TCONS_00051430 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051430
Unique NameTCONS_00051430
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length472

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051430 ID=TCONS_00051430|Name=TCONS_00051430|organism=Clytia hemisphaerica|type=transcript|length=472bp
AAATCATTAACATTGAAACTTCTTTTCTAGGAACCCGCAATCAAACAAAT
AGAGTTGATCAACAATATGATCAAAGAATTTGATTGTTTGGTGGATAGAA
AAAAGGCTCTTAAAGAAGAGTTAGCCGaagctgaaaataaaaataaaatc
cttAAATTGAAACTTGGCATCAGTGAAAAGCAACCATCTCGCTACAAAGT
CATCGTTCAACAAGATCTAGACAAAAAGATGCCGGCCACTGCCAAAGAAG
CTAGCGacgaaatggccaaaatgaTGAACAATCTCGCCCATAATATCAAG
AGAGCAAATATCTtattaaaaagacaaaaagcaGATTTGCAGAAAATCAA
CAGCGAAAATGTTCTTCTCGGACACAAATTTTTTGAGAAGATACTAAGAA
ACAACGCCGCTTCAAATCCTCAATTCCCAAATGGGCATCATTTTCCATCC
ACGGAATTATGGGAATGAAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_201:577853..578901-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051430 ID=TCONS_00051430|Name=TCONS_00051430|organism=Clytia hemisphaerica|type=transcript|length=1049bp|location=Sequence derived from alignment at scaffold_201:577853..578901- (Clytia hemisphaerica)
AAATCATTAACATTGAAACTTCTTTTCTAGGAACCCGCAATCAAACAAAT
AGAGTTGATCAACAATATGATCAAAGAATTTGATTGTTTGGTGGATAGAA
AAAAGGCTCTTAAAGAAGAGTTAGCCGAAGCTGAAAATAAAAATAAAATC
CTTAAATTGAAACTTGGCATCAGTGAAAAGGTGAGAAAATGTCATTTTTT
TCGCGATATCTCAGTCTGTTAAAATGAACGAGAGCAAAAAAATACAAAAA
GGTTTTTCCCAGATTCCCATATACTTTTAGTCCAAGTGTCTTTTATAGTA
TGTTGTTACAGTAGCGTAGACAGGAGGGGCGCAAAATTTGTGTAGGAGAG
CAAACTTTCATGACACTGTGATTATCTATTCATAATGTAAAAAGATAATT
AGAGTGTCATTAAAATCTGCTCTCCTACATAAATTTTGCGCCCCTCCTGT
CTACGCTACTGTTTGTAAGCCCTCGTATTATTTCAAAGCGATTTACGCTA
GACATAATCGAATAATTTACGCCAGATTAAGTTTCACATTTTCGAAAACG
AAAATAAATTCACGCGAGATTTTCGAAATTGTGCTTTCCGACGCAAAGCT
TATAATTTATTTCTAACAATGTTCTAGCAACCATCTCGCTACAAAGTCAT
CGTTCAACAAGATCTAGACAAAAAGGTGAGTTTACTTTCTTAAATGTTAG
CACTTTTCGCTTTTCAGGAGGAATTAAGTTTTTAGTGTAATTTCCTGAGA
AACTGCCGTATTTTTTTCCTACAGTAAAAACAACTGATAATTTATTTTCT
CATAGATGCCGGCCACTGCCAAAGAAGCTAGCGACGAAATGGCCAAAATG
ATGAACAATCTCGCCCATAATATCAAGAGAGCAAATATCTTATTAAAAAG
ACAAAAAGCAGATTTGCAGAAAATCAACAGCGAAAATGTTCTTCTCGGAC
ACAAATTTTTTGAGAAGATACTAAGAAACAACGCCGCTTCAAATCCTCAA
TTCCCAAATGGGCATCATTTTCCATCCACGGAATTATGGGAATGAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032586XLOC_032586Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051430-exon-scaffold_201-1575043694:578722..578901TCONS_00051430-exon-scaffold_201-1575043694:578722..578901Clytia hemisphaericaexon
TCONS_00051430-exon-scaffold_201-1575043694:578227..578274TCONS_00051430-exon-scaffold_201-1575043694:578227..578274Clytia hemisphaericaexon
TCONS_00051430-exon-scaffold_201-1575043694:577853..578096TCONS_00051430-exon-scaffold_201-1575043694:577853..578096Clytia hemisphaericaexon
TCONS_00051430-exon-scaffold_201-1510915933:578722..578901TCONS_00051430-exon-scaffold_201-1510915933:578722..578901Clytia hemisphaericaexon
TCONS_00051430-exon-scaffold_201-1510915933:578227..578274TCONS_00051430-exon-scaffold_201-1510915933:578227..578274Clytia hemisphaericaexon
TCONS_00051430-exon-scaffold_201-1510915933:577853..578096TCONS_00051430-exon-scaffold_201-1510915933:577853..578096Clytia hemisphaericaexon
TCONS_00051430-exon-scaffold_201-1491911889:578722..578901TCONS_00051430-exon-scaffold_201-1491911889:578722..578901Clytia hemisphaericaexon
TCONS_00051430-exon-scaffold_201-1491911889:578227..578274TCONS_00051430-exon-scaffold_201-1491911889:578227..578274Clytia hemisphaericaexon
TCONS_00051430-exon-scaffold_201-1491911889:577853..578096TCONS_00051430-exon-scaffold_201-1491911889:577853..578096Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_201supercontigscaffold_201:577853..578901 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.131545	0.546284	0.709224	0.517331	0	0.637502	0.574823	0.347029	0	0	0.891478	0	0	0.698819	0	0	0.355838	0	0	0	0	0	0.509234	0	0	0	0.317551	0.149724	0.152546
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051430 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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