TCONS_00051890 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051890
Unique NameTCONS_00051890
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length448

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051890 ID=TCONS_00051890|Name=TCONS_00051890|organism=Clytia hemisphaerica|type=transcript|length=448bp
ACTCCACTCTGGCCGCTAAATAGCAAATCAGTGATTCCAACTTTTCTATT
ATTCCCAGGTTTAAAGAAGGATGTCAGAATTGGATGAGGGACATTAGACT
AACTAACGGTAAGCATGTAATTGTACCCTTAAAAAATCCTACAATTTTGA
TACCCGTGTAATTACGCATTTAAATCTCTGAGTTAAGCGTGTATCCCaga
ctgaacaaaaaaaaacagaaacgaGAAAGAattgttgtttttatcttgAA
TGCCTCATTGAAAAATCAGAGGATTAAAAAAGCAAAGGCATGTAAGATAA
TTCAGCAGTAATTTTTTAGATTGTTTGGAAACCCCTCTTAAAATTGACAC
AAATCTTTTATATTATCATGTCAATGAAACTTCATCAATCAATCTATATT
GCTATTTCTATGATGATGGAAAAGTAACTGTATACATGTTACCAAGCA
Run BLAST on NCBI

transcript from alignment at scaffold_205:367634..368081

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051890 ID=TCONS_00051890|Name=TCONS_00051890|organism=Clytia hemisphaerica|type=transcript|length=448bp|location=Sequence derived from alignment at scaffold_205:367634..368081 (Clytia hemisphaerica)
TGCTTGGTAACATGTATACAGTTACTTTTCCATCATCATAGAAATAGCAA
TATAGATTGATTGATGAAGTTTCATTGACATGATAATATAAAAGATTTGT
GTCAATTTTAAGAGGGGTTTCCAAACAATCTAAAAAATTACTGCTGAATT
ATCTTACATGCCTTTGCTTTTTTAATCCTCTGATTTTTCAATGAGGCATT
caagataaaaacaacaatTCTTTCtcgtttctgtttttttttgttcagtc
tGGGATACACGCTTAACTCAGAGATTTAAATGCGTAATTACACGGGTATC
AAAATTGTAGGATTTTTTAAGGGTACAATTACATGCTTACCGTTAGTTAG
TCTAATGTCCCTCATCCAATTCTGACATCCTTCTTTAAACCTGGGAATAA
TAGAAAAGTTGGAATCACTGATTTGCTATTTAGCGGCCAGAGTGGAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032842XLOC_032842Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051890-exon-scaffold_205-1491911889:367634..368081TCONS_00051890-exon-scaffold_205-1491911889:367634..368081Clytia hemisphaericaexon
TCONS_00051890-exon-scaffold_205-1510915933:367634..368081TCONS_00051890-exon-scaffold_205-1510915933:367634..368081Clytia hemisphaericaexon
TCONS_00051890-exon-scaffold_205-1575043694:367634..368081TCONS_00051890-exon-scaffold_205-1575043694:367634..368081Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_205supercontigscaffold_205:367634..368081 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.445327	0	1.68074	1.31547	0	0.158187	0.190846	0	0	0	0	0	0	0	0.0842905	0	0	0	0	0.330248	0.143523	0	0	0	0.159376	0	0.203544	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051890 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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