TCONS_00051992 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051992
Unique NameTCONS_00051992
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length796

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051992 ID=TCONS_00051992|Name=TCONS_00051992|organism=Clytia hemisphaerica|type=transcript|length=796bp
TAATTGAGGTTGTTTGAAGATATTCAAAAGATGGCATCAAAATGGGGTGG
TGGCAAGCAGAAAATAAAAGACAGAGACCTGGAtgctgaatttgaaaagt
ttttgaatgaGTCATTGTCTGATGAATCCTTAGCTTCACCAAGGCGCTCT
TTAACATCGAtgacaacaaaacaaaaagctaAAGGAGCGTTACCCTCGCC
TAATGAACAACAGAAGTTCGATAAGCCATGGTGGGCGACAAGTGAAGATG
ATGTAACAGCCTCtgaaaatgcaaacaaaaagaaatgGATCAAAAGCAAA
GAAGATACTATAGATGAGGTAGATGGTATAGATGCTCCAACAAAACAGAC
CAATAACCCTCTTGCAATGAGCAGAGACAGTTTGGATGTGAATAGCAGTC
GTCCAGGAACAGCTCTCGATACAATTCTCAGTGAATCTGAGCCAAGAACC
AGTGAAAACAGAAACTGATCAAGAACCAGATGGTGTTGATGCTGGGGGAA
CACAGTATGAAGAAGATTTTACAGGTAGTACAAACTCCCAATCCAGTGTA
TCTGGGAACACTGTCAACCCTTCCTCGACAACTCATAACCAAGAAATGGG
TATGGAAACACTTGAAGAAATGAAGGATAAAGATTTGTTCTTCTCacaac
ttgaaaaagaaaaacaagatgATATTGATTATGGAGAATTGAACCGCAAA
TTTGACGAAGAAGAGTCAATGACAAACGAAGGTATGAGTGTCCTTGGTTT
ACAACCTTACAGACCTCCTCATTATGATGACAGTGGGAGTGGAAGT
Run BLAST on NCBI

transcript from alignment at scaffold_208:71837..74743-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051992 ID=TCONS_00051992|Name=TCONS_00051992|organism=Clytia hemisphaerica|type=transcript|length=2907bp|location=Sequence derived from alignment at scaffold_208:71837..74743- (Clytia hemisphaerica)
TAATTGAGGTTGTTTGAAGATATTCAAAAGATGGCATCAAAATGGGGTGG
TGGCAAGCAGAAAATAAAAGACAGAGACCTGGATGCTGAATTTGAAAAGT
TTTTGAATGAGGTACGTATTGTCTTCATTTTTTCGACAAGATAATGGAGC
AGAATAATAATTGATTTCATTGATTCTCACCAACAAAAAACTTTTGCTTT
CAGTGTTGAATCTTTTCTGTCTGTGAACGGAAATCTGTCCAGTTGATATT
TTTCACTTACATTATATTGTAAGCCTTGGAAAAAAAAATTGTAAATGTTT
CGCCTAGTTTTGACCTTTCTGTCTGTATTTACCAAAGGTGCTTACCAACT
TTGCTCTACATTTTAGTCATTGTCTGATGAATCCTTAGCTTCACCAAGGC
GCTCTTTAACATCGATGACAACAAAACAAAAAGCTAAAGGAGCGTTACCC
TCGCCTAATGAACAACAGAAGTTCGATAAGCCATGGTGGGCGACAAGTGA
AGATGATGTAACAGCCTCTGAAAATGCAAACAAAAAGAAATGGATCAAAA
GCAAAGAAGATACTATAGTGAGTAACTTTGAAAGATAAGATGGTGCTTTA
ATTGCTGGTGAAAGTTAATGATACAAGAGATATATGACAATTGACCTTTC
TTCATTTTTACATAAGTGTTCCCGTTTCATATCAGACACATATTTCACAT
CAGGACAGTGTCTGATAGTGTATTGTTATATTATGTTGATATAGGCAAAA
AAATGTTTTTTTCCCTCTTTCTGACAAAATCTTGCTCCACATCCATGTCA
ATCCAATGTGAAAAAGCTTGTGAATTAAAATTGATGAGTAAGCAAACGAA
ATCGCTTTTATTTAGAAACAAAACCTTTAATGTGTGTTTACCAAAACTAA
CTTGTTATCTTTTTCAGGATGAGGTAGATGGTATAGATGCTCCAACAAAA
CAGACCAATAACCCTCTTGCAATGAGCAGAGACAGTTTGGATGGTAATTC
ACTTTTCATCTACTCTATCATTGTATTTGACAAGTTTTCCTGATAGCCTG
TTTCCTGTGGACAACAAGTTGATCCTTTACTAACAACAACCTTTCGAATA
TTTTGTATTAGAGAGATGTCAATTTGAATTGAACTTAAAAATGTAATTCT
GTGTTTGTTTTTAGTGAATAGCAGTCGTCCAGGAACAGCTCTCGATACAA
TTCTCAGTGAATCTGAGCCAAGGTATGATTTCTGTTGACTGAATTATTTT
TAAGGATACAAGTCTATAGAGAACTTACTGCTGTATATTGTGTCTACTTT
ACATTTTCTCATGTAGACCTCGATTAACTTCATGTTATTTTAAAGATATA
TTTTTTTTATGAAATAGAAAGTTGAAGTGCCTTTATGCTGACGAAGCAGA
AAAAAAAGAGAATTGCCCAAAATTTGTGCTCGCGAGTCTGAATGGGGAGA
AAGTGGTCCTTATATTAATGCTATTTCAGCAAATTATAGGAGATACATAA
AATAATGTATATATGTTTAAATAACTTTTTTCTTCAGTTATTCAGAACCA
GTGAAAACAGAAACTGATCAAGAACCAGATGGTGTTGATGCTGGGGGAAC
ACAGTATGAAGAAGATTTTACAGGTTGGTTTTGTTTATTTTAATTTGTTT
TATTTATCCTTTAGTTTTTGTGATCCCTTCTGATCCCTTTGCTTTTTCTT
TACATATCTTTTGAGTCGTATTTGATCCTTTATAACTACTCTGTATAATT
CTAGATTGTGGTAATCCATTAACAAAGACAACTTATCCCTCTCCATTTAT
TTTCTTTCCACTATTATATCTTTTTTCTATGCTTTGTTTTTCTCTATCTG
CTTTTTGCCTTTCCTCTTTTTTGACAAAATCAACGTCAAAACAATCGAAA
ACAATTGAGTGGTTATTAAAAAGATTAAAACATTCTTTATATCTTATTAA
CTCTCTCTTAATAATTTAATCTCTTGATAACTTATATTATTGATCATTGT
CTGAATAATCTCCCAAGCTGTTAGACAAGGTACGGTGTTCATATTAGAAA
TAGCAAATACTTCACCATTAGCAATGATGGACATTTCCTTTCATGACTTT
CAGGTAGTACAAACTCCCAATCCAGTGTATCTGGGAACACTGTCAACCCT
TCCTCGACAACTCATAACCAAGAAATGGGTATGGAAACACTTGAAGAAAT
GAAGGATAAAGATTTGTTCTTCTCACAACTTGAAAAAGAAAAACAAGATG
ATATTGATTATGGAGAATTGAACCGCAAATTTGACGAAGAAGAGTCAATG
TAATTATTCACACTTTGTTGTTTTAACTCGATTCTATTTTTCCATAAAGA
TGAGTAAAGGTAACGCGTACACTTGGAGTTGAACAACCAGAAACCTTGAA
TGGTGAAATTTCTTGACACAACTCCGATGTGATCGAGTCTTCTGATTGGT
AAGAGAATTTTAACTGAGCTCAAAGAATCTGCCTGCTTTATATCCTGTTC
CATAAATTTCCATACAGGGGGGAGGGTAGACGAACCTTTTCAAATGAAAA
ACAAATTACTTAAAAAAGTGTAGATACCCCCTGGAAAATGGCAAAATTTG
CAAAAGAACCCTTGGAAAAAATTATTTTTGTGTCTTAAAGTGAGGGTGAA
TGAACTAAAATCAGTTGTTCACCCCCTGGAAATTCTAGAATAACTTTTTA
CCCCCTGGAAAAATGAAAAAATACTTCTTTAGACCCCCTGGAAATGTTCA
TCCACCCCCTGTATGGTCATAAAATGGAATTTTTCACTAATGTCCTATTA
CTTTTCACCATTATCTTTGATTATCTTTAAGGACAAACGAAGGTATGAGT
GTCCTTGGTTTACAACCTTACAGACCTCCTCATTATGATGACAGTGGGAG
TGGAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032910XLOC_032910Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051992-exon-scaffold_208-1575043694:74633..74743TCONS_00051992-exon-scaffold_208-1575043694:74633..74743Clytia hemisphaericaexon
TCONS_00051992-exon-scaffold_208-1575043694:74177..74377TCONS_00051992-exon-scaffold_208-1575043694:74177..74377Clytia hemisphaericaexon
TCONS_00051992-exon-scaffold_208-1575043694:73751..73826TCONS_00051992-exon-scaffold_208-1575043694:73751..73826Clytia hemisphaericaexon
TCONS_00051992-exon-scaffold_208-1575043694:73522..73579TCONS_00051992-exon-scaffold_208-1575043694:73522..73579Clytia hemisphaericaexon
TCONS_00051992-exon-scaffold_208-1575043694:73121..73198TCONS_00051992-exon-scaffold_208-1575043694:73121..73198Clytia hemisphaericaexon
TCONS_00051992-exon-scaffold_208-1575043694:72445..72640TCONS_00051992-exon-scaffold_208-1575043694:72445..72640Clytia hemisphaericaexon
TCONS_00051992-exon-scaffold_208-1575043694:71837..71912TCONS_00051992-exon-scaffold_208-1575043694:71837..71912Clytia hemisphaericaexon
TCONS_00051992-exon-scaffold_208-1510915933:74633..74743TCONS_00051992-exon-scaffold_208-1510915933:74633..74743Clytia hemisphaericaexon
TCONS_00051992-exon-scaffold_208-1510915933:74177..74377TCONS_00051992-exon-scaffold_208-1510915933:74177..74377Clytia hemisphaericaexon
TCONS_00051992-exon-scaffold_208-1510915933:73751..73826TCONS_00051992-exon-scaffold_208-1510915933:73751..73826Clytia hemisphaericaexon
TCONS_00051992-exon-scaffold_208-1510915933:73522..73579TCONS_00051992-exon-scaffold_208-1510915933:73522..73579Clytia hemisphaericaexon
TCONS_00051992-exon-scaffold_208-1510915933:73121..73198TCONS_00051992-exon-scaffold_208-1510915933:73121..73198Clytia hemisphaericaexon
TCONS_00051992-exon-scaffold_208-1510915933:72445..72640TCONS_00051992-exon-scaffold_208-1510915933:72445..72640Clytia hemisphaericaexon
TCONS_00051992-exon-scaffold_208-1510915933:71837..71912TCONS_00051992-exon-scaffold_208-1510915933:71837..71912Clytia hemisphaericaexon
TCONS_00051992-exon-scaffold_208-1491911889:74633..74743TCONS_00051992-exon-scaffold_208-1491911889:74633..74743Clytia hemisphaericaexon
TCONS_00051992-exon-scaffold_208-1491911889:74177..74377TCONS_00051992-exon-scaffold_208-1491911889:74177..74377Clytia hemisphaericaexon
TCONS_00051992-exon-scaffold_208-1491911889:73751..73826TCONS_00051992-exon-scaffold_208-1491911889:73751..73826Clytia hemisphaericaexon
TCONS_00051992-exon-scaffold_208-1491911889:73522..73579TCONS_00051992-exon-scaffold_208-1491911889:73522..73579Clytia hemisphaericaexon
TCONS_00051992-exon-scaffold_208-1491911889:73121..73198TCONS_00051992-exon-scaffold_208-1491911889:73121..73198Clytia hemisphaericaexon
TCONS_00051992-exon-scaffold_208-1491911889:72445..72640TCONS_00051992-exon-scaffold_208-1491911889:72445..72640Clytia hemisphaericaexon
TCONS_00051992-exon-scaffold_208-1491911889:71837..71912TCONS_00051992-exon-scaffold_208-1491911889:71837..71912Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_208supercontigscaffold_208:71837..74743 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.107117	0.0167315	0	0	1.72306	0.0462478	1.79133	0.592692	0.231624	0	0.0512014	0	0	0	0.0839203	0.00801806	0.0659378	0.197561	0	1.84647e-06	0	0.101495	0	0.084219	0	0.011544	0	0.0124486	0.126586
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051992 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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