGCCAGGGTTCTGTTGCATTCGCTACAAGAAGA
ATGGGAACGAAAGACGTCTTTCATGAAAGAATGTCCACTTTTCGGACAGT
GGTTACCGAGAGAATTAAAAGCCGTTGGTGCCACCGCAACCGTTTGTGAA
TTCCCAGAAAATAATATGGAGCTGGTTAAATCTCAAAGTACCGCAATTTC
TCACGGAAAGACATTATGGAAAAATGCAACGAAGTCGTTATTGAAAACGA
AGAAAATACAAGAAGGGTATACCAATCTAGATATGGGATCACTATCTGAG
GTCGAGCTACTCTCAATCCCAACTGTTCAATTAATACGGCACGGATCAGA
CCGGTTTCTCCCGGACGCGCGAACGAATGAAATGACGAAATACCCGACGC
TGAAAGAAGCATTTATGAATTACAAAACGAAACAAGACTGGGAATCGTAT
AAAGAACAGATCAGAGATAATATTTTGCGAAAGAAGTATTCTTAAGCAAA
CGAGAAGAGAGATCTTAAGAAATGTGAGCAAAAAGAAATCATCTTTTTAG
TCATACGTAAACTGGAGAAAGGCGATTGTTTTGGATTTGGAGAAAAGCTA
CCCGACACAAGCGTTATCAGTGAAAAGCAGGTTATCATCAAAGACTTGTC
AAAACATGAAGGAATTGTTTATGCTATCATAAGTGGGCGGTGTCTGGTGG
TCAGTAAAATACACGTCATGAGAGAATCACCGCCTTACGGTCAGCGAAAG
ATGAGAATGATTTCTAGCGCCAGGGTTCTGTTGCATTCGCTACAAGAAGA
ATGGGAACGAAAGACGTCTTTCATGAAAGAATGTCCACTTTTCGGACAGT
GGTTACCGAGAGAATTAAAAGCCGTTGGTGCCACCGCAACCGTTTGTGAA
TTCCCAGAAAATAATATGGAGCTGGTTAAATCTCAAAGTACCGCAATTTC
TCACGGAAAGACATTATGGAAAAATGCAACGAAGTCGTTATTGAAAACGA
AGAAAATACAAGAAGGGTATACCAATCTAGATATGGGATCACTATCTGAG
GTCGAGCTACTCTCAATCCCAACTGTTCAATTAATACGGCACGGATCAGA
CCGGTTTCTCCCGGACGCGCGAACGAATGAAATGACGAAATACCCGACGC
TGAAAGAAGCATTTATGAATTACAAAACGAAACAAGACTGGGAATCGTAT
AAAGAACAGATCAGAGATAATATTTTGCGAAAGAAGTATTCTTAAGCAAA
CGAGAAGAGAGATCTTAAGAAATGTGAGCAAAAAGAAATCATCTTTTTAG
TCATACGTAAACTGGAGAAAGGCGATTGTTTTGGATTTGGAGAAAAGCTA
CCCGACACAAGCGTTATCAGTGAAAAGCAGGTTATCATCAAAGACTTGTC
AAAACATGAAGGAATTGTTTATGCTATCATAAGTGGGCGGTGTCTGGTGG
TCAGTAAAATACACGTCATGAGAGAATCACCGCCTTACGGTCAGCGAAAG
ATGAGAATGATTTCTAGCGCCAGGGTTCTGTTGCATTCGCTACAAGAAGA
ATGGGAACGAAAGACGTCTTTCATGAAAGAATGTCCACTTTTCGGACAGT
GGTTACCGAGAGAATTAAAAGCCGTTGGTGCCACCGCAACCGTTTGTGAA
TTCCCAGAAAATAATATGGAGCTGGTTAAATCTCAAAGTACCGCAATTTC
TCACGGAAAGACATTATGGAAAAATGCAACGAAGTCGTTATTGAAAACGA
AGAAAATACAAGAAGGGTATACCAATCTAGATATGGGATCACTATCTGAG
GTCGAGCTACTCTCAATCCCAACTGTTCAATTAATACGGCACGGATCAGA
CCGGTTTCTCCCGGACGCGCGAACGAATGAAATGACGAAATACCCGACGC
TGAAAGAAGCATTTATGAATTACAAAACGAAACAAGACTGGGAATCGTAT
AAAGAACAGATCAGAGATAATATTTTGCGAAAGAAGTATTCTTAAGCAAA
CGAGAAGAGAGATCTTAAGAAATGTGAGCAAAAAGAAATCATCTTTTTAG
TCATACGTAAACTGGAGAAAGGCGATTGTTTTGGATTTGGAGAAAAGCTA
CCCGACACAAGCGTTATCAGTGAAAAGCAGGTTATCATCAAAGACTTGTC
AAAACATGAAGGAATTGTTTATGCTATCATAAGTGGGCGGTGTCTGGTGG
TCAGTAAAATACACGTCATGAGAGAATCACCGCCTTACGGTCAGCGAAAG
ATGAGAATGATTTCTAGCGCCAGGGTTCTGTTGCATTCGCTACAAGAAGA
ATGGGAACGAAAGACGTCTTTCATGAAAGAATGTCCACTTTTCGGACAGT
GGTTACCGAGAGAATTAAAAGCCGTTGGTGCCACCGCAACCGTTTGTGAA
TTCCCAGAAAATAATATGGAGCTGGTTAAATCTCAAAGTACCGCAATTTC
TCACGGAAAGACATTATGGAAAAATGCAACGAAGTCGTTATTGAAAACGA
AGAAAATACAAGAAGGGTATACCAATCTAGATATGGGATCACTATCTGAG
GTCGAGCTACTCTCAATCCCAACTGTTCAATTAATACGGCACGGATCAGA
CCGGTTTCTCCCGGACGCGCGAACGAATGAAATGACGAAATACCCGACGC
TGAAAGAAGCATTTATGAATTACAAAACGAAACAAGACTGGGAATCGTAT
AAAGAACAGATCAGAGATAATATTTTGCGAAAGAAGTATTCTTAAGCAAA
CGAGAAGAGAGATCTTAAGAAATGTGAGCAAAAAGAAATCATCTTTTTAG
TCATACGTAAACTGGAGAAAGGCGATTGTTTTGGATTTGGAGAAAAGCTA
CCCGACACAAGCGTTATCAGTGAAAAGCAGGTTATCATCAAAGACTTGTC
AAAACATGAAGGAATTGTTTATGCTATCATAAGTGGGCGGTGTCTGGTGG
TCAGTAAAATACACGTCATGAGAGAATCACCGCCTTACGGTCAGCGAAAG
ATGAGAATGATTTCTAGCGCCAGGGTTCTGTTGCATTCGCTACAAGAAGA
ATGGGAACGAAAGACGTCTTTCATGAAAGAATGTCCACTTTTCGGACAGT
GGTTACCGAGAGAATTAAAAGCCGTTGGTGCCACCGCAACCGTTTGTGAA
TTCCCAGAAAATAATATGGAGCTGGTTAAATCTCAAAGTACCGCAATTTC
TCACGGAAAGACATTATGGAAAAATGCAACGAAGTCGTTATTGAAAACGA
AGAAAATACAAGAAGGGTATACCAATCTAGATATGGGATCACTATCTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033562XLOC_033562Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053179-exon-scaffold_226-1575043694:593772..594321TCONS_00053179-exon-scaffold_226-1575043694:593772..594321Clytia hemisphaericaexon
TCONS_00053179-exon-scaffold_226-1575043694:593130..593270TCONS_00053179-exon-scaffold_226-1575043694:593130..593270Clytia hemisphaericaexon
TCONS_00053179-exon-scaffold_226-1575043694:587491..587634TCONS_00053179-exon-scaffold_226-1575043694:587491..587634Clytia hemisphaericaexon
TCONS_00053179-exon-scaffold_226-1575043694:585627..585761TCONS_00053179-exon-scaffold_226-1575043694:585627..585761Clytia hemisphaericaexon
TCONS_00053179-exon-scaffold_226-1575043694:582931..585218TCONS_00053179-exon-scaffold_226-1575043694:582931..585218Clytia hemisphaericaexon
TCONS_00053179-exon-scaffold_226-1510915933:593772..594321TCONS_00053179-exon-scaffold_226-1510915933:593772..594321Clytia hemisphaericaexon
TCONS_00053179-exon-scaffold_226-1510915933:593130..593270TCONS_00053179-exon-scaffold_226-1510915933:593130..593270Clytia hemisphaericaexon
TCONS_00053179-exon-scaffold_226-1510915933:587491..587634TCONS_00053179-exon-scaffold_226-1510915933:587491..587634Clytia hemisphaericaexon
TCONS_00053179-exon-scaffold_226-1510915933:585627..585761TCONS_00053179-exon-scaffold_226-1510915933:585627..585761Clytia hemisphaericaexon
TCONS_00053179-exon-scaffold_226-1510915933:582931..585218TCONS_00053179-exon-scaffold_226-1510915933:582931..585218Clytia hemisphaericaexon
TCONS_00053179-exon-scaffold_226-1491911889:593772..594321TCONS_00053179-exon-scaffold_226-1491911889:593772..594321Clytia hemisphaericaexon
TCONS_00053179-exon-scaffold_226-1491911889:593130..593270TCONS_00053179-exon-scaffold_226-1491911889:593130..593270Clytia hemisphaericaexon
TCONS_00053179-exon-scaffold_226-1491911889:587491..587634TCONS_00053179-exon-scaffold_226-1491911889:587491..587634Clytia hemisphaericaexon
TCONS_00053179-exon-scaffold_226-1491911889:585627..585761TCONS_00053179-exon-scaffold_226-1491911889:585627..585761Clytia hemisphaericaexon
TCONS_00053179-exon-scaffold_226-1491911889:582931..585218TCONS_00053179-exon-scaffold_226-1491911889:582931..585218Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053179-proteinTCONS_00053179-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_226supercontigscaffold_226:582931..594321 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.104838	0.121726	0.11909	2.93306	1.75653	14.7113	15.7129	17.5804	21.4973	10.7168	14.5723	0	0	0	0	0	0.0827211	0	0	0.935506	0.760512	1.849	2.01722	1.61598	0.515079	0.737076	3.04839	3.15028	4.17495
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014710RmlC-like_jellyroll
IPR018490cNMP-bd-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053179 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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