TCONS_00051751 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051751
Unique NameTCONS_00051751
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1050

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051751 ID=TCONS_00051751|Name=TCONS_00051751|organism=Clytia hemisphaerica|type=transcript|length=1050bp
AGAATCAGGACCCATAGATTGTTGATAATCGGGCTGGTATTTTCATCACA
TGTAACAACCGTCCGAAATACGGCGACGATCAAAAAGACGTGGAAGATAG
GATGGAGTACATGCAGACAAAGGAAATTCCTGAGGACGAGCGTGACTCGT
TTGCAGCCACATGGATCCGTGAGCATGCGTTTGAATGCCTCCTCTGGATG
TGCAATATGATGCGCgaaaatgatgaatttattgatGAGAAGGAACTGTT
CTTTGTGAAAACAGTTGACGACTACGTACCAGTAAAGATTAACGTGTGTG
TACCAGATGAAGAACTTCGAAAGCTCGCTGGTATTCgtgataaaaaatca
accaacaaGACAACGCCGCCCGTGTCCAACCGAATCGATACAACAGCTTA
TATAGACGATGGTCAACAACCGGGCTTTTCAAAGTGGTCAGATGAGCACA
ATCCACCCCAGTGTGATTCAACTGATTCTGAAGAAAGGACAGCTGAGAGA
CTACGACGACTAAAGGAGAGAAGACGGGTACGAAAGCGTCACATTGAAAC
AACTGATGAAGACACAGAAGAAGACGAAGAAGATTTGTTATGCGGGGTCA
ATGAAACAATGAATGCCTTGCTGGCTCATCTTGACTACGCTGAAGATGGT
GAACAAGTAGATTTCGTGGCTACTTTCCTCACGACGAGCCGCGCTCATTT
CCTACGAAAAGCGGAAAAGAACGATCGCATTTTCAAATTCACCGAAATCA
ATACCGTCGAGTACTGGGCGGAAATGACTCGAACAATCGTGAAATGGTTC
GATAGAGGTCCAAAACGCTTGACTTTTGCACACTATAACACCTTCCATGA
CAACATGGCTCGCCACGGTGGTGTCAAAAGGCGGGGGGCAAAGCCTGCTA
TTGATTGTTGGTTTCTGGTTGCAGGACTAGTTCGCGATGGATTTGATGCA
AAATCGTACCTAGCTATGTTCCCTTGGATAGAGAACGACCTAAGGGCAAT
TCGCAAACACTTAGATattaaaactgaaagaaaacttatttgaaaaaaag
Run BLAST on NCBI

transcript from alignment at scaffold_204:39519..41772+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051751 ID=TCONS_00051751|Name=TCONS_00051751|organism=Clytia hemisphaerica|type=transcript|length=2254bp|location=Sequence derived from alignment at scaffold_204:39519..41772+ (Clytia hemisphaerica)
AGAATCAGGACCCATAGATTGTTGATAATCGGGCTGGTGAGTACAGTGAT
TTTGTTTAGCTTGTTTTCTTATTTGCTTTTTTTCCAATGGTTGCTTTGAA
TATAGCCTTTTTCGCGTTGTGGAATAGACACCCTAAGTGACTACGATCAT
TCTTTTACGTCAGGTATTTTCATCACATGTAACAACCGTCCGAAATACGG
CGACGATCAAAAAGACGTGGAAGATAGGATGGAGTACATGCAGACAAAGG
AAATTCCTGAGGACGAGCGTGACTCGTTTGCAGCCACATGGATCCGTGAG
CATGCGTTTGAATGCCTCCTCTGGATGTGCAATATGATGCGCgaaaatga
tgaatttattgatGAGAAGGAACTGTTCTTTGTGAAAACAGTTGACGACT
ACGTACCAGTAAAGGTAAAGTTTTATGTTGTATTTTACGTGAAGTTATTT
AGTTTAGAGTGATGTATTTCATTTTTGAGCACTTAATTTACAGAAACAAT
TAACTTGTGGTAACTTAAACACTgtcatttttgaatttaaaaccacTACC
GTTTCTTCTAGATTAACGTGTGTGTACCAGATGAAGAACTTCGAAAGCTC
GCTGGTATTCgtgataaaaaatcaaccaacaaGACAACGCCGCCCGTGTC
CAACCGAATCGATACAACAGCTTATATAGACGATGGTCAACAACCGGGCT
TTTCAAAGTGGTCAGATGAGCACAATCCACCCCAGTGTGATTCAACTGAT
TCTGAAGAAAGGACAGGTAAATTCTTTCACTTACTTGCTAAGTGACACTT
GAAATTTAATGTGCATTTACAAATGCATCAAAACACCTAATAACAAGTTG
ACAAAACTGTCATTTGTAAGACTTTTTTATCCTTTTCGTTTTTAGCTGAG
AGACTACGACGACTAAAGGAGAGAAGACGGGTACGAAAGCGTCACATTGA
AACAACTGATGAAGACACAGAAGAAGGTAACTCTTTAGACATTGAGACTC
TTGGTAATCATTCATCTCTCCAGTAGATATTTTTACTTAAATACGTTCAA
CACTTTGCTTTTTTAGAACAACCTCGAAAAAGAAATTCCTACGAACCCGA
GAACGAACATGAATGTCATAGATTTGAAGGTATAATCTTTTGCCCTGATA
TTGCAAGAATATATAGGCTAGAGGCTAGTGGATCAATTAGATGTGGATAT
TTTTCTGGCCATTCAAACCATTATACACTTTACACAACCTGTAAGAGACG
TGTTTTTTCGAAAGGATTACTTTCAAGGATGTTTGGGAAAACTTCAGATC
TCAAGTCTAGTTGCTGAACTAAAATTTAATTTCCTTGTATTTCAGACGAA
GAAGATTTGTTATGCGGGGTCAATGAAACAATGAATGCCTTGCTGGCTCA
TCTTGACTACGCTGGTGAGTAAAGACTTTCTTCTAGCTCTctagaaaaga
aagaaacatcATCTAAAATTTCTTAGGTTTATTCATTTGAAGCTTTTAGC
CGTTATATAGATATAGATCAGAACTTTGAAACGATTTAActcatttcatt
ttaaattttgaaattccatAAATGGTTTTGGGAAATTTTCCTGTTCAATG
TTTTATAAATTNAAATTTTGAAATTCCATAAATGGTTTTGGGAAATTGTC
CTGTTCAATGTTTTATAAATTAACTTGTCAGTGATTGAACATAACAAGGC
TTCTTTTCAACTTTCTAGAAGATGGTGAACAAGTAGATTTCGTGGCTACT
TTCCCCACGACGAGCCGCGCTCATTTCCTACGAAAAGCGGAAAAGAACaa
tcgaattttcaaatttaccgAGATCAATACCGTCCAGTACTGNTAGAAGA
TGGTGAACAAGTAGATTTCGTGGCTACTTTCCTCACGACGAGCCGCGCTC
ATTTCCTACGAAAAGCGGAAAAGAACGATCGCATTTTCAAATTCACCGAA
ATCAATACCGTCGAGTACTGGGCGGAAATGACTCGAACAATCGTGAAATG
GTTCGATAGAGGTCCAAAACGCTTGACTTTTGCACACTATAACACCTTCC
ATGACAACATGGCTCGCCACGGTGGTGTCAAAAGGCGGGGGGCAAAGCCT
GCTATTGATTGTTGGTTTCTGGTTGCAGGACTAGTTCGCGATGGATTTGA
TGCAAAATCGTACCTAGCTATGTTCCCTTGGATAGAGAACGACCTAAGGG
CAATTCGCAAACACTTAGATattaaaactgaaagaaaacttatttgaaaa
aaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032761XLOC_032761Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051751-exon-scaffold_204-1491911889:39519..39554TCONS_00051751-exon-scaffold_204-1491911889:39519..39554Clytia hemisphaericaexon
TCONS_00051751-exon-scaffold_204-1510915933:39519..39554TCONS_00051751-exon-scaffold_204-1510915933:39519..39554Clytia hemisphaericaexon
TCONS_00051751-exon-scaffold_204-1575043694:39519..39554TCONS_00051751-exon-scaffold_204-1575043694:39519..39554Clytia hemisphaericaexon
TCONS_00051751-exon-scaffold_204-1491911889:39682..39932TCONS_00051751-exon-scaffold_204-1491911889:39682..39932Clytia hemisphaericaexon
TCONS_00051751-exon-scaffold_204-1510915933:39682..39932TCONS_00051751-exon-scaffold_204-1510915933:39682..39932Clytia hemisphaericaexon
TCONS_00051751-exon-scaffold_204-1575043694:39682..39932TCONS_00051751-exon-scaffold_204-1575043694:39682..39932Clytia hemisphaericaexon
TCONS_00051751-exon-scaffold_204-1491911889:40080..40284TCONS_00051751-exon-scaffold_204-1491911889:40080..40284Clytia hemisphaericaexon
TCONS_00051751-exon-scaffold_204-1510915933:40080..40284TCONS_00051751-exon-scaffold_204-1510915933:40080..40284Clytia hemisphaericaexon
TCONS_00051751-exon-scaffold_204-1575043694:40080..40284TCONS_00051751-exon-scaffold_204-1575043694:40080..40284Clytia hemisphaericaexon
TCONS_00051751-exon-scaffold_204-1491911889:40414..40494TCONS_00051751-exon-scaffold_204-1491911889:40414..40494Clytia hemisphaericaexon
TCONS_00051751-exon-scaffold_204-1510915933:40414..40494TCONS_00051751-exon-scaffold_204-1510915933:40414..40494Clytia hemisphaericaexon
TCONS_00051751-exon-scaffold_204-1575043694:40414..40494TCONS_00051751-exon-scaffold_204-1575043694:40414..40494Clytia hemisphaericaexon
TCONS_00051751-exon-scaffold_204-1491911889:40864..40932TCONS_00051751-exon-scaffold_204-1491911889:40864..40932Clytia hemisphaericaexon
TCONS_00051751-exon-scaffold_204-1510915933:40864..40932TCONS_00051751-exon-scaffold_204-1510915933:40864..40932Clytia hemisphaericaexon
TCONS_00051751-exon-scaffold_204-1575043694:40864..40932TCONS_00051751-exon-scaffold_204-1575043694:40864..40932Clytia hemisphaericaexon
TCONS_00051751-exon-scaffold_204-1491911889:41365..41772TCONS_00051751-exon-scaffold_204-1491911889:41365..41772Clytia hemisphaericaexon
TCONS_00051751-exon-scaffold_204-1510915933:41365..41772TCONS_00051751-exon-scaffold_204-1510915933:41365..41772Clytia hemisphaericaexon
TCONS_00051751-exon-scaffold_204-1575043694:41365..41772TCONS_00051751-exon-scaffold_204-1575043694:41365..41772Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_204supercontigscaffold_204:39519..41772 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.227947	0.430522	0	0.0260117	0.0864487	0.127241	0.141494	0.198353	0.435007	0.389564	8.51838e-05	0.107618	3.89329	0.590657	0.0933567	0.156821	0.150087	0.457894	0.325246	0.451594	0.000239147	0	3.46561	0.12035	0.0945342	0.205822	0	2.55705	0.210948	1.45476
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051751 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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