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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051817 ID=TCONS_00051817|Name=TCONS_00051817|organism=Clytia hemisphaerica|type=transcript|length=963bp
AACGAGTTTAATGTACAAAAATTCGACATTTTTTTGTCTGCTGTTGGAGC
GTCTGGTTTGTGTTGCTGTTGCTGTTAATGATATTATTGGCGTCATTTTT
TTgtcatagaaaaagaaaaattaattacaAGTCGATAACAAATCAATGAC
TTGGTTAGAAATGAAAACCTTTCACAACCTTTCAGAAAGATAACAAAGGA
GAGATGTCATTAACGAGCTTATCCTGTTGCAATTTGCTTTAACGGGATTG
TTTTTGTTCTCGAATCTTATGAAATGCGTGCAAGTCATTAAACTATACAC
TCAACTCAACTGGGAGAAGAAATCTTTTGTGATTGTTTGAAAAAGAATCG
TGTGGTTTTTTGgttgtttgattttattgatgaaTTGTTTTTATAACGAG
TAAAGATGATGGCTATCGTCTGATGAGAAATTGTTGTGCAGAATATTTAC
TGTATTTTGAAGAACTTTCACTTTTAATATTTGGATACAAAATGGCAAgg
catttcattttcttaatgCTATACGTTTTGTTATGGCAAAAAGTTGACAG
TTGTGACTTGGAACGTAATCTTGTCATCATGATTGATTCCACATCTGGCA
CAAACCCTGGTGATTTTGgatctcaaaaaagtttcattgAAATCTTACTG
AACgaaatcaacaaaaccaaaatACGCCTGACAGCTCAAGTGTACAGTGA
TGAAGAGACTTGCTCGAAATTTGTCGGCGGTGATGTGCGGACAACGATTA
TCAATGAAACGAATTTCGATCAAATCCGTTCGAAACTTGTTATTTTAAAA
TATGAACGATCTAGTATCGATTTCAATCTAAATTGCGTTCAAAATTTGGT
CCGCAATACAATAATAAATTCGAATTCATTCGCATTAGTTTTAGCTAAAT
CACAGTCAGTAAAAACGCAACTGTCAAAAAATGATGACTCGTCATCAACA
ATCCCAGATGACG Run BLAST on NCBI transcript from alignment at scaffold_205:256544..259480+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051817 ID=TCONS_00051817|Name=TCONS_00051817|organism=Clytia hemisphaerica|type=transcript|length=2937bp|location=Sequence derived from alignment at scaffold_205:256544..259480+ (Clytia hemisphaerica)
AACGAGTTTAATGTACAAAAATTCGACATTTTTTTGTCTGCTGTTGGAGC
GTCTGGTTTGTGTTGCTGTTGCTGTTAATGATATTATTGGCGTCATTTTT
TTgtcatagaaaaagaaaaattaattacaAGTCGATAACAAATCAATGAC
TTGGTTAGAAATGAAAACCTTTCACAACCTTTCAGAAAGATAACAAAGGA
GAGATGTCATTAACGAGCTTATCCTGTTGCAATTTGCTTTAACGGGATTG
TTTTTGTTCTCGAATCTTATGAAATGCGTGCAAGTCATTAAACTATACAC
TCAACTCAACTGGGAGAAGAAATCTTTTGTGATTGTTTGAAAAAGAATCG
TGTGGTTTTTTGgttgtttgattttattgatgaaTTGTTTTTATAACGAG
TAAAGATGATGGCTATCGTCTGATGAGAAATTGTTGTGCAGAATATTTAC
TGTATTTTGAAGAACTTTCACTTTTAATATTTGGATACAAAATGGCAAgg
catttcattttcttaatgCTATACGTTTTGTTATGGCAAAAAGTTGACAG
TAAGTTCTATATATTCCCATTTCGTTCAAAAAGATAACACAGTCTTTCTT
ATATTTACTGCAATTTTACCAAGTTCGTTTtgtttttacagagaatttgt
CTATTTACTTTTAGTTTTTAGGTTTCTTTTATGTATAAAATCGTGattca
tatttcatttttgtGTTTGTGTCAATAGTTACCTATGTTTGACTCAGTTT
GTCTAAAAAATGAACAAGTGTGCTCTATGTTTTAAACTTTTGCTATACTA
AAAAACACGATCATTTTCACAGCAGGTTTTCACAGAAATAATACAGCATC
ATACTCAACAAGTGATGTGTACTGCACTGCTTGAACAGACTTCTTCATAG
CtcaagaaataaacaaaataacttTCTTTATCTTGAAAAAGAgtatactt
tttataagaactaactaAAACTAACTTGATATTACATAATAAAGACCTTA
TCTCTGATTTAAAGAAATTGGCAATTAATCCATATTGTGAAATAGACTCA
TATCCTTCTAAGCTCCTCCTTAAAATGAGCCatgagttcttataaaaacc
gaATGCATAACAATTTTATTGTTGGAACCACTCAcatcttttcattttca
attcctGTACAATGAATGATTGATTTATTTTGCTTTACTTTTCCTCTTCA
ATTGACGTCATCTATTTAGATTCATCTCATTGTTCGTTTGTTGAAATCGA
AGTTCCTTGTTGACTGGGTGGGATCGGAGCAAAACTCctacaactcgaat
gtctccttaagcAGTAGCGATGGGTCGACTAAAGTTCGCGCAAACTGGGG
CGGCAAGATTTTGACTGTCCTTAAGTCGAACAGATTAATTAAAGAGTTTA
AACTGTATTAAACTGTAGTCCCCTCAATTAACAATGCCTATAAACCTTAC
TGATACTCCATATCTCAAAATTTACATCACCTCGAACAAATAtctgttcc
ccgtgcgtgttcgactCGACTGTATGATATGATACTCCTCCTCCTCCCTA
TATTACTTAAACAACCTTTTTAGCCTCAACCTTTCGGGTAAAAATTGTCT
TCAATAATCACAACTGAGGAAATCTTAAATGCACTCCCACTCGAGAAAGG
TCAAAAGAGGGAGGGGAGAGTATTTCTCCTTTAATTTCACCTGTTTTAGG
CGCCATTAAAATAAGAAGTACAAAATCATGATATCCTGCTATCATTTTTC
TGTTTGAAGTATAGAAAGGATATATGGAAAATACATTAGAAACATGAATA
ATTGAAGCTTTTATTCAATTACAGAATGTACAGCCTCCATCAATTGTTTA
AAAACACTTACGAATCGCACAGGGGGGTTCACTGATGTTTTTGCGTCAAA
GTATagtttatgtctttctttttccACGTTTAACTTAAGAATTTCTGTAA
AATCAAAGAGCCCTCTTGATGAAACTCGCTAGAAAGAAGGGCCGAATTTC
GGGGTAAACTCAGGGGTAATCAACGCAATGTTTACCTTGCTCTCTAATCA
GAAACTTTGAAACCAACCAGAAATGTACTCTTATCTTTGATACAAGACTG
TATATAAAACGAAATTTTTACACAATCCAAAAACATATGTGTTATGTAAA
TCACTCCAACAATGTCTACGAGGATagccctttctcacagacccactcgg
ggaaaattatcctccaatttttgtcccgactgaaataatcaaattaacaa
gtcctcactgcaaaatattacgCTATTTTTCCTATCTCCACTAAATTTTC
TAACTTGAATGAATTTGAAACgtgaaagaattgaaatccccaggcATAAA
CAATATGAAAATATCAATCCGTatcttccattatttttacccccactggc
taaaaAGATCCTACCGGGTGATGAAAAGAGGGTGTTCGTGGACTTTGCTT
TAATATTGCAATACAACCCTACCATATCTGAAAAATAAACTAGAATAAAA
ATCTAATCTTATTTCTTTTATAGGTTGTGACTTGGAACGTAATCTTGTCA
TCATGATTGATTCCACATCTGGCACAAACCCTGGTGATTTTGgatctcaa
aaaagtttcattgAAATCTTACTGAACgaaatcaacaaaaccaaaatACG
CCTGACAGCTCAAGTGTACAGTGATGAAGAGACTTGCTCGAAATTTGTCG
GCGGTGATGTGCGGACAACGATTATCAATGAAACGAATTTCGATCAAATC
CGTTCGAAACTTGTTATTTTAAAATATGAACGATCTAGTATCGATTTCAA
TCTAAATTGCGTTCAAAATTTGGTCCGCAATACAATAATAAATTCGAATT
CATTCGCATTAGTTTTAGCTAAATCACAGTCAGTAAAAACGCAACTGTCA
AAAAATGATGACTCGTCATCAACAATCCCAGATGACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051817-exon-scaffold_205-1491911889:256544..257092 | TCONS_00051817-exon-scaffold_205-1491911889:256544..257092 | Clytia hemisphaerica | exon |
| TCONS_00051817-exon-scaffold_205-1510915933:256544..257092 | TCONS_00051817-exon-scaffold_205-1510915933:256544..257092 | Clytia hemisphaerica | exon |
| TCONS_00051817-exon-scaffold_205-1575043694:256544..257092 | TCONS_00051817-exon-scaffold_205-1575043694:256544..257092 | Clytia hemisphaerica | exon |
| TCONS_00051817-exon-scaffold_205-1491911889:259067..259480 | TCONS_00051817-exon-scaffold_205-1491911889:259067..259480 | Clytia hemisphaerica | exon |
| TCONS_00051817-exon-scaffold_205-1510915933:259067..259480 | TCONS_00051817-exon-scaffold_205-1510915933:259067..259480 | Clytia hemisphaerica | exon |
| TCONS_00051817-exon-scaffold_205-1575043694:259067..259480 | TCONS_00051817-exon-scaffold_205-1575043694:259067..259480 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_205 | supercontig | scaffold_205:256544..259480 + |
Blast
The following BLAST results are available for this feature:
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