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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052147 ID=TCONS_00052147|Name=TCONS_00052147|organism=Clytia hemisphaerica|type=transcript|length=7640bpRun BLAST on NCBI protein sequence of voltage-gated sodium channel Nav2.5 >TCONS_00052147-protein ID=TCONS_00052147-protein|Name=voltage-gated sodium channel Nav2.5|organism=Clytia hemisphaerica|type=polypeptide|length=1161bp MGQLLSTIAGSMGALGNVTVILGLIIYIFSVMGMQIFGSLYDKTKYKPCDRun BLAST on NCBI transcript from alignment at scaffold_211:61151..85603+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052147 ID=TCONS_00052147|Name=TCONS_00052147|organism=Clytia hemisphaerica|type=transcript|length=24453bp|location=Sequence derived from alignment at scaffold_211:61151..85603+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_211:61151..85603+ >TCONS_00052147 ID=TCONS_00052147|Name=TCONS_00052147|organism=Clytia hemisphaerica|type=CDS|length=38346bp|location=Sequence derived from alignment at scaffold_211:61151..85603+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00052147 vs. Swiss-Prot (Human)
Match: SCN8A (Sodium channel protein type 8 subunit alpha OS=Homo sapiens GN=SCN8A PE=1 SV=1) HSP 1 Score: 679.093 bits (1751), Expect = 0.000e+0 Identity = 441/1109 (39.77%), Postives = 643/1109 (57.98%), Query Frame = 3
Query: 2730 KSWKTMGQLLSTIAGSMGALGNVTVILGLIIYIFSVMGMQIFGSLYDKTKYKPCDPDGEEFPRYNFENFGNSFMMIFRILCGKWIEPQWDLLDLTNIASIFFIF-LVFVIGRWVVXXXXXXXXXXXXXXXXETSDEEDEEP-----KMTRIQXXXXXXXXXXXXXXXANFNDMDENDEKKDLGDGENGNLDTKNLADGNIPDMHVEIYGKDGMLMVDSNGNEPKMTEVNSDIDNNLKPILNNHDSDISKLQNGTTISNGDVSRRRL----------SGSVDIEIPVSVAP-------TEGFSNGGLDNGMGKKENSLSSVKIEIQREKTYIDDXXXXXXXXXXXXNTSYLESPLRRF--------------WHNSRHNMKMLIEHKYFEAVILFLIAFSSLTLVFEDVYLNEKEGLKDFLFYCNYFFAIIFTLEFLVKLFALGFVTYFTNFWNLLDVFIVAISLSSLFGDS-----GGNLKALRSLRGLRPLRAISRFEGMKVVVNALVYSIPSIGNVLLVCVAFWLIFSIMGYNLFGGKFSRCLDENFK-QLNISWVNNKTQCFDRIREGYN--YTWKNRNINFDDAASGFLALFQTATLEGWFEAMADAYDARNIDEQPGYRVSYFNQMYFVVFILLGAFFILNLFIGVIIDNFNRLKQQYEDGADGVSFFLTPGQRNWINTLKAASLKKPSRRLTRPKSKWRGTLFDFIQTKYFEFFIMSVILLNMLSMMIQHYNQPREVDLALDYLNYVFTGIFTIEAILRLTAMRLEYFKYGMNXXXXXXXXXXXXXXXMDAYNQNFIISPXXXXXXXXXXXXXXXXXXEGAKGIRKLLFTIVKSAPALSNIGTLLFLITFIYAIMGMNLFGTIAENGAITQTTNFKTFGASMCVLFRISTAAGWNAVLEGAMVQPPSCD-------PNMQGNCGNKLIAIIFFVTYIMVIVLIIINMYIAVILENFNQAQSQDEAGITEDDLEAYYATWEEFDPKATQFIKYSQLSDFIDALDGPLKVPKPNYWFLEQTDIPIKERYRCHCLDIMTALIKRALGDESCEESEDLSIILKKVEDRYKKLFPLRTKENDVETTRERLKTENAAAKSIQRVFRRHL 5900
KSW T+ L+ I S+GALGN+T++L +I++IF+V+GMQ+FG Y + K + D E PR++ +F +SF+++FR+LCG+WIE WD +++ A +F +V VIG VVLNLFLALLLSSF+ N + ++D E + RI+K + W+K +A+F E DE K L E+Y K + + G +DI N D K NGTT G + + + ++ + +P++V TE S+ G K + SS + K +++ + + E ++RF W R +++EH +FE I+F+I SS L FED+Y+ +++ ++ L Y + F IF LE L+K A GFV +FTN W LD IVA+SL SL ++ G +K+LR+LR LRPLRA+SRFEGM+VVVNALV +IPSI NVLLVC+ FWLIFSIMG NLF GK+ C +E + + I VNNKT+C +++ EG N WKN INFD+ +G+LAL Q AT +GW + M A D+R DEQP Y + + +YFV+FI+ G+FF LNLFIGVIIDNFN+ K+++ G F+T Q+ + N +K KKP + + RP +K +G +FDF+ + F+ IM +I LNM++MM++ Q ++++ L ++N VF FT E +L++ A+R YF G N+FDF++V+ SI + + + + +SP LFRV+R+ R+GR+LR +GAKGIR LLF ++ S PAL NIG LLFL+ FI++I GM+ F + I NF+TFG SM LF+I+T+AGW+ +L + +PP C +G+CGN + I FFV+YI++ LI++NMYIA+ILENF+ A + ++EDD E +Y WE+FDP ATQFI+Y +L+DF DAL+ PL+VPKPN L D+P+ R HCLDI+ A KR LGD S +L I+ +++E+R+ P + + TT R K E +A +QR +R HL
Sbjct: 856 KSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCK-INQDC-ELPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQAMCLIVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDGEMNNLQISVIRIKKGVAWTKLKVHAFMQAHFKQ-READEVKPLD----------------------ELYEKKANCIANHTG---------ADIHRN---------GDFQKNGNGTTSGIGSSVEKYIIDEDHMSFINNPNLTVRVPIAVGESDFENLNTEDVSSESDPEGSKDKLDDTSSSEGSTIDIKPEVEEVPVEQPEEYLDPDACFTEGCVQRFKCCQVNIEEGLGKSWWILRKTCFLIVEHNWFETFIIFMILLSSGALAFEDIYIEQRKTIRTILEYADKVFTYIFILEMLLKWTAYGFVKFFTNAWCWLDFLIVAVSLVSLIANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYHYCFNETSEIRFEIEDVNNKTEC-EKLMEGNNTEIRWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRKPDEQPKYEDNIYMYIYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKF----GGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPLNKIQGIVFDFVTQQAFDIVIMMLICLNMVTMMVETDTQSKQMENILYWINLVFVIFFTCECVLKMFALRHYYFTIGWNIFDFVVVILSIVGMFLADIIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIFSIFGMSNFAYVKHEAGIDDMFNFETFGNSMICLFQITTSAGWDGLLLPILNRPPDCSLDKEHPGSGFKGDCGNPSVGIFFFVSYIIISFLIVVNMYIAIILENFSVATEESADPLSEDDFETFYEIWEKFDPDATQFIEYCKLADFADALEHPLRVPKPNTIELIAMDLPMVSGDRIHCLDILFAFTKRVLGD-----SGELDILRQQMEERFVASNPSKVSYEPITTTLRR-KQEEVSAVVLQRAYRGHL 1910 HSP 2 Score: 134.42 bits (337), Expect = 6.092e-31 Identity = 80/181 (44.20%), Postives = 116/181 (64.09%), Query Frame = 2
Query: 1400 GLKAMVNTLLKSMKMMTDVIILTLFFISIFALIGLQLFPGQLRSRCVKGRGNL--SIFE--------DDYYKKKENWAFKQNTEEEIICGNASTAWNCPDNYTCIPGIGENPGRGYVSYDSFPQAFLTSLQVCTLDYWEIVFNSVISAMGEWYMIYFLLAVFLGPFYXXXXXXXXXXXXYE 1912
GLK +V L++S+K ++DV+ILT+F +S+FALIGLQLF G LR++CV N S E ++Y K N+ E ++CGN+S A CP+ Y C+ G NP GY S+D+F AFL ++ T DYWE ++ + A G+ YMI+F+L +F+G FYL+NL+LAVV+ +YE
Sbjct: 236 GLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCVVWPINFNESYLENGTKGFDWEEYINNKTNFYTVPGMLEPLLCGNSSDAGQCPEGYQCMKA-GRNPNYGYTSFDTFSWAFLALFRLMTQDYWENLYQLTLRAAGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYE 415 HSP 3 Score: 124.405 bits (311), Expect = 5.657e-28 Identity = 69/165 (41.82%), Postives = 105/165 (63.64%), Query Frame = 2
Query: 2231 CIAINTAFMASEHYDMDTTYKYFLEICNYVFTTMFAIEMVMKILGYTLKGYLKNKWNMFDGXXXXXXXXXXXXXXXGLVDGNVLSFLKVFRLMRVMKLAKSWKTMGQLLSTIAGSMGALGNVTVILGLIIYIFSVMGMQIFGSLYDKTKYKPCDPDGE-EFPRYN 2722
CI +NT FMA EH+ M +++ L + N VFT +F EM +K++ Y + WN+FDG +V +S++++ L D LS L+ FRL+RV KLAKSW T+ L+ I S+GALGN+T++L +I++IF+V+GMQ+FG Y K C + + E PR++
Sbjct: 762 CIVLNTLFMAMEHHPMTPQFEHVLAVGNLVFTGIFTAEMFLKLIAMDPYYYFQEGWNIFDGFIVSLSLMEL-----SLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSY---KECVCKINQDCELPRWH 918 HSP 4 Score: 115.931 bits (289), Expect = 2.150e-25 Identity = 65/178 (36.52%), Postives = 103/178 (57.87%), Query Frame = 1
Query: 919 DGDYYPDDETISDGYRSD-ESEEELD-EYINVPNCMLGQPLKDFDS--GQENTFVVVNKKFGKQVVYRFCKEKSLWLFGTQNPLRKVNIYIFTHQYFEIFILLTIAVNCVFMALSDPPEL---MEFIFAAIYTLEMIIKILAKGFVMHKYSYLRNSWNWLDFVVVVLGFKSDGEYITE 1431
DG + DDE SD E+ + L Y ++P ++ PL+DFD + TFVV+N+ + ++RF +L++ N +R++ I I H F + I+ TI NCVFM S+PP+ +E+ F IYT E ++KI+A+GF + +++LR+ WNWLDF V+++ YITE
Sbjct: 41 DGSHREDDEDSKPKPNSDLEAGKSLPFIYGDIPQGLVAVPLEDFDPYYLTQKTFVVLNRG---KTLFRFSATPALYILSPFNLIRRIAIKILIHSVFSMIIMCTILTNCVFMTFSNPPDWSKNVEYTFTGIYTFESLVKIIARGFCIDGFTFLRDPWNWLDFSVIMMA------YITE 209 HSP 5 Score: 89.3521 bits (220), Expect = 2.763e-17 Identity = 86/327 (26.30%), Postives = 146/327 (44.65%), Query Frame = 3
Query: 3744 RHNMKMLIEHKYFEAVILFLIAFSSLTLVFEDVYLNEKEGLKDFLFYCNYFFAIIFTLEFLVKLFALGFV----TYFTNFWNLLDVFIVAISLSSLFGDSGGNLKALRSLRGLRPLRAISRFEGMKVVVNALVYSIPSIGNVLLVCVAFWLIFSIMGYNLFGGKF-SRCL--DENFKQLNISWVNNKTQCFD------------------------------RIREGYNYTWKNRNIN-----FDDAASGFLALFQTATLEGWFEAMADAYDARNIDEQPGYRVSYFNQMYFVVFILLGAFFILNLFIGVIIDNFNRLKQQYEDGAD 4598
R +K+LI H F +I+ I + + + F + D+ Y F I+T E LVK+ A GF T+ + WN LD ++ ++ + F + G N+ ALR+ R LR L+ IS G+K +V AL+ S+ + +V+++ V +F+++G LF G ++C+ NF N S++ N T+ FD + EGY RN N FD + FLALF+ T + W N+ + ++FV+ I +G+F+++NL + V+ + Q + A+
Sbjct: 123 RIAIKILI-HSVFSMIIMCTILTNCVFMTFSNP--------PDWSKNVEYTFTGIYTFESLVKIIARGFCIDGFTFLRDPWNWLDFSVIMMAYITEFVNLG-NVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCVVWPINF---NESYLENGTKGFDWEEYINNKTNFYTVPGMLEPLLCGNSSDAGQCPEGYQCMKAGRNPNYGYTSFDTFSWAFLALFRLMTQDYW----------ENLYQLTLRAAGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYEEQNQATLEEAE 426 The following BLAST results are available for this feature:
BLAST of TCONS_00052147 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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