TCONS_00050743 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050743
Unique NameTCONS_00050743
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1460

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050743 ID=TCONS_00050743|Name=TCONS_00050743|organism=Clytia hemisphaerica|type=transcript|length=1460bp
ATTAGCCTTTGGACAAGCTTGAAGTCATCAATAACGTACGTATTAGGAAA
GCGTTGAGCATAATTCGACAATACTCCAATCATCTGTtcgactttttcaa
aacttgaattTTTCTTGTAAAGATCTGAAACTTTGTGTAAGATAACATCA
AATGGCCCTTGATCTTCCATGTTATTGTCAAGNCTTTTGTCACTTGAGAA
AGCATCATGGAACCCCTGGAAACTAAAATTTAACCCCGAACATTGTTCTA
GAGGTTGTGGAAGAAAGCTAATGCTTCCCCTTTTTGGCACATTGCTTTAC
CATCCTGAcaatatcttttgaaaattgctgTTCTCTGACACCTGTATATC
CAGGAAAATGATTCAAGTCTACAACAGCATAATCTCCTTGAAGGTCTTTC
AATATATCAACTCCATATAATTTCAAATCCGCATAATCAGATATCTTATT
ATGAATAGCCCGAAGCACAACATTATCAAGCAAAAGAGGGTCTTCCTCAT
AAGAATGCCATGTTCGTGTCCTAGGATCTCGTTCGTGTAGTTCTGGGTTA
AAATTATTCcctatttttgatatttgtcttgtatcaaaagttaaacTGTT
TTGTTTGTTAACACACTCTATATTCTTTACAGAAGGTCTTTCAAAGACAC
TTATCTGATCTCCAATGACAAACATCTTATACAAAACACCACTATGGTTA
CAAAACTCTTGCAATAAGCAAGGGTATGTAATATCACGTAACTGTTCCat
ggaaaaaataataataaacttGTGTGCATCTACCGCTTTGCAGGCTGGTA
ACGGCTTCACCAAAATAGGAAATTTCATATCACAAGATAAAATCTGTTTC
TGCATATGTTCGATAGTAGAAAGATTGTTGTCCAAATCACATAATTCTAA
AGATTTAGGTGCATACACTGAAATACCATTGACGTTTAAAGCACATTCCT
TCAAAATCTCTAATTGATATTTACGGTTCATTAGCCTTTGGACAAGCTTG
AAGTCATCAATAACGTACGTATTAGGAAAGCGTTGAGCATAATTCGACAA
TACTCCGATCATctgttcaactttttcaaaacttgaattTTTCTTGTAAA
GATCTGAAACTTTGTGTAAGATAACATCAAATGGCCCTTGATCTTCCATG
TTATTGtcaagattaatttttgtaattttgattgATTCTTGATCACATAG
ATCTTGGATACACTCTGGTataattttcttccttttacaAGGCATTAGAA
CACCCAAATGTATTGGTTTAACTTCAAAGTCCATGTTTTACAAAGTTGTT
CTCTGAAAATGATAAAGTTTAAACACCAAAATGACTGTAAGAAGACTGTT
AAAAATATTCTGTTCTACattttataactgaaaatatatTAGCCTGGCAC
CATTTTTAATTGCTTATTTCATCTTTTGCAATAGCAATAAAATACCAAAT
ATAGTGTCTT
Run BLAST on NCBI

transcript from alignment at scaffold_185:235662..237121+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050743 ID=TCONS_00050743|Name=TCONS_00050743|organism=Clytia hemisphaerica|type=transcript|length=1460bp|location=Sequence derived from alignment at scaffold_185:235662..237121+ (Clytia hemisphaerica)
ATTAGCCTTTGGACAAGCTTGAAGTCATCAATAACGTACGTATTAGGAAA
GCGTTGAGCATAATTCGACAATACTCCAATCATCTGTtcgactttttcaa
aacttgaattTTTCTTGTAAAGATCTGAAACTTTGTGTAAGATAACATCA
AATGGCCCTTGATCTTCCATGTTATTGTCAAGNCTTTTGTCACTTGAGAA
AGCATCATGGAACCCCTGGAAACTAAAATTTAACCCCGAACATTGTTCTA
GAGGTTGTGGAAGAAAGCTAATGCTTCCCCTTTTTGGCACATTGCTTTAC
CATCCTGAcaatatcttttgaaaattgctgTTCTCTGACACCTGTATATC
CAGGAAAATGATTCAAGTCTACAACAGCATAATCTCCTTGAAGGTCTTTC
AATATATCAACTCCATATAATTTCAAATCCGCATAATCAGATATCTTATT
ATGAATAGCCCGAAGCACAACATTATCAAGCAAAAGAGGGTCTTCCTCAT
AAGAATGCCATGTTCGTGTCCTAGGATCTCGTTCGTGTAGTTCTGGGTTA
AAATTATTCcctatttttgatatttgtcttgtatcaaaagttaaacTGTT
TTGTTTGTTAACACACTCTATATTCTTTACAGAAGGTCTTTCAAAGACAC
TTATCTGATCTCCAATGACAAACATCTTATACAAAACACCACTATGGTTA
CAAAACTCTTGCAATAAGCAAGGGTATGTAATATCACGTAACTGTTCCat
ggaaaaaataataataaacttGTGTGCATCTACCGCTTTGCAGGCTGGTA
ACGGCTTCACCAAAATAGGAAATTTCATATCACAAGATAAAATCTGTTTC
TGCATATGTTCGATAGTAGAAAGATTGTTGTCCAAATCACATAATTCTAA
AGATTTAGGTGCATACACTGAAATACCATTGACGTTTAAAGCACATTCCT
TCAAAATCTCTAATTGATATTTACGGTTCATTAGCCTTTGGACAAGCTTG
AAGTCATCAATAACGTACGTATTAGGAAAGCGTTGAGCATAATTCGACAA
TACTCCGATCATctgttcaactttttcaaaacttgaattTTTCTTGTAAA
GATCTGAAACTTTGTGTAAGATAACATCAAATGGCCCTTGATCTTCCATG
TTATTGtcaagattaatttttgtaattttgattgATTCTTGATCACATAG
ATCTTGGATACACTCTGGTataattttcttccttttacaAGGCATTAGAA
CACCCAAATGTATTGGTTTAACTTCAAAGTCCATGTTTTACAAAGTTGTT
CTCTGAAAATGATAAAGTTTAAACACCAAAATGACTGTAAGAAGACTGTT
AAAAATATTCTGTTCTACattttataactgaaaatatatTAGCCTGGCAC
CATTTTTAATTGCTTATTTCATCTTTTGCAATAGCAATAAAATACCAAAT
ATAGTGTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032141XLOC_032141Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050743-exon-scaffold_185-1491911889:235662..237121TCONS_00050743-exon-scaffold_185-1491911889:235662..237121Clytia hemisphaericaexon
TCONS_00050743-exon-scaffold_185-1510915933:235662..237121TCONS_00050743-exon-scaffold_185-1510915933:235662..237121Clytia hemisphaericaexon
TCONS_00050743-exon-scaffold_185-1575043694:235662..237121TCONS_00050743-exon-scaffold_185-1575043694:235662..237121Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_185supercontigscaffold_185:235662..237121 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.278376	0	0	0	0	0.00261252	0.0978937	0.423888	0	0.132579	0	0	0.683285	0.147159	0.478862	0.666534	0.772978	1.89139	0.137885	1.3441	2.18137	2.66006	0.785988	1.41857	0.0489526	0.592941	3.98145	1.03045	11.5227	8.41223
Blast
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BLAST of TCONS_00050743 vs. Swiss-Prot (Human)
Match: ITPK1 (Inositol-tetrakisphosphate 1-kinase OS=Homo sapiens GN=ITPK1 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 5.219e-36
Identity = 88/305 (28.85%), Postives = 161/305 (52.79%), Query Frame = -3 
Query:  331 KRKKIIPECIQDLCDQESIKITKINLDNNMEDQGPFDVILHKVSD-LYKKNSSFEKVEQMIGVLSNYAQRFPNTYVIDDFKLVQRLMNRKYQLEILKECALNVNGISVYAPKSLELCDLDNNLSTIEHMQKQILSCDMKFPILVKPLPACKAVDAHKFIIIFSMEQLRDITYPCLLQEFCNHSGVLYKMFVIGDQISVFERPSVKNIEC-VNKQNSLTFDTRQISKIGNNFNPELHERDPRTRTWHSYEEDPLLLDNVVLRAIHNKISDYADLKLYGVDILKDLQ-GDYAVVDLNHFPGYTGVRE 1236
            K KK+  +   +LC +  +++ ++NL   +E+QGP DVI+HK++D + + + +  +  +++     Y    P T V+D    ++ L++R    E++++    +    + +P  +EL  L  +  T+  ++K  L+    FP + K   A    ++H+  I+F+ E L  I  PC++Q F NH+ VLYK+FV+G+  +V +RPS+KN     + + S+ F++  +SK      PE               E P    + V+R +   +     + L+G+DI+ + Q G +AV+D+N FPGY GV E
Sbjct:   18 KIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGD-DTMRLLEKNGLT----FPFICKTRVA-HGTNSHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSK------PESSSVLTELDKIEGVFERP---SDEVIRELSRALRQALGVSLFGIDIIINNQTGQHAVIDINAFPGYEGVSE 307
The following BLAST results are available for this feature:
BLAST of TCONS_00050743 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ITPK15.219e-3628.85Inositol-tetrakisphosphate 1-kinase OS=Homo sapien... [more]
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