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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051489 ID=TCONS_00051489|Name=TCONS_00051489|organism=Clytia hemisphaerica|type=transcript|length=1716bp
GTCAcggcacaccacaatgtctgaaatatctacccatactcttgtatcag
agttatggtacccaattcccctcacatggcatgggttgacccgggcgaag
gagcatccacttgccaagtgaatcgtagtgccacggtgggtatcgaactc
gagcctcctggacagaagtcaagcacgataaccactacaccactACGCCA
TTTAAAAAGATTACATTAATTTATTCTATGTTAATTTCCTCTTATAGCTT
GATAAAAATGGACCATTTACCACTTGAAATCTTATTTAAAATTCTCAAGG
CTTGTTCTTTTGATGATATCCAACATTTGGCTTGTAGCAGTCAGTTTTTT
CGAAAGACAACTCGCTCAATATTATGGAAAAAAGTGACTATACCACTGAA
TGGATATGCTGAATTAAAAGACAAACCTTTAGAAGCACTTCAAAATACTC
GAAGTATAATCTTCAAGAATGATTTTATGACAATTTCACCTACTGGTGGT
GTACAAATGTTGGAAAAGATTTTACCACATTGTAACAAATCAAAGATAGA
TTTACTATCTTTTAACAGCATTTTCTATAAAAATGTTATTCCATATACAT
TGGCTTATTTTGATCACGTAGAAACACTTGAGTTTGATTCTTGTAGTTAT
TTGAGAGATAATTGTCCACCCATTGACAGAATACCAACTTATAAAGTACT
AAGTTTCAATGGATATACAAGATTCGATGAACAAATTATTCGACAAAATC
ATCATTTAGAAGAAATTATAATCAATCATGGATGTAGCATTGATACTGGT
GAGATTCAAGTGTTGGGTAAAGCTACTTCACTAAAGAAGCTAGAACTATG
TTGTGTAAATCAATATGAACACTCACAACCTGGAAACTATTTAAACTTCA
AACCACTTGGACAGCTTACGAATTTGACATTTCTAGATTTAAGTTTTTGT
TATATTCCCAAAGATTCCTTCCAGGAACTATGCAAAAAGTTGGCCAAGCT
AGAAGTTCTGAAATTATTTCATTCTTCAACGGAGAGTGAAGCTTTGAAGA
GCCTAAAACATCTTGAAAGTTTAAAAGAATTGGAAATCGTCCCACCAAGA
TATCACAATATGACTATCGAGTTCTTTAAATCTTTGAAGGCTTCTACAAC
GCTCCGAGAAATAACTTTTCATTTTACAATGTGCCGCGGAGAGGATAGGC
AGTATGTTGCATGTTTGAATTCTTTCAATTccttaaagaaaatcaatatt
cgCAGCCCAGGTGAGATCATTGATGATATTATATTGGACCTTGATTCAGT
CTGGGAATACCAAGAATGGACACACGCTGGCATGACATTCTGTAATGACA
TTGGCACAGAACTTGTTATCATGTTTGCAAAGGCCTAAGTACAAGTTTTA
ATAACCCCTTCTGTGAAAATGTAAGGGGGTTTTTgtttatataccgggtg
caccaaacaaagtatacaactttgtcgagatattgtgagcttcaggattt
aaattttttgttcattctttttttatcgcatagaggatgctctaacttga
attttgagctatcatacattaggtttgaaaaagtaattcgaaaattattt
caaaaaaacttactttttttatttcaaaaaatcatcgaaaacagcgagca
aacatttctcttgacacttaccttctttacacataaaaatactaaaattt
taAATACTAAAACTCG Run BLAST on NCBI transcript from alignment at scaffold_202:232749..234464+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051489 ID=TCONS_00051489|Name=TCONS_00051489|organism=Clytia hemisphaerica|type=transcript|length=1716bp|location=Sequence derived from alignment at scaffold_202:232749..234464+ (Clytia hemisphaerica)
GTCAcggcacaccacaatgtctgaaatatctacccatactcttgtatcag
agttatggtacccaattcccctcacatggcatgggttgacccgggcgaag
gagcatccacttgccaagtgaatcgtagtgccacggtgggtatcgaactc
gagcctcctggacagaagtcaagcacgataaccactacaccactACGCCA
TTTAAAAAGATTACATTAATTTATTCTATGTTAATTTCCTCTTATAGCTT
GATAAAAATGGACCATTTACCACTTGAAATCTTATTTAAAATTCTCAAGG
CTTGTTCTTTTGATGATATCCAACATTTGGCTTGTAGCAGTCAGTTTTTT
CGAAAGACAACTCGCTCAATATTATGGAAAAAAGTGACTATACCACTGAA
TGGATATGCTGAATTAAAAGACAAACCTTTAGAAGCACTTCAAAATACTC
GAAGTATAATCTTCAAGAATGATTTTATGACAATTTCACCTACTGGTGGT
GTACAAATGTTGGAAAAGATTTTACCACATTGTAACAAATCAAAGATAGA
TTTACTATCTTTTAACAGCATTTTCTATAAAAATGTTATTCCATATACAT
TGGCTTATTTTGATCACGTAGAAACACTTGAGTTTGATTCTTGTAGTTAT
TTGAGAGATAATTGTCCACCCATTGACAGAATACCAACTTATAAAGTACT
AAGTTTCAATGGATATACAAGATTCGATGAACAAATTATTCGACAAAATC
ATCATTTAGAAGAAATTATAATCAATCATGGATGTAGCATTGATACTGGT
GAGATTCAAGTGTTGGGTAAAGCTACTTCACTAAAGAAGCTAGAACTATG
TTGTGTAAATCAATATGAACACTCACAACCTGGAAACTATTTAAACTTCA
AACCACTTGGACAGCTTACGAATTTGACATTTCTAGATTTAAGTTTTTGT
TATATTCCCAAAGATTCCTTCCAGGAACTATGCAAAAAGTTGGCCAAGCT
AGAAGTTCTGAAATTATTTCATTCTTCAACGGAGAGTGAAGCTTTGAAGA
GCCTAAAACATCTTGAAAGTTTAAAAGAATTGGAAATCGTCCCACCAAGA
TATCACAATATGACTATCGAGTTCTTTAAATCTTTGAAGGCTTCTACAAC
GCTCCGAGAAATAACTTTTCATTTTACAATGTGCCGCGGAGAGGATAGGC
AGTATGTTGCATGTTTGAATTCTTTCAATTccttaaagaaaatcaatatt
cgCAGCCCAGGTGAGATCATTGATGATATTATATTGGACCTTGATTCAGT
CTGGGAATACCAAGAATGGACACACGCTGGCATGACATTCTGTAATGACA
TTGGCACAGAACTTGTTATCATGTTTGCAAAGGCCTAAGTACAAGTTTTA
ATAACCCCTTCTGTGAAAATGTAAGGGGGTTTTTgtttatataccgggtg
caccaaacaaagtatacaactttgtcgagatattgtgagcttcaggattt
aaattttttgttcattctttttttatcgcatagaggatgctctaacttga
attttgagctatcatacattaggtttgaaaaagtaattcgaaaattattt
caaaaaaacttactttttttatttcaaaaaatcatcgaaaacagcgagca
aacatttctcttgacacttaccttctttacacataaaaatactaaaattt
taAATACTAAAACTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051489-exon-scaffold_202-1491911889:232749..234464 | TCONS_00051489-exon-scaffold_202-1491911889:232749..234464 | Clytia hemisphaerica | exon |
| TCONS_00051489-exon-scaffold_202-1510915933:232749..234464 | TCONS_00051489-exon-scaffold_202-1510915933:232749..234464 | Clytia hemisphaerica | exon |
| TCONS_00051489-exon-scaffold_202-1575043694:232749..234464 | TCONS_00051489-exon-scaffold_202-1575043694:232749..234464 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_202 | supercontig | scaffold_202:232749..234464 + |
Blast
The following BLAST results are available for this feature:
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