TCONS_00053177 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053177
Unique NameTCONS_00053177
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1147

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053177 ID=TCONS_00053177|Name=TCONS_00053177|organism=Clytia hemisphaerica|type=transcript|length=1147bp
AACATCCCATACATCATTCGAAACACTGTACAGGCTAGTGTCTTTCCTGT
GATAGTCTACGACAAGCATGTATTCcggacccggggggggggggggggca
ctgaatTTCTAAACCTTCTAGAACTTTATAGTgtactctatcaaaagtac
acccttacagtgtatttcgagggtctcgaaaaacctacccttaaggacGG
CAAATGCCGTGGGttggaccatatgagtgccccctcCCCCGGATTCCGGA
TGGATGACAGACGTTTGCATGCCTGGTTCTACAAAACattatgtaaacaa
attcttttattaaatttcgttaaatgcacgttctgatataagcaaaaaat
gtttttcttttcctttctcTGACAAagcttgctccacatccgtgtcaatc
aaatgtgaaaaagttttgaaatcaaagctgatgagtaagcaaacgatatt
actcttatttaaaaacaaaacctttaaatcaacCGTTAAGTTTTAGGTCA
TTTTGACCAGAGTGAGTACATGATAAAATTGTGCAGAAATTCATCGGCTG
GGCTAAAATTCATCAATGGTAAAACGAGAACTTTTCAGCTTTAGTGTCTT
TAAAATGGTACATTGGAACTACTCGAGCTCTCTTCTCAGGCGACGCTACA
TCCTTAAAGTGGTACATTGGAACTACTCGAGCTCTCTTCTCAGGCGACGC
TACATCCTTAAAGTGGTACATTGGTACATTGCGCGATCTCTTCCTAGACG
ATACTGCATCCTTAAAATGGTACATTGGAACTTTGTGAGCTCTCTTCTCT
GGCGACGCTCCATCCTTGAAGTGATACATTGGAACTCTCTTGGCAGCCCt
agaatcaaaatggtagatagGGACCCTCTCAGATGCGGTATCTTTGTAAC
GGTGAAGCCAAGGGCTGAATCCGTTTCCATAACCTTCTCGTTTATCAGCG
TCAGCATTTATTTGACTGATGTGTGGTTTGTTTTTCTCACTTCCGCAATC
TTCGACATCCGGATTACAAGACGAGTACCGGTTCCCTACGGCACGTTTCA
GTTCGCTGGTAGCTGAGTTTACTTGATTGGCTGTATTTAAGATATCATTG
TAAACGACTTGTAAAGCGTCATCTGACATTATGACGTCACCTTGagc
Run BLAST on NCBI

transcript from alignment at scaffold_226:566106..567360-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053177 ID=TCONS_00053177|Name=TCONS_00053177|organism=Clytia hemisphaerica|type=transcript|length=1255bp|location=Sequence derived from alignment at scaffold_226:566106..567360- (Clytia hemisphaerica)
AACATCCCATACATCATTCGAAACACTGTACAGGCTAGTGTCTTTCCTGT
GATAGTCTACGACAAGCATGTATTCCGGACCCGGGGGGGGGGGGGGGGCA
CTGAATTTCTAAACCTTCTAGAACTTTATAGTGTACTCTATCAAAAGTAC
ACCCTTACAGTGTATTTCGAGGGTCTCGAAAAACCTACCCTTAAGGACGG
CAAATGCCGTGGGTTGGACCATATGAGTGCCCCCTCCCCCGGATTCCGGA
TGGATGACAGACGTTTGCATGCCTGGTTCTACAAAACATTATGTAAACAA
ATTCTTTTATTAAATTTCGTTAAATGCACGTTCTGATATAAGCAAAAAAT
GTTTTTCTTTTCCTTTCTCTGACAAAGCTTGCTCCACATCCGTGTCAATC
AAATGTGAAAAAGTTTTGAAATCAAAGCTGATGAGTAAGCAAACGATATT
ACTCTTATTTAAAAACAAAACCTTTAAATCAACCGTTAAGTTTTAGGTCA
TTTTGACCAGAGTGAGTACATGATAAAATTGTGCAGAAATTCATCGGCTG
GGCTAAAATTCATCAATGGTAAAACGAGAACTTTTCAGCTTTAGTGTCTT
TAAAATGGTACATTGGAACTACTCGAGCTCTCTTCTCAGGCGACGCTACA
TCCTTGAAATGGTACATTGGAACTACTCGAGCTCTCTTTTCAGGCGATGC
TACATCCTTAAAGTGGTACATTGGAACTACTCGAGCTCTCTTCTCAGGCG
ACGCTACATCCTTAAAGTGGTACATTGGTACATTGCGCGATCTCTTCCTA
GACGATACTGCATCCTTAAAATGGTACATTGGAACTTTGTGAGCTCTCTT
CTCTGGCGACGCTACATCCTTAAAGTGGTACATTGGAACTTTGTGAGCTC
TCTTCTCTGGCGACGCTCCATCCTTGAAGTGATACATTGGAACTCTCTTG
GCAGCCCTAGAATCAAAATGGTAGATAGGGACCCTCTCAGATGCGGTATC
TTTGTAACGGTGAAGCCAAGGGCTGAATCCGTTTCCATAACCTTCTCGTT
TATCAGCGTCAGCATTTATTTGACTGATGTGTGGTTTGTTTTTCTCACTT
CCGCAATCTTCGACATCCGGATTACAAGACGAGTACCGGTTCCCTACGGC
ACGTTTCAGTTCGCTGGTAGCTGAGTTTACTTGATTGGCTGTATTTAAGA
TATCATTGTAAACGACTTGTAAAGCGTCATCTGACATTATGACGTCACCT
TGAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033561XLOC_033561Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053177-exon-scaffold_226-1575043694:566712..567360TCONS_00053177-exon-scaffold_226-1575043694:566712..567360Clytia hemisphaericaexon
TCONS_00053177-exon-scaffold_226-1575043694:566534..566657TCONS_00053177-exon-scaffold_226-1575043694:566534..566657Clytia hemisphaericaexon
TCONS_00053177-exon-scaffold_226-1575043694:566106..566479TCONS_00053177-exon-scaffold_226-1575043694:566106..566479Clytia hemisphaericaexon
TCONS_00053177-exon-scaffold_226-1510915933:566712..567360TCONS_00053177-exon-scaffold_226-1510915933:566712..567360Clytia hemisphaericaexon
TCONS_00053177-exon-scaffold_226-1510915933:566534..566657TCONS_00053177-exon-scaffold_226-1510915933:566534..566657Clytia hemisphaericaexon
TCONS_00053177-exon-scaffold_226-1510915933:566106..566479TCONS_00053177-exon-scaffold_226-1510915933:566106..566479Clytia hemisphaericaexon
TCONS_00053177-exon-scaffold_226-1491911889:566712..567360TCONS_00053177-exon-scaffold_226-1491911889:566712..567360Clytia hemisphaericaexon
TCONS_00053177-exon-scaffold_226-1491911889:566534..566657TCONS_00053177-exon-scaffold_226-1491911889:566534..566657Clytia hemisphaericaexon
TCONS_00053177-exon-scaffold_226-1491911889:566106..566479TCONS_00053177-exon-scaffold_226-1491911889:566106..566479Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_226supercontigscaffold_226:566106..567360 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.446427	0.28251	0.241169	0	0	0	0	0	0	0	0	0	0.241585	2.92461	1.85519	0	0	0.812952	3.6941	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053177 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top