TCONS_00051503 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051503
Unique NameTCONS_00051503
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length528

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051503 ID=TCONS_00051503|Name=TCONS_00051503|organism=Clytia hemisphaerica|type=transcript|length=528bp
catacataaactctgTAATGTTAAGAAAGGTGAAAGATTTGAACATTTTT
CGACGTGTTATTAATTATCCGCACAAATATCTCTGTTTATAAGTTCAAAC
AATTCATCAAAACTTTCCATAGTGTCCGAGTCATCAACGAAAGGACATTC
CACATCTTTCATTTTATATATCTTTTGCTTTGGCGTAAACAAATGCGGTT
TATAATTGCAATTGAATTCAATAAAACGAACATGCAAAATCTCTGGTGTA
ATTACAATGTTTTGAGAGGAATCTGAAAACCTGATGTGATTGGATTGATT
CTCGATAAATGTTGCATAGTCAGCGAAACTTTTCACACGATTTCTTTCTG
TATGGTTCAGAAACCTGGTCCCTtaccaaaaagtttgaaaagcaaCTAGA
CGGTACCTATACCAGACTTCTGAGAAGGGTTGAAAATCTCTCTTGGCGTG
ACCATCCAACAAAACGCACCATATATGGTTCCCTGAAACCAATCTCTCTC
CTCCTTAAAGCCAAGCGCGTTCAATTTG
Run BLAST on NCBI

transcript from alignment at scaffold_202:514345..526475+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051503 ID=TCONS_00051503|Name=TCONS_00051503|organism=Clytia hemisphaerica|type=transcript|length=12131bp|location=Sequence derived from alignment at scaffold_202:514345..526475+ (Clytia hemisphaerica)
catacataaactctgTAATGTTAAGAAAGGTGAaggctttgaaatttttt
cgacGTGTTATTAATTATCCGCACAAATATCTCTGTTTATAAGTTCAAAC
AATTCATCAAAACTTTCCATGGTGTCCGAGTCATCGACGAAAGGACATTT
CACATCTTtcattttatacattttttccATTGTCGTAAATAAAGAATAGC
AATTGAATTCAATAACAAAAACATGGAAAATCTCTGGTGCAATTACTATG
TTCTGATCGTAATCTGAAAACCTAATGTGATTGGATTGATTCTCGATAAA
TGTGGTATAGTCAGCGTAATCTTTCACATGATTTAAAGAATGAAATACTA
TCTTTAATGGttctttgtttaactttttcCGTCTCTCGTTGACGTTTTTT
GTAATCCACATAGCCGGCGGCAGGTAGGCATCAGTTaaatgaaaagtttt
gatatgaATTTCCTCAATATCTTTCAAACAAGTTTCATTGAAGAGATGTT
TAGACATTGGTAGCGATTGATAAAACTGATATCTGTTATAATCAGGGTTC
TTTATGAGATTGGTCAAATCTGCTAGATGCTGATGAAGATACATTTTGGT
TGTAAATCTACGGAAGTCTGTAAATAAGAGTCTGTGAATTGGCATCCAGA
ATTCTGAAGGACATGATTCTTGATCACAAAGAACAATAACATTCCAGCTA
TCATCTTGAAGTTTCTTAAGTGTGTTAGAAATTCTCATATCATACCACAT
ATAGTCAGTCGCAATGAAAAATGTCTGATCGAAAGAATCATTGTTACTTG
ACATTAGTCCATCTTTATtattatgtaatttttcaaGGAGACTCAAAACC
CTTTTCTCAATCGTCGGAAAGTAATCAAGAGCGGCTTCCAGCGGGTCCTT
CAACTGTCTCTCGACATGGTTGACCGTGTTTTTATCCCAACGTATAACAC
GATCTTCGTTCGGTAaatatatatttatttcaatGCAAGGATGATTCTCT
GCTATCTCTGGTAAATGATAGTTCAAAAACACATCATACATTGTCCAGGT
CATACCCCGTATAACCATAGTGACATTTCTATTTTGGGTACAACTCAGTG
TTTGAAAGTCTGTTGATTTGTTTAGAATGTCGGTCCCAGTAAagcaaaaa
acttgaaaagttaATACGAGAAAAATAGTGAACATTTTTTAAGACAAGTT
TTCTCAACTAATCTTTCACTCTCTATGTAtactttttgatgtgaaaagaA
GTACATCTCTCTCTTTTTTATTAAATCATATTAAGGTCCTGCTTTTCTAC
TTCGGAGTTGATTAATTTAAGTTAATTATAATCATATTTCAttccatgga
ggtataaagaaacaggagaagtatgctattgtaaccatgctagccctacg
attaaaaaagttacgaggtatgcatgctcataatctcatatatcgtgcat
ttttaataagctcttttgttgatagatgaaatcttattggctaacttaag
tattggaaataagatgagacgagattcattgtttctgacattggtgtaaa
aaaatatttggattaaaaaagggcctgtaaactttgcaatccttcatcaa
atgacaagatttttcgatcaacattttcttcaaggtgaactctattgctt
aatactttcctccaaaattctccagcgactttttgtctacaaactgggtc
tgaaattgtgtgtgctcgttaaaaagaatttttattttctggctggagaa
aatatcttttcaaaacaaaatttaatggatgacaaaattgaacgcaaact
tatttcgtggagccaAATTTTACTTAATTCTCGTATATTAGAAGGCTAGA
AATCTTCTATGCTGATAgtaagaatgttcagagcaaacttgagttctact
aaaaagtcgtatttcatcgggcgagcctagaatttcttttgatttattac
ataaaagaaatcaaatgactttaacgaccaattaccgaccaATTCATCTA
CTGTCTTTCTTTAATAACTCTATGGTCAGAGACTTCAAGATGATAGCTGG
AATGTTATTTTTCTTTGTGATCAGATGTCATATCCTTCAGAATTCTGGAT
GCCAATAGACAGACTCTTATTTACAGATTTCCATAGATTTACAACCAAAA
TGTATCTTTATCAGAATCTAGCAGATTTGGCCAATCTCATAAAAAACCCT
GATTATAACAGATATCNtattctcgtatattagaaggctagaaatctttt
ATGCTGATaataagaatgttcagagcaaacttgagttctactaaaaagtc
gtatttcatcgggcgagcctagaatttcttttgatttattacataaaaga
aatcaaaagactttaacgaccaattaccgaccaATTCATCtactgtcttt
ctttatacatAACTCTATGGTCAGAGACTTCAAGATGATAGCTGGaatgt
tatttttctttatgatcAGATGTCATATCCTTCAGAATTCTGGATGCCAA
TAGACAGACTCTTATTTACAGAAGATTTCCATAGATTTACAACCAAAATG
TATCTTTATCAGAATCTAGCAGATTTGGCCAATCTCATAAAAAACCCTGA
TTATAACAGATATCAGTTTTCTCAATCGCTACTAATGTCTAAACATCTCT
TTAATGAAACTTGTTTGAAAGATATTGAAGAAATTCATATCGAAACTTTT
CATTTAACTGATGCCTGCCTACCGCCGGCTATGTGGATTACAAAAAAACG
TCAACGAGAGACGGAAAAGGTTAAGCAAAGAACCATTAGAGATANNNNNN
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NNNNNNNNNNNttggtagcacttttctgtgaaatatcaaatctccaactt
attactgaaaacgggggtagtgatatgattgataacaCAGTTTTTTGATC
ATAatacattttacgatctctttaatgacctcatagccatactgttttta
gtgttttgggaattagcaaagttctttaatgacttaaaaataacaaaggc
aatataagttcatggttatcttttcaataaaaacaattatatactGTGAC
TTCGTTCGAAATAATCGATTATACCAATaaaccaatgcaccaacacttaa
cactttccaactttcaattgcactgttaaaaaaagataacataacccccg
tttttagtaataagttggagatttgatatttcacagaaaagtgctaccaa
ggggtatttcgggtcCCATATCTTCCGAAGGACTTTTCTGTTTGCCTTGA
AATTTAACAACCTTCCTAACCTAAGGTTGAACTACCACTGGTGTAAAAAT
GAACGTTATAGCATAAGTAGAAAAAAAGCTCAATTTTTGCAATAGCAAAT
TTAACCGCTAAAAATTGCGAATTTTTCAACCAAAAATACATTCTAATATA
GCGCTTTTGATTCTCTGAAACAAGCAAAAAACATTTCCATAATTATATTT
GACTATCAAAAGTTACAGGCATTCTTGTTTCCACTGCCAATTATATCTGG
ACAGACTTTAGTTGATGACTCGGACACTATGGAAAGTTTTGATGAATTGT
TTGAACTCATAAACAGAGATATTTGTGCGGATAATTAATAACACGTCAAA
AAATATTCAAAGCCTTCACCTTCTTAATATTACCGAGTTTGTgtatgtgt
gtttttctgcgacagaGCCGGTAAGAGGTTCTGATTTGTCTTGATCCtaa
ccagctgaggacgacggtaaatcagtgCTTTGGGACCGTCCTCGAACCGC
GGGTTATTCCTATAAATCACTTTAGTTATTCTACTGTCCTcgaaagtgca
aatacataaactcgctattttcagttttaagcctaaaaatattctttttt
ctactgttttgtgattatttttgtgtaatttcctaactaaagaaaaaaaa
aaaattcgtgtcGGAACCGAATCCAAGGGTTAATTTGGTGGTGTGTTCAG
AATTTCATTGAAATACGACACTTACTTACTCATTTTATCAAGTATCTCTC
CGACTAAGAAAATATCTGAAAGGTTCCTAAAGGAATTGCTCTAATACACG
CTctcttataagaacatatacTATAACTATAACGTAACATAAAAAATTGG
Aagtataaagaaaaaataataaagaaaaattatttcatgattttttattg
catgcaaaaaaaaatactgATAAGGCTTTTTCCGGACACACTGTATAAAT
CTCAAAAGTTGTCGCGAGCCATAGTTCCATTTACACATTTTTCATTTAtt
cataagaataaactatgtaagaacataaggttacGATAGcgaaaatatta
acaaaacgttaaaataattttaaggtTCTGCGGACTCAAACACACCTAAT
GTCTTaagaaaatacacaaaaatgctcacaaagtgatgaaaataagaaca
tattattaaacagttaagaatattttaagaatttgcaaaaaaagacgCAA
TTTCTTTAGTTaggaaattacacaaaaatacttacGAAATAGTACAATAA
AGAATattcataggcgtagcgagataccctgcaaaatttatgtgggagtg
cagacgtttatgacatattcatgatcttttgataaaacaaagacaataat
tacagtgtcgtaaaaaccgctctcatccataaatcttgcagggtatctcg
ctacgcctatgaattatttttaggcttaaaactgaaaatagcaagtttat
gtatttgcacttttgagaacggaagcgatttggaatatcccgcagttctg
acccgctaAATCGAGGATAGTAAAAGCGCTGATTTATTGTCGTCCTCAac
tggtcaggatctagacaagatccttaccgtctccgtcgcagaaaaacaca
catacataaactcggtaatgttAAGAAAGATTTGAACATTTTTCGACGTG
TTATTAATTATCCGCACAAATATCTCTGTTTATAAGTTCAAACAATTCAT
CAAAACTTTCCATAGTGTCTGAGTCATCAACGAAAGGACATTCCACATCT
TtcattttatacattttttccTTCGGCGTANTGAGTCATCAACGAAAGGA
CATTTCACATCTTtcattttatacattttttccTTCGGCGTAAACAAATG
CGGTTTATAGTTGCAATCGAATTCAATAACACGAACATAGATAATCTCTG
GTGCAATTACTTTGTTCTGAGAGTAATCTGAAAACCTAATGTGATTGGAT
tgattttcgataaatttgGCATAACCAGCATAATTTATTTTTACAGGAtt
tttagaatgaaatacaatCTCTAATGGTTCTTTGTTTAACATTTTCCGTC
TCTCGTTGACGTTTTTTGTAATCCACATAGCCGGCGGTAGGTAAGCATCa
gttaaatgaaaaattgtgaTGTGAATTTCATCAACATCTTTCAAACAAGT
CTCATTGAAGAGATGTTTAGACATTGGTAGCGATTGATAAAACTGATATC
TGTTATAATCAGGGTTCTTTATGAGATTGACCAAATCTGCTAGATGTTGA
TGAAGATACATTTTGGTATTAAATATATATAAATCTGTAAATAAGAGTCT
GTGTATTGGCATCCAGTATTCTGAAGGACATGATTCCTGATCACAAAGAA
CAATAACATTCCAGCTATCATCTTGAAGTTTCTTAAGTGTGTTAGAAAGA
CTCATAGCGTTAGACCACTTATAGAAAGTCGCAAAGAAAATTGTCTGATC
AAAAGAATCATCGTTACTTGATATTAGTCCATCTTTATCATTATGTATTT
CTTCAAGGAGACTTAAAACCCTTTTATTAATCGTCGAAAAGTAATCAGGA
CTGGCGTATCCCATTTGGTCCACCATCTGTCTCTCGACATGGTTGATCGT
ATTTTCATCCCAACGTATAACACGATCTTCATTCGGCAAATATATATTTA
TTGCAATGCAAGGATGATTCTCTGCTATCTCTGGTAAATTATAGTTCAAA
AACACATCACGCATTTCTCTGATCATTCCATGCATAAAAATAGTGACATT
TCTATTTTGAGTACAACTCAGTGTTCGAAAGTCTGTTGATCTGTTTAGAA
TGTCAGTCCCAGTAAagcaaaaaacttgaaaagttaATACGAGAAAAATA
GTGAACATTTTTTAAGACAAATTTTCTCAACTAATCTTTCACTCTCTATG
TAtactttttgatgtgaaaagagatatctctctctctttttccTTAAATC
ATATTATGGTCCTACTTTTCTACTTCGGATTTGATTAATTTAAGTTAATT
ATCAATCCTATTTCAttccatggaggtataaagaaacaggagaagtatgc
tattgtaaccatgctcgccctacgattaaaaaagttacgaggtatgcatg
ctcataatctcatatatcgtgcatttttaataagctcttttgttgatagg
tgaaatcttattggctaacttaagtattggaaataagatgagacgagatt
cattgtatatgacattggtgtaagaaaatatttggattaaaaaagggcct
gtaaactttgcaatccttcatcaaatgacaagatttttcgatcaacattt
tcttcaaggtgaactNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNctaacctaaggttgaactaccactggtgtaa
aaatgaacgttatagcataagtagaaaaaaagctcaatttttgcaatagc
aaatttaaccgctaaaaattgcgaatttttcaaccaaaaatacattctaa
tatagcgcttttgattctctgaaacaagcaaaaaacatttccataattat
atttgactatcaaaagttacaggcattcttgtttccactgccaattatat
ctggacagactttagttgaTGACTCGGACACTATGGAAAGTTTTGATGAA
TTGTTTGAACTCATAAACAGAGATATTTGTGCGGATAATTAATAAcacgt
caaaaaatattcaaagccTTCACCTTCTTAATATTACCGAGTTtgtgtat
gtgtgtttttctgcgacggagccAGTAAGATGTTCTGATTTGTCTTGATC
CtaaccagctgaggacgacggtaaatcagtgCTTTGGGACCGTCCTCGAA
CCGCGGGTTATTCCTATAAATCACTTTAGTTATTCTACTGTCCTcgaaag
tgcaaatacataaactcgctattttcagttttaagcctaaaaatattctt
ttttctactgttttgtgattatttttgtgtaatttcctaactaaagaaaa
aaaaattcgtgtcGGCACGAATCCAAGGGTTAATTTGGTGGTGTGTTCag
aatttcattgaaattcGACACTTACTTACTCATTTTATCAAGTATCTCTT
CGACTAAAGAAATCTCTAAAAGGGTCCTTAAAAAAATTGCGGTAATACAC
gctttcttataagaatatatACTATAACTATAACGTAACATAAAAAATTG
Gaagtataaagaaaaataataaagaaaaattatttcatggttttttattg
caaaaaaaaaatactgatAAGGCTTTTTCCGGACACACTGTATAAACCTC
AAAAGTTGTCGCGAGCCATAGTTccatttacatgtttttttattcattca
taagaataaaatattaacaaaacttTGACATAATTTTAAGGTTCTGCGGA
CTCAAACACACCTAATGTCTTaagaaaatacacaaaaatgctcacaaagt
gatgaaaataagaacatattattaaacagttaagaatattttaagaattt
gcaaaaaaagacgCAATTTCtttagcaagtttatgtatttgcactttcga
ggacggtagagtgacttaAGCGATTTGgcggaataacccgcagttctgac
ccgctaaatcgaggacagtaaaagcgctgatttaccgtcgtcctcagctg
gtcaggatcaaGACAAATTAGAACCCTACTGTCTCCGCTGCAGAAAAACA
catatacataaactcggtaatgttAAGAAGGTGAAAGATTTGAACATTTT
TCGACGTGTTATTAATTATCCGCACAAATATCTCTGTTTATAAGTTCAAA
CAATTCATCAAAACTTTCCATAGTGTCCGAGTCATCAACGAAAGGACATT
CCACATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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TTATTTTCGGTTcgcagataagaaaataaactatgtaagaacataaggtt
acgatagcaaaaatattaacaaaacgttaaaataattttaaggctttgca
gactcaaaCACACCTAATGTCTTaagaaaatacacaaaaatgctcacaaa
gtgatgaaaataagaacatattattaaacagttaagaatattttaagaat
ttgcaaaaaaagacgCAATTTCtttagcaagtttatgtatttgcactttc
gaggacggtagagtgacttaAGCGATTTGgcggaataacccgcagttctg
acccgctaaatcgaggacagtaaaagcgctgatttaccgtcgtcctcagc
tggtcaggatcaaGACAAATTAGAACCCTACTGTCTCCGCTGCAGAAAAA
CAcatatacataaactcggtaatgttAAGAAGGTGAAAGATTTGAACATT
TTTCGACGTGTTATTAATTATCCGCACAAATATCTCTGTTTATAAGTTCA
AACAATTCATCAAAACTTTCCATAGTGTCCGAGTCATCAACGAAAGGACA
TTCCACATCTTTCATTTTATATATCTTTTGCTTTGGCGTAAACAAATGCG
GTTTATAATTGCAATTGAATTCAATAAAACGAACATGCAAAATCTCTGGT
GTAATTACAATGTTTTGAGAGGAATCTGAAAACCTGATGTGATTGGATTG
ATTCTCGATAAATGTTGCATAGTCAGCGAAACTTTTCACACGATTTCTTT
CTGTATGGTTCAGAAACCTGGTCCCTtaccaaaaagtttgaaaagcaaCT
AGACGGTACCTATACCAGACTTCTGAGAAGGGTTGAAAATCTCTCTTGGC
GTGACCATCCAACAAAACGCACCATATATGGTTCCCTGAAACCAATCTCT
CTCCTCCTTAAAGCCAAGCGCGTTCAATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032642XLOC_032642Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051503-exon-scaffold_202-1491911889:514345..514373TCONS_00051503-exon-scaffold_202-1491911889:514345..514373Clytia hemisphaericaexon
TCONS_00051503-exon-scaffold_202-1510915933:514345..514373TCONS_00051503-exon-scaffold_202-1510915933:514345..514373Clytia hemisphaericaexon
TCONS_00051503-exon-scaffold_202-1575043694:514345..514373TCONS_00051503-exon-scaffold_202-1575043694:514345..514373Clytia hemisphaericaexon
TCONS_00051503-exon-scaffold_202-1491911889:525977..526475TCONS_00051503-exon-scaffold_202-1491911889:525977..526475Clytia hemisphaericaexon
TCONS_00051503-exon-scaffold_202-1510915933:525977..526475TCONS_00051503-exon-scaffold_202-1510915933:525977..526475Clytia hemisphaericaexon
TCONS_00051503-exon-scaffold_202-1575043694:525977..526475TCONS_00051503-exon-scaffold_202-1575043694:525977..526475Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:514345..526475 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.31119	2.89886	2.42292	1.5108	1.86997	1.84612	2.20845	1.69416	1.49951	2.78607	2.55354	1.62952	2.69623	1.91924	1.44689	1.21015	1.33582	1.54032	1.44743	3.62969	1.48173	0.337495	1.79703	1.86289	3.0952	3.40794	1.48498	1.99031	1.56024	0.749998
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051503 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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