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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053095 ID=TCONS_00053095|Name=TCONS_00053095|organism=Clytia hemisphaerica|type=transcript|length=1851bp
AAATATTAGACAAACCGAACGTTCGCTAAAAAATACTTAATTACCAGCGA
TGCGATGTATTATGTCGCACCTTTAggccatgttcgcacgtgacagttcc
gtttcgctccgaaacgaaatgaagccattctattggctACATTCAAatgt
tacgtcacttctaaccaatagaaTGGCTTCATTCCGTTTCggagcgaaac
ggaaccgtcacgtgcgaacatggtcttaatgtaattttttgataaattaa
tAATATTTAATATCTTCTTCTATTTCTAGTgtgaaaaataaaaggaaaaa
aaaaacaatggacGGTTTCAAAGACAAACAAAAGAAGAGTCTCTTACTgt
gttgtttttgtttcgacaagaaatccgccatttttgttATTTCAGCGTTG
GCAATCTTTCATTCTGCAGTAAACATCACCTTGGCAACAAAAGTTGTGAC
AGAGGATTCACCGCACCACGTTTACGTTATCGCAATCTCCGTCAAAGCTT
ATGACGCGCCGTCTCACGTACAAAACATTTTTACACAATTGGCACTAGCC
AAAATCGCTGTATTCATAACACACTTGCTAGCAAGCATTTCGTTAATTTT
GGCGCTTCGTTGTGGAAAGAGATATTTGTTGATATCGGCACCTGTTTTCG
TGATAACTGAGATATTAGCATTGATATACACAGTGGTGGAGTGTCTGTTT
ACAGTTTTTCAACTGGACGATTCTACTTCTCAAGGACTAGTACTGATTGC
TATGTTTATATCAGTAGCTTTCATGGCTTGGTGTACCATTATTGTTGTGA
CGTATGCAAGACAAAGTTACGTGACCGAGCAACGAAAAAATTGGACAGTG
TTGAATAAAACGTGTTTAATCGCGTACAGTAAAAGTGTTGAAGTGGAAAC
CACAGAGTTGACGACTGATGAAGTCTAATGGAAACTGATGATCTGTGGAA
ATTCGATTGGGTCGCTTGTACGAACCCTATATTTCTTGCCCCGGGACGTT
CCGAAACTAACATTCTCGATCCGTGGTAACGTACTGTACCGAAGCGATAC
AAGACCGTAACGTCTGACCATAGTCTTAGTACAAGACCTATCCTTTTAGC
CAAGGAGAGCTCTGGAATCACAACGTCCCAGTTTACGAACCGTATAATAA
CACATTTCTTAAGCCTTAAGGATATTTTAAATCATACCCTCCCCATTTGA
GACAAAGGTGTTCGAAATAACTGTATTTACGCATAGGCCATTTCACTGTC
GAAATGAAACTTCTTCAAAACATGTAGTTGCGAAGACCAAGGTTTTTTAT
AAAAGGTTATGAGTAATCTAAAAATCAATAcacttaggtgccaaataaac
gggccccctgcttgttaatttttcgaaaattttccaaccccccggacctt
attaggatcCCCCCACcccgtttattagtttttaagaaTACTTTCAGCTg
acaaagagaaggccccttattttgctctaaatagcctgattttgggtttt
cagaagtacaatttccaacccttCCATTTATTCAACCCCCCCCCATCCGT
CTATTTGGCATCTAAGAATAATTAATAATCAATAGTTTTGATCTTTACAC
CATCTCACCATCTCAGCCACGAATTTGGGGTTTGTCTTTTGTGTGTGAAT
GACTCTTAGCactatttaatttgaaaatacgAAAATGTCCAGGCAAAAGT
AATAATATCATCAAACTATCATTAATctcaaaattatgacaaaatataaa
atcttcTGTGTTATGCAAAATTTTTAGCTagttattataattttttagaG
TTTAAAAGGAGACATTGTGtgatttattttaaaagatATGCTATAAAAAT
A Run BLAST on NCBI protein sequence of TCONS_00053095-protein >TCONS_00053095-protein ID=TCONS_00053095-protein|Name=TCONS_00053095-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp
MDGFKDKQKKSLLLCCFCFDKKSAIFVISALAIFHSAVNITLATKVVTED
SPHHVYVIAISVKAYDAPSHVQNIFTQLALAKIAVFITHLLASISLILAL
RCGKRYLLISAPVFVITEILALIYTVVECLFTVFQLDDSTSQGLVLIAMF
ISVAFMAWCTIIVVTYARQSYVTEQRKNWTVLNKTCLIAYSKSVEVETTE
LTTDEV Run BLAST on NCBI transcript from alignment at scaffold_226:27925..30166+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053095 ID=TCONS_00053095|Name=TCONS_00053095|organism=Clytia hemisphaerica|type=transcript|length=2242bp|location=Sequence derived from alignment at scaffold_226:27925..30166+ (Clytia hemisphaerica)
AAATATTAGACAAACCGAACGTTCGCTAAAAAATACTTAATTACCAGCGA
TGCGATGTATTATGTCGCACCTTTAggccatgttcgcacgtgacagttcc
gtttcgctccgaaacgaaatgaagccattctattggctACATTCAAatgt
tacgtcacttctaaccaatagaaTGGCTTCATTCCGTTTCggagcgaaac
ggaaccgtcacgtgcgaacatggtcttaatgtaattttttgataaattaa
tAATATTTAATATCTTCTTCTATTTCTAGTgtgaaaaataaaaggaaaaa
aaaaacaatggacGGTTTCAAAGACAAACAAAAGAAGAGTCTCTTACTgt
gttgtttttgtttcgacaagaaatccgccatttttgttATTTCAGCGTTG
GCAATCTTTCATTCTGCAGTAAACATCACCTTGGCAACAAAAGTAAGTAC
AAATCAGTACTTATCACGAACCAATCTCGATTTCAAGCCTCTATACACTT
TTTACGCGCGTaaatttaccccaaatttaACATATAGAAAATTAGAACTA
GTAGCCTAGTAGATGTATACATTATACACGGCCAGTAAAAATAAAGGAAA
CAATTGCCTTCCTCGACAaccctaaatttctttttgtggtATGCGTAATT
TTGATTATTATATATGGTTAAAATATTGTGCAATATAGACTGAATAGCCA
GGAATAGCAGACCTCTATAAATATACTTTCTATATTTTTTACCATGCTAG
GTCAAAGTTTTATATCTCACAAAGACAAAATGTCTTAAATCCGAGTTTAA
ATTGTTAATGATATTTTACACTTTCGCTTACAGGTTGTGACAGAGGATTC
ACCGCACCACGTTTACGTTATCGCAATCTCCGTCAAAGCTTATGACGCGC
CGTCTCACGTACAAAACATTTTTACACAATTGGCACTAGCCAAAATCGCT
GTATTCATAACACACTTGCTAGCAAGCATTTCGTTAATTTTGGCGCTTCG
TTGTGGAAAGAGATATTTGTTGATATCGGCACCTGTTTTCGTGATAACTG
AGATATTAGCATTGATATACACAGTGGTGGAGTGTCTGTTTACAGTTTTT
CAACTGGACGATTCTACTTCTCAAGGACTAGTACTGATTGCTATGTTTAT
ATCAGTAGCTTTCATGGCTTGGTGTACCATTATTGTTGTGACGTATGCAA
GACAAAGTTACGTGACCGAGCAACGAAAAAATTGGACAGTGTTGAATAAA
ACGTGTTTAATCGCGTACAGTAAAAGTGTTGAAGTGGAAACCACAGAGTT
GACGACTGATGAAGTCTAATGGAAACTGATGATCTGTGGAAATTCGATTG
GGTCGCTTGTACGAACCCTATATTTCTTGCCCCGGGACGTTCCGAAACTA
ACATTCTCGATCCGTGGTAACGTACTGTACCGAAGCGATACAAGACCGTA
ACGTCTGACCATAGTCTTAGTACAAGACCTATCCTTTTAGCCAAGGAGAG
CTCTGGAATCACAACGTCCCAGTTTACGAACCGTATAATAACACATTTCT
TAAGCCTTAAGGATATTTTAAATCATACCCTCCCCATTTGAGACAAAGGT
GTTCGAAATAACTGTATTTACGCATAGGCCATTTCACTGTCGAAATGAAA
CTTCTTCAAAACATGTAGTTGCGAAGACCAAGGTTTTTTATAAAAGGTTA
TGAGTAATCTAAAAATCAATAcacttaggtgccaaataaacgggccccct
gcttgttaatttttcgaaaattttccaaccccccggaccttattaggatc
CCCCCACcccgtttattagtttttaagaaTACTTTCAGCTgacaaagaga
aggccccttattttgctctaaatagcctgattttgggttttcagaagtac
aatttccaacccttCCATTTATTCAACCCCCCCCCATCCGTCTATTTGGC
ATCTAAGAATAATTAATAATCAATAGTTTTGATCTTTACACCATCTCACC
ATCTCAGCCACGAATTTGGGGTTTGTCTTTTGTGTGTGAATGACTCTTAG
CactatttaatttgaaaatacgAAAATGTCCAGGCAAAAGTAATAATATC
ATCAAACTATCATTAATctcaaaattatgacaaaatataaaatcttcTGT
GTTATGCAAAATTTTTAGCTagttattataattttttagaGTTTAAAAGG
AGACATTGTGtgatttattttaaaagatATGCTATAAAAATA Coding sequence (CDS) from alignment at scaffold_226:27925..30166+ >TCONS_00053095 ID=TCONS_00053095|Name=TCONS_00053095|organism=Clytia hemisphaerica|type=CDS|length=1242bp|location=Sequence derived from alignment at scaffold_226:27925..30166+ (Clytia hemisphaerica)
atggacGGTTTCAAAGACAAACAAAAGAAGAGTCTCTTACTgtgttgttt
ttgtttcgacaagaaatccgccatttttgttATTTCAGCGTTGGCAATCT
TTCATTCTGCAGTAAACATCACCTTGGCAACAAAAGTTGTGACAGAGGAT
TCACCGCACCACGTTTACGTTATCGCAATCTCCGTCAAAGCTTATGACGC
GCCGTCTCACGTACAAAACATTTTTACACAATTGGCACTAGCCAAAATCG
CTGTATTCATAACACACTTGCTAGCAAGCATTTCGTTAATTTTGGCGCTT
CGTTGTGGAAAGAGATATTTGTTGATATCGGCACCTGTTTTCGTGATAAC
TGAGATATTAGCATTGATATACACAGTGGTGGAGTGTCTGTTTACAGTTT
TTCAACTGGACGATTCTACTTCTCAAGGACTAGTACTGATTGCTATGTTT
ATATCAGTAGCTTTCATGGCTTGGTGTACCATTATTGTTGTGACGTATGC
AAGACAAAGTTACGTGACCGAGCAACGAAAAAATTGGACAGTGTTGAATA
AAACGTGTTTAATCGCGTACAGTAAAAGTGTTGAAGTGGAAACCACAGAG
TTGACGACTGATGAAGTCTAAatggacGGTTTCAAAGACAAACAAAAGAA
GAGTCTCTTACTgtgttgtttttgtttcgacaagaaatccgccatttttg
ttATTTCAGCGTTGGCAATCTTTCATTCTGCAGTAAACATCACCTTGGCA
ACAAAAGTTGTGACAGAGGATTCACCGCACCACGTTTACGTTATCGCAAT
CTCCGTCAAAGCTTATGACGCGCCGTCTCACGTACAAAACATTTTTACAC
AATTGGCACTAGCCAAAATCGCTGTATTCATAACACACTTGCTAGCAAGC
ATTTCGTTAATTTTGGCGCTTCGTTGTGGAAAGAGATATTTGTTGATATC
GGCACCTGTTTTCGTGATAACTGAGATATTAGCATTGATATACACAGTGG
TGGAGTGTCTGTTTACAGTTTTTCAACTGGACGATTCTACTTCTCAAGGA
CTAGTACTGATTGCTATGTTTATATCAGTAGCTTTCATGGCTTGGTGTAC
CATTATTGTTGTGACGTATGCAAGACAAAGTTACGTGACCGAGCAACGAA
AAAATTGGACAGTGTTGAATAAAACGTGTTTAATCGCGTACAGTAAAAGT
GTTGAAGTGGAAACCACAGAGTTGACGACTGATGAAGTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053095-exon-scaffold_226-1491911889:27925..28366 | TCONS_00053095-exon-scaffold_226-1491911889:27925..28366 | Clytia hemisphaerica | exon |
| TCONS_00053095-exon-scaffold_226-1510915933:27925..28366 | TCONS_00053095-exon-scaffold_226-1510915933:27925..28366 | Clytia hemisphaerica | exon |
| TCONS_00053095-exon-scaffold_226-1575043694:27925..28366 | TCONS_00053095-exon-scaffold_226-1575043694:27925..28366 | Clytia hemisphaerica | exon |
| TCONS_00053095-exon-scaffold_226-1491911889:28758..30166 | TCONS_00053095-exon-scaffold_226-1491911889:28758..30166 | Clytia hemisphaerica | exon |
| TCONS_00053095-exon-scaffold_226-1510915933:28758..30166 | TCONS_00053095-exon-scaffold_226-1510915933:28758..30166 | Clytia hemisphaerica | exon |
| TCONS_00053095-exon-scaffold_226-1575043694:28758..30166 | TCONS_00053095-exon-scaffold_226-1575043694:28758..30166 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_226 | supercontig | scaffold_226:27925..30166 + |
Blast
The following BLAST results are available for this feature:
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