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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051415 ID=TCONS_00051415|Name=TCONS_00051415|organism=Clytia hemisphaerica|type=transcript|length=5293bpRun BLAST on NCBI protein sequence of TCONS_00051415-protein >TCONS_00051415-protein ID=TCONS_00051415-protein|Name=TCONS_00051415-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1421bp MALLEKSSKLKELLDKLKEINRLQHSPVEVFDQISTMLEEEANVYDASDPRun BLAST on NCBI transcript from alignment at scaffold_201:423727..454245- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051415 ID=TCONS_00051415|Name=TCONS_00051415|organism=Clytia hemisphaerica|type=transcript|length=30519bp|location=Sequence derived from alignment at scaffold_201:423727..454245- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_201:423727..454245- >TCONS_00051415 ID=TCONS_00051415|Name=TCONS_00051415|organism=Clytia hemisphaerica|type=CDS|length=132246bp|location=Sequence derived from alignment at scaffold_201:423727..454245- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00051415 vs. Swiss-Prot (Human)
Match: DCAF1 (DDB1- and CUL4-associated factor 1 OS=Homo sapiens GN=DCAF1 PE=1 SV=3) HSP 1 Score: 677.167 bits (1746), Expect = 0.000e+0 Identity = 470/1383 (33.98%), Postives = 713/1383 (51.55%), Query Frame = 2
Query: 212 REEADSSWKHLLEIVADADELRYKYLTINYITKRENDFELNCAMARLLINLEPALPWSNFFSDLDQFVPKCLEWAKDGKEPLRSYACALMVKGMRTPSGPSHFMDKICELTKILIQRLQYL----------SKEPDSKQPCVE------------DFGKLP-DIISTPQ----------------------VNKKSRKSDAGRSKCDQTKTPTSSRKRK------LVPPKPTKPF------QYERLS-------MSLKPLTIGKQQELILRFLYPISEYQELLPIVLETNVLNLIFHYIDHTKQPNGHLACAALMYLSSLLCHKKFIVEFINRHGIQKILEIPQPSSVATMSSLCLYYLVYNNGNEDCIERICLLPHSTLQRLVAFLLKLSESSHVSGRCHXXXXXXXXXXXKAILQLFDSMDGLRKIVNLISTLKIMRI-GEXXXXXXXXVYLDHEMAKNACQTLKKYFETHITMIGETYKTSKN------VVNQLPKYKPLQITPESLEKSFNKIIKNTSDGVATTKEGYFLKKXXXXXXXXXXXXXXTTTAERKNYEHKNEXXXXXXXXXXXXSVFKEIAFSFCQKISI----NAAESSSGMGILLTAIEGSI-EKDIEVRKAALKVLCNCVTSSKSLIQDNTSAITNPQRKNLTESNGTDXXXXXXXXXXXXKVKLIEKIWSSFRXHSNNNKVKLIEKIWSSFRSNNGIMILLRTLEIASPLTEADSIRALVCKALYGIAENKLISQILGRLPMFHNEEIHQLMKEPILSDRITEHNMFTQYASLLLERVTGIPSKTTYNSA-----QASIISQTRITYSQKELLQVVYNHLKKSGLSKAAEVLKDEADLPSTTEDKRTTF-----GTPSITIPKDLCSPSITNEKTPFNNKTFSRTLSTSNTPISSPQTE--------------------RRVLF-----TPNRRKSIAXXXXXXXXXXXXXXXXXXXXYQRPVSPPPPTLDNIITSYLREQHARCANPVATCPPFSLFRPHNCPKPKYRQRASNNITKRLFDRQGNPPQGGQMGCKYTRRFLYSKFRSGVTYRGPGDEEEMYTAGTWMSDSGSMAFGTVAGYVKVVN-YLGQDELAHTAHXXXXXXXXXXKDCKLIATSAEHGPPTGCVWRVVESPVENGLFSLENAFELPEDAYLKFN-NSQDRVIGTNTLTANVYDLGTGQRIGTYHDEXXXXXXXXXXACFSPCDNLLLNDGVLWDIRGKQLIHKFDKFNNRVSGIFHPAGREIIIDSEVWDLRTFRLLDTYPELEDCHIRFSGLGDVFYTGKLRAKYFDSYLKNGILGPYESSFRVFDAYDYSALGTVDTKRIIIDVLPDPSDQCLAVLEDDPVM-RFEFDTTCRIYNIGRTK 4018
R + + HLL I+ D+ + +T RE LN A RLL+++ P L + F + + V +WA++ +PLR+Y+ L+ M +++ D+ +L I+++RL+ L +K P ++ E D+G + D++ Q VN ++ D G K K RK P + F + +S +L P+T +Q LIL++L P+ EYQELLPI ++ L+ YID + + L AL +L+SLL H KF EF+ G+QK+LEIP+PS AT S+CLYYL YN +D +ER+C+ PH+ L +V + L L E SH SG CH+++FFS+ FSF+A+L+LFD DGLR++VNLISTL+I+ + + L SDD+++ + K+ C L+KYFE H+ + E K S +V+ P YK T E + + +I+ + FLK L QLLLQLI+ K Y +N+ + ALD+L L+V +I + + + + S+ G+ I+L EG D E++K+AL+++ NCV + I I+ R+ L ++ + + K+W+ +SNNGI +LL L I P+T+AD IRAL CKAL G++ + + QI+ +LP+F + +I QLMKEP+L D+ ++H F +YA+ L+ERV+G P + + +A +++Q+RI++ +KELL ++ NHL GL + A VL EADLP T + F +++P+ +P I N + S + P + PQ R+ F +P + I + + S ++Q R + P PPTLD+IIT YLREQHARC NPVATCPPFSLF PH CP+PK R++A N T RL R P GG G + R ++S+FR +R ++E +T + + + GT G +K+ N + GQ+E ++ H SAI +E S+D L+ TSA P +W + +F ++++F ED Y++F+ +SQDRVIGT A++YD+ TG ++ T + + NNY +N A F+P D+L+LNDGVLWD+R Q IHKFDKFN +SG+FHP G E+II++E+WDLRTF LL T P L+ C + F+ G V Y L+A D ++ + P+ SSFR F+A DY + T+D KR I D+ D D LAV+E+ M DT CR+Y +GR +
Sbjct: 64 RADPECMLGHLLRILFKNDDFMNALVNAYVMTSREP--PLNTAACRLLLDIMPGLETAVVFQEKEGIVENLFKWAREADQPLRTYSTGLLGGAMENQDIAANYRDENSQLVAIVLRRLRELQLQEVALRQENKRPSPRKLSSEPLLPLDEEAVDMDYGDMAVDVVDGDQEEASGDMEISFHLDSGHKTSSRVNSTTKPEDGGLKKNKSAKQGDRENFRKAKQKLGFSSSDPDRMFVELSNSSWSEMSPWVIGTNYTLYPMTPAIEQRLILQYLTPLGEYQELLPIFMQLGSRELMMFYIDLKQTNDVLLTFEALKHLASLLLHNKFATEFVAHGGVQKLLEIPRPSMAATGVSMCLYYLSYN---QDAMERVCMHPHNVLSDVVNYTLWLMECSHASGCCHATMFFSICFSFRAVLELFDRYDGLRRLVNLISTLEILNLEDQGALLSDDEIFASRQTGKHTCMALRKYFEAHLAIKLEQVKQSLQRTEGGILVHPQPPYKACSYTHEQIVEMMEFLIEYGPAQLYWEPAEVFLK----LSCVQLLLQLISIACNWKTYYARNDTVRFALDVLAILTVVPKIQLQLAESVDVLDEAGSTVSTVGISIILGVAEGEFFIHDAEIQKSALQIIINCVCGPDNRISSIGKFISGTPRRKLPQNPKSSEHT--------------------------------LAKMWNVVQSNNGIKVLLSLLSIKMPITDADQIRALACKALVGLSRSSTVRQIISKLPLFSSCQIQQLMKEPVLQDKRSDHVKFCKYAAELIERVSGKPLLIGTDVSLARLQKADVVAQSRISFPEKELLLLIRNHLISKGLGETATVLTKEADLPMTAASHSSAFTPVTAAASPVSLPR---TPRIANGIATRLGSHAAVGASAPSAPTAHPQPRPPQGPLALPGPSYAGNSPLIGRISFIRERPSPCNGRKIRVLRQKSDHGAYSQSPAIKKQLDRHL-PSPPTLDSIITEYLREQHARCKNPVATCPPFSLFTPHQCPEPKQRRQAPINFTSRLNRRASFPKYGGVDGGCFDRHLIFSRFRPISVFREANEDESGFTCCAFSARERFLMLGTCTGQLKLYNVFSGQEEASYNCHNSAITHLEPSRDGSLLLTSATWSQPLSALWGM------KSVFDMKHSFT--EDHYVEFSKHSQDRVIGTKGDIAHIYDIQTGNKLLTLFNPDLANNYKRNCATFNPTDDLVLNDGVLWDVRSAQAIHKFDKFNMNISGVFHPNGLEVIINTEIWDLRTFHLLHTVPALDQCRVVFNHTGTVMYGAMLQADDEDDLMEERMKSPFGSSFRTFNATDYKPIATIDVKRNIFDLCTDTKDCYLAVIENQGSMDALNMDTVCRLYEVGRQR 1393 The following BLAST results are available for this feature:
BLAST of TCONS_00051415 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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