TCONS_00053155 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053155
Unique NameTCONS_00053155
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2261

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053155 ID=TCONS_00053155|Name=TCONS_00053155|organism=Clytia hemisphaerica|type=transcript|length=2261bp
GGAAAATTGTCAACCTTTTTACGCTAATCACACACAAGACCAATGGAAGA
CTCTGTCAATTGTTGGGATTGCCACACCCATTTCTGTTGCAATTGCTATT
ATTGTTCTTGTCAAAATCTATCTACGACGTTGCAAGTCATCAAGTGTCGA
AAGCGAGGACCCCGAGattttcccAGTGGTGCGAGAAGAGGAAGAAAGCA
CCTTACGTCCAAGAAATCCGGACGGTTTAGAACCGATCTATGAAACTATA
CCAAACATCAGTGTCCGAAACTACGATACTTTAAATGGTGTGACGTGAAC
CCAGAGGCTTGTGGTTACGTGGGATCGTCAGGGAGTTCTCTAGGCTTCAG
AGAATAAATCACAAACAAAGATGGAAAACCTTGTTGATGAAAACAAAGAT
GAAGTAGCAGAAACGCAACGTTTTGGTACCTTAAAACGCATTGGGATGTT
GTCCTTCAGATTGGCTGTTTGTGGACTGTCATTGGTGGACTTTTGGACAG
ATTTTCTTCTTGGTTTTGAGTATGCTGGACAAGGGGAAGCAGTTTATGCG
ACTTTCACGTTTTGTTCACGTTAATACCAACGGCGTTTGGAGCTTTATAC
GTTATACGTTATCTTCGACGAAAAGGTGAACTTACCATTgttgacaaaat
tctttttgtcTGCTGTTTATTCCTTCAAACGCACTTTGTGGTGCCTATTT
GGTTGATCGAGGATACATTCAAAAAACAGCCTAAGATAAATAAAAGTGaa
cgaaagaagaaagaaagagTTGAAAACGTCTTAACGATGTTTGATGCATT
CGAAGCGTTACCTCAATTATCCTTCCAGCTTGCGGTTTTGCTTGGAGATC
AAGCGGGTATTGCACATTTCTGCAGCTTTTTACAGTTCTCTCATCACTCT
TCACTGGTGCTTGGAAACTAACCAAACTTATTGGTATCGAGAAGACagct
ttgaaagtttttatgGTTGTTATCAATTTTTCATGGCTGTTGCCTGAATC
TGTTAGTCTTGGATTACTTGCTAATAAAGCAAAGATTGTATCTTACATCG
CTACACCAATCAAATTCCTAATCATCGCTATCCTTAATCTGATATATGTC
GGAAAATCGAATGctgtaaagaaaaaatgttCCGATTGGTTGAAGAGTCT
CATTTTTAGTTCATTTGTGCCTTTCTATATGTTTTCAAGGATAGGTGCTT
ATTTGGTGATCTTCTTGCTGTTCGCTCAAGTTTTACTTATGACGCTTTAT
ACAGTAGGGCCATATAAcaatggtgttttttttaaacgTAATGGTAATAC
AACTTGGGTTATCTTTGCTATAGGATTTGAGGTGGATCTAGCAGTTGTGT
ACAATAATGGAGGAAATGTAACTGTGTACGCACTCACCCTATTTGCAATT
ATTTCTAGCTTGGTGCTTTTATCtaaaagttgttgttgttgtagtcTTAC
ACCTTTTCTTGATATCGAAGTTGAGAGGGACACGAACAATATTCAAGAAG
TTGAATTGGTGAATGAAAGTCAAGCGTGAAAAACTTGCTATTACACAAAT
TTGTCCTTTTCACTGCTAACCTGTCAAAGGTGGTTGTTGAAATACCCGAG
TTTTATAAGGAATACTTTATGTAAAACCTTTCTGGCTTAAATAAACAAAG
TTTAAGAACAAAATGACTCTGGAATTGTTGAATCTGACGCATTGAAGTCA
Atcagttacacgtttttttacaagaatgctcctgaaatattcttacggta
atTCTTAGGTTTGGATCCAAATCCAGCCAaaatctacattttttttttta
aataacatccaaaatttttgaagctttcggatgttcttaacttttcgagt
cTTATATTCTTCtataaatattcttaacgtgttcttattttgaccatttt
gtgaatatttttgaccgttttcctaagaaatagggtatttttgagtccac
aaagctttaaaatgttcttaacttgttcttaacattttgaccagagaagc
cttatgttcttatatagtttgttcttataaaaaaacgtttatcatgtaat
acatacctgaagcaaaaatttggcatTTCTGAGGAACCTTTTAGCACTGC
TGGGGAATAATTGGCAATTCAATGGCagaatgctctaaaaataaaatagc
atattcttagcttgagtagcaaatttccatgatggtgatattcttagcat
tgttttttggccaatttcatcataaatggTCCTATaaattatattcttat
aaaaaaatggt
Run BLAST on NCBI

transcript from alignment at scaffold_226:469651..475354+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053155 ID=TCONS_00053155|Name=TCONS_00053155|organism=Clytia hemisphaerica|type=transcript|length=5704bp|location=Sequence derived from alignment at scaffold_226:469651..475354+ (Clytia hemisphaerica)
GGAAAATTGTCAACCTTTTTACGCTAATCACACACAAGGTGAGGTGTAAT
CTTAAACTGTTCATAAAAcgaaatgggctattccagaaaagatTTGTGTC
CCCTATTGTGAGGAGGTATTTTTTTGGAGAGGatcccctggatttttttt
tcaattttcaggacccccttggattttCGACTTCgttatactgaccaccc
tggtTTTTCCGACTCCTCTTGCAGATCACCCTGGATTTTCACACTCCAAA
AACCAGACCCCTCGGATTTCTatttttccagaccaccctgatCGTCACAC
CTTCTTAACATAGGGGGGCGACTATTTCTGGAACGGcccctttttcattt
ttataccgaataataaactttaaaatcttaaacgGGCCATTAGAGCTCTA
CCTTCAGTAATCACTTAACTTTATGATGGAAATGCCCTTACTACAGCAAC
CTTGCCCAACTCAATCAATAACCTTCGACAAAAAATGCCCAACACTACGG
AAAACCTATTGTGTACAAAGTAAAGAAACGTATTGAAGGAACTTTATAAT
ACTGTCAAATGTAGCATTGGTGTAGTGGTAACACAAAACACGTTTTTTTG
AGAATGTAAATAAAAGACGAATAACCTAAACCTAGTGTGTTTCTTGTATT
GCAGGCGAAGAAAATTGTCAACAAACGTCTCCAGAAGAAGGTAAATCCCT
TTTCCCTGACTTTCTTTAAAGTTTTTCAACGACATTTCCAATAAGTCACA
TTCCTGAGAAAATATTGAGAATCGAATAACGAAAAAGGTCATTTTAATTG
TTACAGCTTGAAATGTTTGACGCTATTTGACCCTTTTAGACTCTAGTCTA
AACTTTCAAGAACTTCATGTCAGGCTCCGTAGGGGATCTGGCCAGTTTTG
GGGGCCGCTTTGATGATTTTCATCTAGATTTCGGATGAAAATTAACGTAA
TTTTTGAGCGTGGcgattggctaaagcaaaacaatcacGCAAAATTTAAC
GTCAATTATAACCATAAACATGTCATTAGAACTTGTtgcttttcaatttt
gtttccaagaaaaaaatttttcactgttcgttttcaattttttagctGAG
CCAGGTCATCAGGTTCTAACAAAACCTTAGTTGTgtaccatcatagaatt
tttcTCTCTACTCCGATATAATGTAACATTTGTCAATATTTTCTTCAGAC
CAATGGAAGACTCTGTCAATTGTTGGGATTGCCACACCCATTTCTGTTGC
AATTGCTATTATTGTTCTTGTCAAAATCTATCTACGGTAAGCTATCTGAA
CCTATATGGCTAGAAATAAGGAATTTTGTGACCTTTTGAGGCCTTTTTTA
AATTGTAAAGCTTTCTTATGTCAAAAAATTCGTACGTGGTGTCCAAATTA
TTTTCGATATAGACTTTGAAGTTCTCTTCCGTTTTTTTGTGACCTCACTC
TTCGGTATCTTTCACCTTTTAAACCTTTGTAAGCCAAATTAATGAGAAAT
ATGTAAATGATTTCTTTTAAATGACCATTTTTTGGCATGGAAATTACCTA
TGCATGCGTCTATGCATGAATTATTTTGGCTACTATTTTTATATAACTGA
TTCCTATTCCTTTTGTTCTCTCACCAGACGTTGCAAGTCATCAAGTGTCG
AAAGCGAGGACCCCGAGGTATTTATTCTTCTAAATCTATTCAATCTATTT
CCTCAATCTCAAAGCaatgttcttttgttttcatttttctgttccACCAT
AGCCGTACCTAGAATGatatgataacatctgaatttctgggcccagattc
aaagatatctaaagggctacttagactacacaatatattgacgagcaata
tttgacaatatcgtTTTCGGACCGTAACGAAGTAAATAACAAGTGCTATA
TTATAAAAAGcaagcaatatatcatcaatatattgtctgacaatatattg
tgtagttgTGTAACCATTAACATCAAAACTttgttgtgaaggaaaataTG
AGAGAAATTCCAAAAACTACTATCTACCTAGAATAAACTGGCAAAATTGT
CGTTCTTATAGAGTCAACTAACTGAAAATACAATGCGGTGAACATTCCAG
CCACGGCTTTCTCACACTATGGTTCCACTCCAAATCTACTGTTTCCATTT
GTTGATGATTAGGTGTTAAAAAAGGAATAGGAATCTTATCTTTAGGAACT
TCAGTGAAgggattttttttcagatattcAGCTCCTTCACAATCATTTGC
CTTAGAAAACATTACTTTTTACACTTTAACTAATCAAGCATTTGACCGGG
GGAAATAAATGCGATAATTCATTCACGTGAAAGTCAGGGTATTCGAAAAT
CAGCTCGGCTCAAATTTTGTTTTACGCTAACGGTTGTAATTCGCGTTAAT
AACTTGAGCAGTTATATAAGTGTCACAATGTAATTATTCTCTTCATTTAA
GAGCCATGTCTAAAAGTCATTTtgcattcttttgttttgaaaatccgAAC
CTTAAGCCGTTTTTAATTTGCTCTAAACAAAATTGAGCCTAGCTATCTAA
GATTAAAATAAGCCTTTTTCATACAGTCTTACCGTGCAATAACCCATTTC
AGAAATTTAAAATTGTGATGTCTTTTGTTATTGAGAGCTGACAGTTTTTA
AGAAatctaaaatatgtttttcGATATCCCTTtcttttttgcagattttc
ccAGTGGTGCGAGAAGAGGAAGAAAGCACCTTACGTCCAAGAAATCCGGA
CGGTTTAGAACCGATCTATGAAACTATACCAAACATCAGTGTCCGAAACT
ACGATACTTTAAATGGTGTGACGTGAACCCAGAGGCTTGTGGTTACGTGG
GATCGTCAGGGAGTTCTCTAGGTGAGTGAGTTTCAAAATacagaaaataa
ttttccttctAAAATACAGAGAATTACTTTCCTTACAAAATACAGAGAAT
TACTTTCCTTATAAAAAGATACAGAAAATTACTTTCCTTATAAGatactg
aaaattatttttctcccAAGATACAGTTAGCCAGTTTCCCTTCAAAATAC
AGCaacggttttccttcaaaaatacagaaaatGATTTCCCTTTCCCTTCA
AAAAccaggaaataatttttcttccaaaatacAGGGAATGATTTTTCCTT
CCAAAATACAGGGAATGATTTTCCTTCCAAAATacaggaaataatttttc
ttaaaaaatacagggaatgatttttcttccaaaatacAGGGAATGATTTT
CCTTCCACAATACAGGGAATGATTTTTCTTCCACAATACAGGGaatgatt
ttccttcaaaaatacagggAATGATTTTTCTTCCACAATACAGGGaagat
tttccttcaaaaatacagggAATGATTTTTCTTCCACAATCCAGGGTAtg
gttttccttcaaaaatacagggAATGATTTTTCTTCCACAATCCAGGGaa
tgattttccttcaaaaatacaggaatGATTTTTCTTCCACAATACAGGGa
atgattttccttcaaaaatacagggAATGATTTTTCTTCCACAATACAGG
Gaatgattttccttcaaaaatacagggaatgatttttctttccaaaatac
AGGAAATAATTTTGCTATCGTTTTTTAGTTTATAAGCCTAGATGTTCTTA
TTAATTGTTCCAATAAAACGTGTTTGTTTGGGAACTCAGAAGGTTGCTTC
CCAACCATTTGTAGCTTTCTAAACATGAAGTTTGACGCACATTTCAAATG
ACTtcgtgttaaaaaaaattccttttttgatTTCAGGCTTCAGAGAATAA
ATCACAAACAAAGATGGAAAACCTTGTTGATGAAAACAAAGATGAAGTAG
CAGAAACGCAACGTTTTGGTACCTTAAAACGCATTGGGATGTTGTCCTTC
AGATTGGCTGTTTGTGGACTGTCATTGGTGGACTTTTGGACAGATTTTCT
TCTTGGTTTTGAGTATGCTGGACAAGGGGAAGCAGTTTATGCGACTTTCA
CGTTTTGTTCACGTTAATACCAACGGCGTTTGGAGCTTTATACGTTATAC
GTTATCTTCGACGAAAAGGTGAACTTACCATTgttgacaaaattcttttt
gtcTGCTGTTTATTCCTTCAAACGCACTTTGTGGTGCCTATTTGGTTGAT
CGAGGATACATTCAAAAAACAGCCTAAGATAAATAAAAGTGaacgaaaga
agaaagaaagagTTGAAAACGTCTTAACGATGTTTGATGCATTCGAAGCG
TTACCTCAATTATCCTTCCAGCTTGCGGTTTTGCTTGGAGATCAAGCGGG
TATTGCACATTTCTGCAGCTTTTTACAGTTCTCTCATCACTCTTCACTGG
TGCTTGGAAACTAACCAAACTTATTGGTATCGAGAAGACagctttgaaag
tttttatgGTTGTTATCAATTTTTCATGGCTGTTGCCTGAATCTGTTAGT
CTTGGATTACTTGCTAATAAAGCAAAGATTGTATCTTACATCGCTACACC
AATCAAATTCCTAATCATCGCTATCCTTAATCTGATATATGTCGGAAAAT
CGAATGctgtaaagaaaaaatgttCCGATTGGTTGAAGAGTCTCATTTTT
AGTTCATTTGTGCCTTTCTATATGTTTTCAAGGATAGGTGCTTATTTGGT
GATCTTCTTGCTGTTCGCTCAAGTTTTACTTATGACGCTTTATACAGTAG
GGCCATATAAcaatggtgttttttttaaacgTAATGGTAATACAACTTGG
GTTATCTTTGCTATAGGATTTGAGGTGGATCTAGCAGTTGTGTACAATAA
TGGAGGAAATGTAACTGTGTACGCACTCACCCTATTTGCAATTATTTCTA
GCTTGGTGCTTTTATCtaaaagttgttgttgttgtagtcTTACACCTTTT
CTTGATATCGAAGTTGAGAGGGACACGAACAATATTCAAGAAGTTGAATT
GGTGAATGAAAGTCAAGCGTGAAAAACTTGCTATTACACAAATTTGTCCT
TTTCACTGCTAACCTGTCAAAGGTGGTTGTTGAAATACCCGAGTTTTATA
AGGAATACTTTATGTAAAACCTTTCTGGCTTAAATAAACAAAGTTTAAGA
ACAAAATGACTCTGGAATTGTTGAATCTGACGCATTGAAGTCAAtcagtt
acacgtttttttacaagaatgctcctgaaatattcttacggtaatTCTTA
GGTTTGGATCCAAATCCAGCCAaaatctacatttttttttttaaataaca
tccaaaatttttgaagctttcggatgttcttaacttttcgagtcTTATAT
TCTTCtataaatattcttaacgtgttcttattttgaccattttgtgaata
tttttgaccgttttcctaagaaatagggtatttttgagtccacaaagctt
taaaatgttcttaacttgttcttaacattttgaccagagaagccttatgt
tcttatatagtttgttcttataaaaaaacgtttatcatgtaatacatacc
tgaagcaaaaatttggcatTTCTGAGGAACCTTTTAGCACTGCTGGGGAA
TAATTGGCAATTCAATGGCagaatgctctaaaaataaaatagcatattct
tagcttgagtagcaaatttccatgatggtgatattcttagcattgttttt
tggccaatttcatcataaatggTCCTATaaattatattcttataaaaaaa
tggt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033549XLOC_033549Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053155-exon-scaffold_226-1491911889:469651..469688TCONS_00053155-exon-scaffold_226-1491911889:469651..469688Clytia hemisphaericaexon
TCONS_00053155-exon-scaffold_226-1510915933:469651..469688TCONS_00053155-exon-scaffold_226-1510915933:469651..469688Clytia hemisphaericaexon
TCONS_00053155-exon-scaffold_226-1575043694:469651..469688TCONS_00053155-exon-scaffold_226-1575043694:469651..469688Clytia hemisphaericaexon
TCONS_00053155-exon-scaffold_226-1491911889:470849..470936TCONS_00053155-exon-scaffold_226-1491911889:470849..470936Clytia hemisphaericaexon
TCONS_00053155-exon-scaffold_226-1510915933:470849..470936TCONS_00053155-exon-scaffold_226-1510915933:470849..470936Clytia hemisphaericaexon
TCONS_00053155-exon-scaffold_226-1575043694:470849..470936TCONS_00053155-exon-scaffold_226-1575043694:470849..470936Clytia hemisphaericaexon
TCONS_00053155-exon-scaffold_226-1491911889:471278..471317TCONS_00053155-exon-scaffold_226-1491911889:471278..471317Clytia hemisphaericaexon
TCONS_00053155-exon-scaffold_226-1510915933:471278..471317TCONS_00053155-exon-scaffold_226-1510915933:471278..471317Clytia hemisphaericaexon
TCONS_00053155-exon-scaffold_226-1575043694:471278..471317TCONS_00053155-exon-scaffold_226-1575043694:471278..471317Clytia hemisphaericaexon
TCONS_00053155-exon-scaffold_226-1491911889:472345..472521TCONS_00053155-exon-scaffold_226-1491911889:472345..472521Clytia hemisphaericaexon
TCONS_00053155-exon-scaffold_226-1510915933:472345..472521TCONS_00053155-exon-scaffold_226-1510915933:472345..472521Clytia hemisphaericaexon
TCONS_00053155-exon-scaffold_226-1575043694:472345..472521TCONS_00053155-exon-scaffold_226-1575043694:472345..472521Clytia hemisphaericaexon
TCONS_00053155-exon-scaffold_226-1491911889:473437..475354TCONS_00053155-exon-scaffold_226-1491911889:473437..475354Clytia hemisphaericaexon
TCONS_00053155-exon-scaffold_226-1510915933:473437..475354TCONS_00053155-exon-scaffold_226-1510915933:473437..475354Clytia hemisphaericaexon
TCONS_00053155-exon-scaffold_226-1575043694:473437..475354TCONS_00053155-exon-scaffold_226-1575043694:473437..475354Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_226supercontigscaffold_226:469651..475354 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0935244	0.437739	0.125886	0	0.464932	0.499093	0.389607	0.197578	0.137882	0.192988	0.421286	0.0242699	0.638766	0	0.348274	0.551676	0.387981	0.209279	0.650585	0.138703	0.569951	0	0.432209	0.741103	0.298659	0.539478	0.469628	0.189333	0.109761	0.104275
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053155 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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