TCONS_00052261 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052261
Unique NameTCONS_00052261
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length810

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052261 ID=TCONS_00052261|Name=TCONS_00052261|organism=Clytia hemisphaerica|type=transcript|length=810bp
CGATTCTTCTTCGATGTTGTAATAAAAAAGGGTTTGACCACCTTCTAATT
GTCTGTCAGCGAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTA
TCttgaattttggctttgacGTTGTCGATAGTATCATTTGGTTCGACTTC
TAAAGTAATAGTTTTACCAGATGAGGTTTTGACAAAGATTGTCATTGACC
GAATGGGAACGGAAGGCAAGACCAAGTTAAGGGTGGATTCCTTTTGGATG
TTGTAGTCGGAAAGGGTTCGGCCATCCTCTAATTCTTTGCCAGCGAAGAT
CAAACGTTGTTGATCTGGTGGGATTCCTTCTTTATCttgaattttggctt
tgacGTTGTCGATAGTATCATTTGGTTCGACTTCCAAAGTGATGgctttc
attttgaatttgacgAAGATTGAAAAAGATCGTTTTCGCAAAACTAAACG
AAAATTCGATTCAATTAGTATTTGTTCTAACAATATATCTTTGTATTTTA
ACTCCTTGTCTTGGTAGGTCAAATAGTACTGAGCCGAGGAAAGTCCAAGG
TCTTCCTCTATTATCTCTAGAGGTATTTTACTTGAGCTTACGACAAAAGA
TGAGTGCTTTCCATCAAAGGTTCATCTTGAGGCTGAATTACACAATCAGA
TGAACAGGTGGCACCATTCAAGCTCGAAGCCGTAAGTTGCTGCGTAGCTG
GTTTTGAATTataacttattttttttagatttggtGCCAAGGCTTGCTTT
GAACTGGAAATCGACTGCGAGGTAGCACCAGAGTTTTGCActgttaaaga
aaaaaaagga
Run BLAST on NCBI

transcript from alignment at scaffold_213:711522..713273+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052261 ID=TCONS_00052261|Name=TCONS_00052261|organism=Clytia hemisphaerica|type=transcript|length=1752bp|location=Sequence derived from alignment at scaffold_213:711522..713273+ (Clytia hemisphaerica)
CGATTCTTCTTCGATGTTGTAATAAAAAAGGGTTTGACCACCTTCTAATT
GTCTGTCAGCGAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTA
TCttgaattttggctttgacGTTGTCGATAGTATCATTTGGTTCGACTTC
TAAAGTAATAGTTTTACCAGATGAGGTTTTGACAAAGATTGTCATTGACC
GAATGGGAACGGAACGCAAGACCAATCGAAGGGTAGATTCTTTTTGGATG
TTGTAGTCGGAAAGGGTTCGGCCATCCTCTAATTGTCTGCCAGAGAAGAT
CAAACGTTGTTGATCTGGAGGGATTCCTTCTTTATCTTGAATTTTGGTTT
TGACGTTGTCGATAGTATCATTTGGTTCGACTTCTAAAGTAATGGTTTTA
CCAGATATAGATAAGGTTTTGACAAAGATTGTCATTGACCGAATGGGAAC
GGAACGCAAGAGCAAGTGAAGGGTTGATTCTTTTTGAATGTTGTGGTCGG
AAAGGGTTCGGCCATCCTCTAATTTTCTGCCAGAGAAGATCAAACGTTGT
TGATCTGGAGGGATTCCTTCTTTATCttgaattttggctttgacGTTGTC
GATAGTATCATTTGGTTCGACTTCTAAAGTAATGGTTTTACCAGATAAGG
TTTTGACAAAGATTGTCATTGACCGAATGGGAACGGAAGGCAATAGCAAG
TGAAGGGGTGATTCTTTTTGGATGTTGTAGTCGGAAAGGGTTCGGCCATC
CTCTAATTTTCTGCCAGAGAAGATCAAACGTTGTTGATCTGGAGGGATTC
cttctttattttgaattttggctttgacGTTGTCGATAGTATCATTTGGT
TCGACTTCTAAAGTAATGGTTTTACCAGATAAGGTTTTGACAAAGATTGT
CATTGACCAAATGCGAACGGAAGGTAAGACCAAGTGAAGGGTTGATTCTT
TTTGGATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCTAATTTTCTGCCA
GAGAAGATCAAACGTTGTTGATCTGGAGGGATTCCTTCTTTATCTTGAAT
TTTGGCTTTGAAGTTGTTGATAGTATCATTTGGTTCGACTTTTAAAGTAA
TGGTTTTACCAGATAAAGTTTTGACAAAGATTGTCAGTGACCGAATGGGA
ACGGAAGGCAAGACCAAGTTAAGGGTGGATTCCTTTTGGATGTTGTAGTC
GGAAAGGGTTCGGCCATCCTCTAATTCTTTGCCAGCGAAGATCAAACGTT
GTTGATCTGGTGGGATTCCTTCTTTATCttgaattttggctttgacGTTG
TCGATAGTATCATTTGGTTCGACTTCCAAAGTGATGgctttcattttgaa
tttgacgAAGATTGAAAAAGATCGTTTTCGCAAAACTAAACGAAAATTCG
ATTCAATTAGTATTTGTTCTAACAATATATCTTTGTATTTTAACTCCTTG
TCTTGGTAGGTCAAATAGTACTGAGCCGAGGAAAGTCCAAGGTCTTCCTC
TATTATCTCTAGAGGTATTTTACTTGAGCTTACGACAAAAGATGAGTGCT
TTCCATCAAAGGTTCATCTTGAGGCTGAATTACACAATCAGATGAACAGG
TGGCACCATTCAAGCTCGAAGCCGTAAGTTGCTGCGTAGCTGGTTTTGAA
TTataacttattttttttagatttggtGCCAAGGCTTGCTTTGAACTGGA
AATCGACTGCGAGGTAGCACCAGAGTTTTGCActgttaaagaaaaaaaag
ga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033072XLOC_033072Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052261-exon-scaffold_213-1491911889:711522..711696TCONS_00052261-exon-scaffold_213-1491911889:711522..711696Clytia hemisphaericaexon
TCONS_00052261-exon-scaffold_213-1510915933:711522..711696TCONS_00052261-exon-scaffold_213-1510915933:711522..711696Clytia hemisphaericaexon
TCONS_00052261-exon-scaffold_213-1575043694:711522..711696TCONS_00052261-exon-scaffold_213-1575043694:711522..711696Clytia hemisphaericaexon
TCONS_00052261-exon-scaffold_213-1491911889:712171..712210TCONS_00052261-exon-scaffold_213-1491911889:712171..712210Clytia hemisphaericaexon
TCONS_00052261-exon-scaffold_213-1510915933:712171..712210TCONS_00052261-exon-scaffold_213-1510915933:712171..712210Clytia hemisphaericaexon
TCONS_00052261-exon-scaffold_213-1575043694:712171..712210TCONS_00052261-exon-scaffold_213-1575043694:712171..712210Clytia hemisphaericaexon
TCONS_00052261-exon-scaffold_213-1491911889:712679..713273TCONS_00052261-exon-scaffold_213-1491911889:712679..713273Clytia hemisphaericaexon
TCONS_00052261-exon-scaffold_213-1510915933:712679..713273TCONS_00052261-exon-scaffold_213-1510915933:712679..713273Clytia hemisphaericaexon
TCONS_00052261-exon-scaffold_213-1575043694:712679..713273TCONS_00052261-exon-scaffold_213-1575043694:712679..713273Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:711522..713273 +
Expression
No biomaterial libraries express this feature.
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019956Ubiquitin
IPR000626Ubiquitin_dom
IPR019954Ubiquitin_CS
IPR029071Ubiquitin-rel_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00052261 vs. Swiss-Prot (Human)
Match: UBB (Polyubiquitin-B OS=Homo sapiens GN=UBB PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.802e-71
Identity = 128/191 (67.02%), Postives = 147/191 (76.96%), Query Frame = -1 
Query:    1 IEEDLGLSSAQYYLTYQDKELKYKDILLE-QILIESNFRLVLRKRS-FSIFVK-FKMKAITLEVEPNDTIDNVKAKIQDKEGIPPDQQRLIFAGKELEDGRTLSDYNIQKESTLNLVLPSVPIR-SMTIFVKTSSGKTITLEVEPNDTIDNVKAKIQDKEGIPPDQQRLIFADRQLEGGQTLFYYNIEEES 561
            I++  G+   Q  L +  K+L+    L +  I  ES   LVLR R    IFVK    K ITLEVEP+DTI+NVKAKIQDKEGIPPDQQRLIFAGK+LEDGRTLSDYNIQKESTL+LVL    +R  M IFVKT +GKTITLEVEP+DTI+NVKAKIQDKEGIPPDQQRLIFA +QLE G+TL  YNI++ES
Sbjct:   30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL---RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 217

HSP 2 Score: 212.616 bits (540), Expect = 1.790e-67
Identity = 113/144 (78.47%), Postives = 125/144 (86.81%), Query Frame = -1 
Query:    1 FSIFVK-FKMKAITLEVEPNDTIDNVKAKIQDKEGIPPDQQRLIFAGKELEDGRTLSDYNIQKESTLNLVLPSVPIR-SMTIFVKTSSGKTITLEVEPNDTIDNVKAKIQDKEGIPPDQQRLIFADRQLEGGQTLFYYNIEEES 426
              IFVK    K ITLEVEP+DTI+NVKAKIQDKEGIPPDQQRLIFAGK+LEDGRTLSDYNIQKESTL+LVL    +R  M IFVKT +GKTITLEVEP+DTI+NVKAKIQDKEGIPPDQQRLIFA +QLE G+TL  YNI++ES
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL---RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 141

HSP 3 Score: 128.257 bits (321), Expect = 4.288e-35
Identity = 75/118 (63.56%), Postives = 86/118 (72.88%), Query Frame = -1 
Query:  217 IEEDLGLSSAQYYLTYQDKELKYKDILLE-QILIESNFRLVLRKRS-FSIFVK-FKMKAITLEVEPNDTIDNVKAKIQDKEGIPPDQQRLIFAGKELEDGRTLSDYNIQKESTLNLVL 561
            I++  G+   Q  L +  K+L+    L +  I  ES   LVLR R    IFVK    K ITLEVEP+DTI+NVKAKIQDKEGIPPDQQRLIFAGK+LEDGRTLSDYNIQKESTL+LVL
Sbjct:  106 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 223
The following BLAST results are available for this feature:
BLAST of TCONS_00052261 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBB3.802e-7167.02Polyubiquitin-B OS=Homo sapiens GN=UBB PE=1 SV=1[more]
back to top