TCONS_00051809 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00051809
Unique Name	TCONS_00051809
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1381

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_205:208118..215764+

transcript sequence

>TCONS_00051809 ID=TCONS_00051809|Name=TCONS_00051809|organism=Clytia hemisphaerica|type=transcript|length=1381bp
ACTACCGAAGAATATGCACTGAAAACACCATCCAAAGATTACCATTTAGT
ACTAAAACCTTCCAGCCATATCATTGGCCCGAACCTTTTCGAAGATGAGA
AAAGTTGGGAAGAAGAAAATTGTCATTACCAAggattggaaaaaaatttt
ggtggaCAAGTTCTTCTTTCAACATGTGGCGGAACGTTGAAtgGATTGTT
GGTGGAcggcaaacaaaacaaaacgtaTATGGTGGAATACGAGGAAAGCC
TTGCGAATCACATCGTGTATGAAGTTGACAAATTACCACAAAACAAACGA
ATCACCATGGCAACTGATATCCAAAGAAATGAAATTACAAAAGTTGAAGG
CGTTAACATCAAAGCAAACCACAGAGCGCGTCGAGACGTTTCAGTGGACG
CATCAGACGTTTCAGTGGACGCATCGGACGTGGAGAAGTATGCTTCATTG
GTCATGGTGGTCGACAATTCAGCCTTCGTGCATCTTGGCAGCGATAAAAC
GAAAGTGATTCATTTTGTACTGGCTATTGTCAATCACATGGACTTTTTAT
TTCGCCAAGCTAACATACACGTCATTCTGACCCATCTTGAGATTTGGGAT
GTCAGTGACAAATTCACGGTGACGGCAACAACAAGTGACAATCTGAACCA
CTTCACCCAGTACAATAAAGATATCATGATCAACCAAAATGGATGGAGGC
ATGATAATGCTCATTTCTTAACTCATGTAGACCAACAAGGTGGTTTGGTT
GGACTTGGAGCCGTTGGCAGCATTTGTGGTCAAGGTGGACTTTCACAAGC
TATGTCTCAGATTTGGAGTGACAACCCTTTGATAACAGCTGGTACGGTTG
CCCATGAGTTTGGACACAATGTTGGATTATACCATTTTACATCAGAATGC
ATTTGTGATAACCCACCCTGTCTCATGTCTTCATATGCAAATTGGTCACC
AGTTCGAGGCTTGACAGATTGTACAAAGAAAGTGATCGAGGATAGATGTT
CACTTGGAAAATGTTCCTGTTTGACTGACCAGCCTGCTGCGAGTTACATG
GGAGCAACATGTGGAAATGGGATCGTTGAGAAAGGTGAAGATTGTGATTG
TGGACAACCCGAGTACTGCACAAATAAATGTTGTGATGCGTCCACGTGTA
AATTTCAAACGCATGCACAATGCGCAGAAGGTGAATGCTGTACAGATGAT
TGTCAACTGAAAGCAAAAGATGTGCTTTGTAGAGATGCACAGGGAGAATG
TGATTTACCTGAGACTTGTGATGGAAAGCAAGCAACGTGCCCTTTGGATG
TTTACTTGCAAGATTACCAAGATTGTAACTCAAAAACAaGCTATTGTTAC
AAAGGAAAATGTACAAAAACGTTGAATGAAC

Run BLAST on NCBI

transcript from alignment at scaffold_205:208118..215764+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00051809 ID=TCONS_00051809|Name=TCONS_00051809|organism=Clytia hemisphaerica|type=transcript|length=7647bp|location=Sequence derived from alignment at scaffold_205:208118..215764+ (Clytia hemisphaerica)
ACATCAATCGATAAGATTTCTGTTTACAAAACACATTGATATGTAGGCGG
TGTAGATTTCAAATATTTGCCATGAGTATGAACTATTAGTTTATTCATTT
GTCTAAATGTGTacataagaatatttttggagaaaacCTTCAAATACTGA
AAGTATATCGCTTTCCGTATCGATGTCGACATATGCCGACAAGAGCATTT
TCGATTACTTTGCCGGTATTTGCCGACAAGAGAGGTCTCTACCCATTTGC
CAGaggtttttttaaagtttattgaaagttcgattttgaactagatacac
gtttttttttttattagaacacctaaaatttggctgagcctggatgtgct
tatttttttagcaattttcagcctgaaatgttcttaaNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNatctaaatcgacaatatgatacaaaa
taaagagcacttaaatttggcaaaatttggacaatatttgactctcgact
tttgaagatccacccctaaattcggttaaaactgcttaaaaagaggaaaa
aattgtagtttcttgacatttttttccaaactgaggctgggcatgttctt
aagatgttcttaatgtttcgacgaatttcagcctatatgttcttataaac
taggttctaataaaaaaaaaaacgtgtagcacaTCATCATCACTAATTCA
ACTTTCAAGATACCAAAATCCTTattgaactaaaaaaaaccTTATTACAA
CAAACGAATTTGGGTGTAAccaaaagaatttcttttttttttccctcCAG
GACACTACCGAAGAATATGCACTGAAAACACCATCCAAAGATTACCATTT
AGTACTAAAACCTTCCAGGTAGATACATCAATTTCCctacatttttattc
gaaatcGTCAAATCTTCACCTTTAAGCCCCGagaaaaaagggcaaaaatt
cATTCAGAGTCGTAGTTATTTTTAACCAagtgaatttatttttcagCCAT
ATCATTGGCCCGAACCTTTTCGAAGATGAGAAAAGTTGGGAAGAAGAAAA
TTGTCATTACCAAggattggaaaaaaattttggtggaCAAGTTCTTCTTT
CAACATGTGGCGGAACGTTGAAGTAAGATTACATTTTGTTATTGAGAACA
TCcgatttttttgaagccttcggatgttcttaaatttttcagttttaagc
ctaaaaatgttcttaacatgttcttattttcactattttgtgaccatttt
tacctagtttcctaaaaaatcgggtgttttagagtctgcaaagccttaaa
atgttcttaatttgttcttaaaatttttgccatcgaagccttatgttctt
atatagtttgttcttataaaaaaacgtgtactttgaACTACCAAAAGTTT
CGAACACTTATTTCAACTGATCTATCTATTgtcttttaataattttcatt
gtctgttcaaattataaaaatagtgGATTGTTGGTGGAcggcaaacaaaa
caaaacgtaTATGGTGGAATACGAGGTTAGTTAATTTACCAATCTTTCAA
AAAGGGATACACCTATTCTACATGGTGTACCATTTGTTATGGAAGTTATC
TTCTAAGAGTTCACCACTCTCTTCATACAATGCACGTCTTTCATCTCTGG
GCGCAACCGCAAACCAACCATTGTAACACTCAAAGAACCAAACGATATTG
AAAACTGGAGCAAAACGGCATTAACATTTCCTGAATGACATTTCACATAT
CATTTGTTTTCAGGAAAGCCTTGCGAATCACATCATGTATGAAGTTGACA
AATTACCACAAAACAAACGAATCACCATGGCAACTGATATCCAAAGAAAT
GAAATTACAAAAGTTGAAGGCGTTAACATCAAAGCAAACCACAGAGTAAG
TCAAAagattttgggccgaacgtcaATTAACAAAACTTCGTATAAACACA
AATAATTACTATAGAAATCANTTCAGCCATATCATTGGCCCGAACCTTTT
CGAAGATGAGAAAAGTTGGGAACAAGAAAATTGTCATTACCAAggattgg
aaaaaaattttggtggaCAAGTCCTTCTTTCAACCTGTGGTGGAACGTTG
AAGTAAAAATTCTCATATATGTACCGAAAGTTTCGAACACTCGCCGCATC
AGATCTTATTGTCTGATGACAATCTTTATTGTCAATCACCTGTTCAAAGT
CCTTAACAGCAAACTCTAGCCCAGTCCCCTAGTTCATtcttttatgattc
tgatagcgtcCATCacatccatcagtaaaatcaaaaagtggtgcaGTGAC
GAGATTGCTTATACAggaatcagaaaatatcatGACAATTAATCCTTTTT
CTTTTCCAATAGTGGATTGTTGGTGGAcggcaaacaaaacaaaacgtaTA
TGGTGGAATACGAGGTTAGTTAATTTACCAATCTTTCAAAGAGGGATAGA
CCTATTCTACAAAGAGTTCACCACTCTCTTCATACAATGCACGTCTTTCA
TCTCTGGGCGCAACCGCAAACCAACCATTGTAACACTCAAAGAACCAAAC
TTTGGTACTTCTCGAAGCACCAAGACATTTTCTGAAATCTCCAACGATAT
TGAAAGTTGGAGCAAAATGGCATTAACATTTCCTCAATGACATTTCACAT
ATTATATCTGTTTTCAGGAAAGCCTTGCGAATCACATCGTGTATGAAGTT
GACAAATTACCACAAAACAAACGAATCACCATGGCAACTGATATCCAAAG
AAATGAAATTACAAAAGTTGAAGGCGTTAACATCAAAGCAAACCACAGAG
TAAGTCAAAagattttgggccgaacgtcaATTAACAAAACTTCGCATAAA
CACAAATAATTACTATAGAAATCATATTTAACCTCCCAGTGCAATCTCAT
ACACAGAATTATATTCCAgcactttttgtttttaatgataATCCATGACG
CATGCGCTCCGAGGGAAGGGGGGACTCAAGTTAAACGACCGCACGTGCAG
TCTATAAGGGTGTGTTTTTTGGGCTTTTcaaagtacactgtaagggtcga
aatgagagAGAGTGTACTCTATGTGTATAAAAAGTTAGGAACACGAATTT
CTTATGggtaaaaatctgaaaaaacttatcttttttttttgctttaaatg
gaCAGACAAAAGAAATTCCACCCTAAAGGTCGATCTTTACCCATATTTAC
TCAAGCGAAGGGAAGGACTGTTATGAATGTGCATCCAGTTGAATAGCACG
GTAAAGAGTTctgattttaaattaattttcagGCGCGTCGAGACGTTTCA
GTGGACGCATCAGACGTTTCAGTGGACGCATCGGACGTGGAGAAGTATGC
TTCATTGGTCATGGTGGTCGACAATTCAGCCGTAAGTAACACAATGGGTT
TCAATgggtttcattttttattgtcgAATGGAGTCGTAGAGAATTATATA
TAATAGAGAGTAACTAACACTGGATAAAATTAGCTAATATATGTCCTTCA
TGTTTCCTTATTGCAACCAACTTACTtacaaaatttgatttgaatgcGAT
TTATCAGATATTAGCGATGTGAAAGTCTCGCTAATTGCAATCTCAGCCAG
GTTCTTCTCAGTTGACGGGTCTGATGATTGATTGAATTTGATGGTTGTGT
GATAACAAACTTTGTTCTCTACTATTTAGTTCGTGCATCTTGGCAGCGAT
AAAACGAAAGTGATTCATTTTGTACTGGCTATTGTCAATCACATGGACTT
TGTAAGTAAAATAAATCTCAACGAAATATACATACTAACAAAGGGTGGAC
GAATGAAACAAACTTGAAAAGAGAATTTGGAATAAGGCCTTGATATTATT
CAGCTTTAAACCTATctactactttaggcgtacgaactttcgcaagcaga
aactttcgcgaggtcgaaaaatcgcgaaattcacgacatttacttttgcg
aatttgaggataaaaatgagaattctcGACTTTAAAAGGGCATTAAAGGA
TAATAATATGCCGAAAATTTGATGtttattacgatttcgaggTTTCATAG
ATTTCcaacttttttgagaatttttcacaagcataaactttcgcgaattg
ccctgtttagaattttcaaagacatttactttcgcaaaaaacgccgaaaa
tcgcgaaaatcgcgaaagtttctgatcgcgaaagtttgtacgcctaaagt
attctaTATACAAGTTTCGAGCATTTCTCTTCAGGTCCTTTTTTAAGCTT
GGCAGTTGGTTCgtttttattctaaattttattcatttataCTTTTCAGT
TATTTCGCCAAGCTAACATACACGTCATTCTGACCCATCTTGAGATTTGG
GATGTCAGTGACAAATTCACGGTGACGGCAACAACAAGTGACAATCTGAA
CCACTTCACCCAGTACAATAAAGATATCATGATCAACCAAAATGGATGGA
GGCATGATAATGCTCATTTCTTAACGTAAGAAAAATATGAACTAAACTTT
TACCAAGCTTGACGAGTAGAAAGTCCAACTAGAATCGATATTTGACGTTT
ACATAATTATAGTCTTTTGATTGCCTTCACGAGGCCCACAGTCAGCCGGT
TCCGACTATCTATAGACTGAACGAATCATTGGAAGGAACAGGGATGAGAA
CAGGGAGCTCCTTATTGTGGCGCTGATACCACTTGACTATCCCTTCCATG
TTCCATTTCTCTATCACCTTAAGAACTATCCGTTAAATTTGCTTTCAAAA
AAGTGTGATCTAGTGGTTACGACAGTCGTGAGCTCTCCCAGTTGTCTTTG
ATTCACCTCTGATTCTTCAAGTCACGTGGTAAATATCGCTTTTTTGCACG
GTTCTTCATCAACATGAGTATTAAATGAATAACCGATCAGAACGAAAAAT
TTCTCAGCATTTCTCATTATTCTTTGCATCACATTTTCTAGTCATGTAGA
CCAACAAGGTGGTTTGGTTGGACTTGGAGCCGTTGGCAGCATTTGTGGTC
AAGGTGGACTTTCACAAGCTATGTCTCAGGTACAATTTATTCATTTTACA
TGAGCTAGAAACCAGGGGTACTCAAGACTGCCGGAGCCGGAGGAGTTAGG
AAAATAAACCCACTTTCAAATCTCCTTTTCAAAACGATGCAATGTTATCA
GAATAAAATAAGGCTTGAAGTGATTTTATCTAGTCGGTctagatgaaaaa
atattaaatttaacgaatcaaatattttcaatcgGAATTTAAACCGTATG
GGTGATGCAATATCCATCCTAAAAATTACACTTTCTTGTTTATCGTATCA
CTTATATTAAAGCAAAAAACAACATCCTTTTATCACGAGAAATTCTTCTT
CAGTGAGCGGAAATACcaaaagatttcttttaaatCGCCAAGCAACACTG
TAAAAACTCCTAAGATCCATATTTTGTCACTGCATGACAACGTTTAACAA
CGAAAAACCGACAAAAAAGAGCTAACGCCGACGGGCAAACCATCAAACAT
ACACGCCCTCTCCTTACTTTTCCGGTATTCTGATCACGAATTCGTAAAAT
CACAAACTTTTTATAATGCCTTcttgaaaaaggtttgaaattttcgaaat
aatGTCAAACAAATCAACTTAAAGAGCTTGATTTCAAGAGCAGCGACATA
GGGCGGTAGTTAAAAGATAATACATTAAAGAGACGAGTTGGTATAAAACT
AGAGTTATAAATACTATAACCTGATCTCTCAATCTTAGATTTGGAGTGAC
AACCCTTTGATAACAGCTGGTACGGTTGCCCATGAGTTTGGACACAATGT
TGGATTATACCATTTTACATCAGAATGCATTTGTGATAACCCACCCTGTC
TCATGTCTTCATATGCAAAGTATGAACTACTCATTTTGACAAGAAAAGTT
TTGGGGATATAATGACCGTTCTATGGAAATGCAATGATAGTTCTTCGAAA
AGCTTCGTTTCTCTGATTTTGCGTTGAGTTTGACCAATGATAGAGTTTGG
TCAGGATAATTTTCGTTTTGAAGGCAATTATCAGAACGCAGAAATATTTA
ATGCTACTTGTAATTTCTAATCTATTTCTTTTGACTTTAGTTGGTCACCA
GTTCGAGGCTTGACAGATTGTACAAAGAAAGTGATCGAGGATAGATGTTC
ACTTGGAAAATGTTCCTGTTTGACTGACCAGCCTGCTGCGGTAAGAAGAT
TGCAAAACCGAGGATAAATTGGTTTAATATTTTTCGCTGAAAACGGGGGA
GATTGAAAACATAAAACCCAATCTTTTCCGGCAGGGTGCGGGCATTTCTA
ACCTGGCTGTGAAATCATGGTGAACTTTCGAAGGTCCATACTAGGACGAA
CCTTCAACATGGACCCTTCACTTggaattttcacaatttttcatcaattt
caaaCGTATTATTTCTTCTATTTGACAGAGTTACATGGGAGCAACATGTG
GAAATGGGATCGTTGAGAAAGGTGAAGATTGTGATTGTGGACAACCCGAG
GTTCGTTTCTTGGAAGATTTGCTTGAATAAGATTTCTCAAGGAAGAAAAG
AAATAGCGTTTCCAAACTATTATAGAGACGCTAGATCTAATATTTTCGTA
AAGAGTTACAGATACAACTAGAGAAGAAATCAGCTCAACCTTAACGAATG
AAATCGAAGTTAGACCATAGGAGAGTGTGGTAACGCACGAGGcggaatct
tcgagttagaaaacttcgagttagcaattttcgagttagctaaattcaAC
ATTCTGTAACTAAAATCTACACTATTAAATAAACTCTTCTTCTTCTCTAC
TTAGTACTGCACAAATAAATGTTGTGATGCGTCCACGTGTAAATTTCAAA
CGCATGCACAATGCGCAGAAGGTGAATGCTGTACAGATGATTGTCAACTG
AAAGCAAAAGATGTGCTTTGTAGAGATGCACAGGGAGAATGTGATTTACC
TGAGACTTGTGATGGAAAGCAAGCAACGGTGAGTGTCCAAAGTCATCGTC
TCAGTGTATTTAGACCCTGTAGAAAAGAAAATGCATAATCAGCAAATTTG
GTTCAACCATTTCATTTACAGCTACTATAAATACAATTTTATCATTATGC
AAATCGACATAAATGCATGAAGCTACATAAATtgagattcttataaaaat
gagtTGACTTTTTCAGTGCCCTTTGGATGTTTACTTGCAAGATTACCAAG
ATTGTAACTCAAAAACAGTGAGTATTCTTTTTTTCTGTTACCAAAAAATG
tattaaatttaacaaaaatctttttccttgTATTNATTCTTTCTGTAACC
AAAAAATGtattaaatttaacaaaaatctttttccttgtatatctttatt
tttcaaaattttgaagtgttttttcaaaatccatcGTTGTCATGTCTTTT
TTCTCCTTATTTCCTTTTAAAAGTTCCCTTTTCCATGATTTCCAAGTTTT
CCCTAAAAAGCTTCTATCGCCAACAATTACCAGCCTTACCATTCTGACCG
GCCTGGCGATATTCTAGAAGTCAGATTTTCTAAACTTTAGAATGTAATTA
AAAATCTGTACCCAGTACCGTGGGATAACGATTaagaattttcatttctt
tcagaGCTATTGTTACAAAGGAAAATGTACAAAAACGTTGAATGAAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_032802	XLOC_032802	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_205	supercontig	scaffold_205:208118..215764 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0295191	0	0	1.6273	0.872122	0.349272	1.84778e-07	7.23387	13.92	14.5505	11.8518	1.22278	0.996483	1.6381	2.64538	1.0488	0	1.25908	1.4824	0.335655	0.654827	0.286645	0.472348	0.80073	0.451905	0	0	0.157292	0.777681

Blast

[Close]

BLAST of TCONS_00051809 vs. Swiss-Prot (Human)
Match: ADAM8 (Disintegrin and metalloproteinase domain-containing protein 8 OS=Homo sapiens GN=ADAM8 PE=1 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 1.470e-56
Identity = 140/431 (32.48%), Postives = 206/431 (47.80%), Query Frame = 1

Query:   97 EKSWEEENCHYQG-LEKNFGGQVLLSTCGGTLNGLLVDGKQNKTYMVEYEESLANHIVYEVDKLPQNKRITMATDIQRNEITKVEGVNIKANHXXXXXXXXXXXXXXXXXXXXEKYASLVMVVDNSAFVHLGSDKTKVIHFVLAIVNHMDFLFRQANIHVILTHLEIWDVSDKFTVTATTSDNLNHFTQYNKDIMINQNGWRHDNAHFLTHVDXXXXXXXXXXXXSICGQGGLSQAMSQIWSDNPLITAGTVAHEFGHNVGLYH--FTSECIC----DNPPCLMSSYANWSPVRGLTDCTKKVIEDRCSLGKCSCLTDQPAASYM--GATCGNGIVEKGEDCDCGQPEYCTNKCCDASTCKFQTHAQCAEGECCTDDCQLKAKDVLCRDAQGECDLPETCDGKQATCPLDVYLQDYQDCNSKTSYCYKGKC 1362
            E+   +++C YQG +E        LSTC G      V    +    ++       H VY+ + L Q       +D   + +  + G    A                   S   +Y  L +VVDN+ F  LGS+   V H VL +VNH+D L+++ N  V+L  LEIW+  D+F V+   S  L +   +       ++   HDN   +T VD  G  VG   V ++C     S A++Q  S NP+  A T+AHE GHN+G+ H      C C    +   C+M+     S  R  +DC++  +E      +  CL + P  S++  G  CGN  VE+GE CDCG PE C N+CC+++TC+    AQCA G CC  +C++K    LCR  +  CDL E CDG+   CP D + ++   C+    YCY G C
Sbjct:   97 EQPRGQDHCFYQGHVEGYPDSAASLSTCAGLRGFFQVGSDLHLIEPLDEGGEGGRHAVYQAEHLLQTAGTCGVSD---DSLGSLLGPRTAA--------VFRPRPGDSLPSRETRYVELYVVVDNAEFQMLGSEAA-VRHRVLEVVNHVDKLYQKLNFRVVLVGLEIWNSQDRFHVSPDPSVTLENLLTWQARQRTRRH--LHDNVQLITGVDFTGTTVGFARVSAMCSHS--SGAVNQDHSKNPVGVACTMAHEMGHNLGMDHDENVQGCRCQERFEAGRCIMAGSIGSSFPRMFSDCSQAYLESFLERPQSVCLANAPDLSHLVGGPVCGNLFVERGEQCDCGPPEDCRNRCCNSTTCQLAEGAQCAHGTCC-QECKVKPAGELCRPKKDMCDLEEFCDGRHPECPEDAFQENGTPCSG--GYCYNGAC 508

The following BLAST results are available for this feature:

BLAST of TCONS_00051809 vs. Swiss-Prot (Human)

BLAST of TCONS_00051809 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ADAM8	1.470e-56	32.48	Disintegrin and metalloproteinase domain-containin...	[more]

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TCONS_00051809 (transcript) - C. hemisphaerica