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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051985 ID=TCONS_00051985|Name=TCONS_00051985|organism=Clytia hemisphaerica|type=transcript|length=810bp
CTGAACAAGTTCTCATCTCAAGTCCAGATACAGATGTATTTGTAATTTGT
CTTGGGATGCAACATATGATTAATGCCAATGTATTTTTCCTCACCGGAGT
GAAGAATTCCAGAAGAATTATTGACATCACAGCCGTTGCAGAAAATGTAA
ATGCGTCATTGAACCAATGCGAAGCTTCCAAAGATTTGATCCTGGAGTCA
TTGATCGGCCTCCATAGCTTCACTGGTTGTGACACCATTAGTGCTTTCGC
TGGGAAGGGGAAAGTCAAACCATTGAATTTGATGATGAAGGATATACGCT
ACGTGGAAGCTTTTTCTCAGCTGGGGAAGACTATCAATATAGATAACAAG
ATTAAAGATCAGTTGAAGCAATTTGTTTGTCACTTATACGGTTGGAGACA
AACCAAGTCACTGCAAGACGTTAGATACAAGATGTATTGCCAGAGTGGAG
GGAAATTGTCCTGCGAAAAACTGCCACCGTGTGACGATGTCCTCGAGCTA
CACATCATCAGAGCCAACTACCAAGCTTTCATTTGGCGACAAAGCTTGGT
CACACAGCAGCAACAAGACGTTCCAACAGAAAATGGTTGGCTTTTGAATG
AAGATGGGTCTTACGATATTGAGTGGATGAGATGCAACCCTGCACCCGAT
GAGATCCTTGAGCTGGTATCTTGTGACTGTAAGAAGAAATGTGACGAAAA
CAGTTGTTCATGTGCAGTCAATAACTTGAAGTGTACAGATATTTGCTCTT
GTAATGATTGTGGCAATATTGAAGCGATAGAAGTTGATGAGGAAATGATG
GATGAATACG Run BLAST on NCBI protein sequence of TCONS_00051985-protein >TCONS_00051985-protein ID=TCONS_00051985-protein|Name=TCONS_00051985-protein|organism=Clytia hemisphaerica|type=polypeptide|length=269bp
EQVLISSPDTDVFVICLGMQHMINANVFFLTGVKNSRRIIDITAVAENVN
ASLNQCEASKDLILESLIGLHSFTGCDTISAFAGKGKVKPLNLMMKDIRY
VEAFSQLGKTINIDNKIKDQLKQFVCHLYGWRQTKSLQDVRYKMYCQSGG
KLSCEKLPPCDDVLELHIIRANYQAFIWRQSLVTQQQQDVPTENGWLLNE
DGSYDIEWMRCNPAPDEILELVSCDCKKKCDENSCSCAVNNLKCTDICSC
NDCGNIEAIEVDEEMMDEY Run BLAST on NCBI transcript from alignment at scaffold_208:306790..307736+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051985 ID=TCONS_00051985|Name=TCONS_00051985|organism=Clytia hemisphaerica|type=transcript|length=947bp|location=Sequence derived from alignment at scaffold_208:306790..307736+ (Clytia hemisphaerica)
CTGAACAAGTTCTCATCTCAAGTCCAGATACAGATGTATTTGTAATTTGT
CTTGGGATGCAACATATGATTAATGCCAATGTATTTTTCCTCACCGGAGT
GAAGAATTCCAGAAGAATTATTGACATCACAGCCGTTGCAGAAAATGTAA
ATGCGTCATTGAACCAATGCGAAGCTTCCAAAGATTTGATCCTGGAGTCA
TTGATCGGCCTCCATAGCTTCACTGGTTGTGACACCATTAGTGCTTTCGC
TGGGAAGGGGAAAGTCAAACCATTGAATTTGATGATGAAGGATATACGCT
ACGTGGAAGCTTTTTCTCAGCTGGGGAAGACTATCAATATAGATAACAAG
ATTAAAGATCAGTTGAAGCAATTTGTTTGTCACTTATACGGTTGGAGACA
AACCAAGTCACTGCAAGACGTTAGATACAAGATGTATTGCCAGAGTGGAG
GGAAATTGTCCTGCGAAAAACTGCCACCGTGTGACGATGTCCTCGAGCTA
CACATCATCAGAGCCAACTACCAAGCTTTCATTTGGCGACAAAGCTTGGT
CACACAGCAGCAACAAGACGTTCCAACAGAAAATGGTTGGCTTTTGAATG
AAGATGGGTCTTACGATATTGAGTGGATGAGATGCAACCCTGCACCCGAT
GAGGTAATTGTCATTACTATCTTTGATATGAAAAGGTATCTGAGAAAAGT
TACATTTATATCATCTTAGAGTCTACTATTCTATCTTTCTATGTTGTTAA
CTCATCTGACACGTTCCCACAAATTTTTATACCATTTTAGATCCTTGAGC
TGGTATCTTGTGACTGTAAGAAGAAATGTGACGAAAACAGTTGTTCATGT
GCAGTCAATAACTTGAAGTGTACAGATATTTGCTCTTGTAATGATTGTGG
CAATATTGAAGCGATAGAAGTTGATGAGGAAATGATGGATGAATACG Coding sequence (CDS) from alignment at scaffold_208:306790..307736+ >TCONS_00051985 ID=TCONS_00051985|Name=TCONS_00051985|organism=Clytia hemisphaerica|type=CDS|length=1614bp|location=Sequence derived from alignment at scaffold_208:306790..307736+ (Clytia hemisphaerica)
GAACAAGTTCTCATCTCAAGTCCAGATACAGATGTATTTGTAATTTGTCT
TGGGATGCAACATATGATTAATGCCAATGTATTTTTCCTCACCGGAGTGA
AGAATTCCAGAAGAATTATTGACATCACAGCCGTTGCAGAAAATGTAAAT
GCGTCATTGAACCAATGCGAAGCTTCCAAAGATTTGATCCTGGAGTCATT
GATCGGCCTCCATAGCTTCACTGGTTGTGACACCATTAGTGCTTTCGCTG
GGAAGGGGAAAGTCAAACCATTGAATTTGATGATGAAGGATATACGCTAC
GTGGAAGCTTTTTCTCAGCTGGGGAAGACTATCAATATAGATAACAAGAT
TAAAGATCAGTTGAAGCAATTTGTTTGTCACTTATACGGTTGGAGACAAA
CCAAGTCACTGCAAGACGTTAGATACAAGATGTATTGCCAGAGTGGAGGG
AAATTGTCCTGCGAAAAACTGCCACCGTGTGACGATGTCCTCGAGCTACA
CATCATCAGAGCCAACTACCAAGCTTTCATTTGGCGACAAAGCTTGGTCA
CACAGCAGCAACAAGACGTTCCAACAGAAAATGGTTGGCTTTTGAATGAA
GATGGGTCTTACGATATTGAGTGGATGAGATGCAACCCTGCACCCGATGA
GATCCTTGAGCTGGTATCTTGTGACTGTAAGAAGAAATGTGACGAAAACA
GTTGTTCATGTGCAGTCAATAACTTGAAGTGTACAGATATTTGCTCTTGT
AATGATTGTGGCAATATTGAAGCGATAGAAGTTGATGAGGAAATGATGGA
TGAATACGAACAAGTTCTCATCTCAAGTCCAGATACAGATGTATTTGTAA
TTTGTCTTGGGATGCAACATATGATTAATGCCAATGTATTTTTCCTCACC
GGAGTGAAGAATTCCAGAAGAATTATTGACATCACAGCCGTTGCAGAAAA
TGTAAATGCGTCATTGAACCAATGCGAAGCTTCCAAAGATTTGATCCTGG
AGTCATTGATCGGCCTCCATAGCTTCACTGGTTGTGACACCATTAGTGCT
TTCGCTGGGAAGGGGAAAGTCAAACCATTGAATTTGATGATGAAGGATAT
ACGCTACGTGGAAGCTTTTTCTCAGCTGGGGAAGACTATCAATATAGATA
ACAAGATTAAAGATCAGTTGAAGCAATTTGTTTGTCACTTATACGGTTGG
AGACAAACCAAGTCACTGCAAGACGTTAGATACAAGATGTATTGCCAGAG
TGGAGGGAAATTGTCCTGCGAAAAACTGCCACCGTGTGACGATGTCCTCG
AGCTACACATCATCAGAGCCAACTACCAAGCTTTCATTTGGCGACAAAGC
TTGGTCACACAGCAGCAACAAGACGTTCCAACAGAAAATGGTTGGCTTTT
GAATGAAGATGGGTCTTACGATATTGAGTGGATGAGATGCAACCCTGCAC
CCGATGAGATCCTTGAGCTGGTATCTTGTGACTGTAAGAAGAAATGTGAC
GAAAACAGTTGTTCATGTGCAGTCAATAACTTGAAGTGTACAGATATTTG
CTCTTGTAATGATTGTGGCAATATTGAAGCGATAGAAGTTGATGAGGAAA
TGATGGATGAATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051985-exon-scaffold_208-1491911889:306790..307442 | TCONS_00051985-exon-scaffold_208-1491911889:306790..307442 | Clytia hemisphaerica | exon |
| TCONS_00051985-exon-scaffold_208-1510915933:306790..307442 | TCONS_00051985-exon-scaffold_208-1510915933:306790..307442 | Clytia hemisphaerica | exon |
| TCONS_00051985-exon-scaffold_208-1575043694:306790..307442 | TCONS_00051985-exon-scaffold_208-1575043694:306790..307442 | Clytia hemisphaerica | exon |
| TCONS_00051985-exon-scaffold_208-1491911889:307580..307736 | TCONS_00051985-exon-scaffold_208-1491911889:307580..307736 | Clytia hemisphaerica | exon |
| TCONS_00051985-exon-scaffold_208-1510915933:307580..307736 | TCONS_00051985-exon-scaffold_208-1510915933:307580..307736 | Clytia hemisphaerica | exon |
| TCONS_00051985-exon-scaffold_208-1575043694:307580..307736 | TCONS_00051985-exon-scaffold_208-1575043694:307580..307736 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_208 | supercontig | scaffold_208:306790..307736 + |
Blast
The following BLAST results are available for this feature:
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